Contig Data
morexGenes
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Map Locations of contig_82140 (3437 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_82140

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_78844 1 787 bp None Available Available LOC_Os03g29470.1, FRAME:+1, EVALUE:2e-46, 13103.m03388 protein transcription initiation factor IID, putative, expressed
MLOC_78845 1 1365 bp MLOC_78845.1 Available Available None





CDS Structure of MLOC_78844






CDS Structure of MLOC_78845






Contig Sequence (3437 bp)

>contig_82140 3437 assembly3_WGSMorex_rbca.fasta
TTGATCAATGAGCTAGTCAACTAGTGGCTTACNNNGGACAGTGTTTTGTCTATGTATCCA
GGCATGTATTTTAGTTTCCAATCAATANNNNNNNNNNATGGATAATAAACTATTATCATG
AATAAGAAAATATAATAATAACCAATTNNNNNNNNNCTCTAGGGCATATTTTCAACAAAA
ATATATCTTCTTTCCTTTCCTCCAACAAGATCCTTTGCAAAAATTACAATATCTTTCAAC
CCTTTTCTGTTTTCCGTAATGAGACCTTTGTTGCGAAAATTTCATCTAAAGCAATTGTAG
TATTACTTCGTGCATTCCGTTCACAAAAATTACTTGTGAGCGACACATGCGTGTAGCATC
CAAAGCGCGGCCTAAAATACCGACACTTCATCGATTTAATGGAAGATGACATTTTAAAAA
GTTTCTTGCCATATAAGCCCTTCACGTGGTCGGCCCGATTAAAATGAATCGGACGTGTGG
CGGATGTCACGTGCAGGATCAGTCGGTAGATTTAGACCATTTTTCTTGAGTAAGAGCCTG
TGTGGGACTGCTCTGCTCCTTAAAATTCAGCTCTGCTCCAGAAAAGACAAGCCAAACGGG
GTAGCTCCACGATATGTTGTTCCGCAAAAAACTAGAATCTAGGTACAACTTCAGAGTTTT
TATGAAGCTCCTAAGAGGGTGCTCAAAAAAACTCTAGAAGTTGAAGCTGGGGGGAATTAC
GCACCACTGCCACCAGTAAGTGGATACCCCTTCATTTCTTTACCCTCAACCAATGAAATA
GATTCTTTCCACTGAATTTTCTATCCCAGAAGCTGGAGCTAAATGAAAGCCAAACATTCT
CTTGATAGTGCTATAACTTCTATTAATGAAACTGCTTCAAAATTGAATTTGACGAAGTGA
AGCTGATTTTGATGAATTGAAGCAGTCCCAAACAGCCTAAACCAAGCCACACAAAAAAAA
AAAATCGACGCCTGAGAGATTCGAACTCTCGCGGGGAAACCCCATGTACTTAGCAGGCAC
ACGCCTTAACCACTCGGCCAAAGCGTCTTTGATGACACTATTGCTACATTTTATGCTTTT
AAACGGTACTATATCTAACCCCCATTCGTTCCCCGAACCCCTCCCCACCAGCCGAGGCAA
GACACAGCAATCAGGCCATGGACAGCGGCGGCGTGCGGCCATCGCTTCCGTCCGCGGCGG
CGGCGGGAGGAGCCTCCGTCCCGGACGAGCCGCGCGACGCGCGCGTGGTGCGGGAGCTCC
TCCGGTCGATGGGGCTCGGCGAGGGCGAGTACGAGCCGCGCGTCGTGGGCCAGTTCCTGG
ACCTGGCATACCGGTACGTCGGGGACGTGCTCGGCGACGCCCAGGTCTACGCCGACCACG
CAGACAAGCCCCAGATCGACGCCGACGACGTCCGCCTCGCCATCCAGGCCAATGTCAACT
TCTCCTTCTCCCAGCCGCCGCCCCGCGAGGTACGAGCACTACCAATCTCACCAAAAACCC
TAGAGTATATCTTCGTTAGATTCGGACGAATTACTAGGTATCGTAGCTTCATTCAACTCG
TCAATGAAGAGGACAAGGGTCCAATTTAAACTCCAGATCCAGGGCGGGCTTTCCTGTGAA
CCTATCAGATTCGGAGGGAACAATGTTTTGGACTCCGATTGGGGAAAGGATAAGCTTGTA
GAGGATGTGCAGATGTGTCGAAGAAGAAACAATCTAGATAGATACTGCCTCTATCCGGTT
ATACAGGGGCTAATATGTATTTCGAGATTTAAGCTGACCATCAATAGGATCCCTGTTCAA
GAATCCATCCGATTAACCAGTTAAATTGTTGATTAATCCCTACTCGCAGGCTCATTGAAT
AGCCGATAAACCTAAAAATCGTCCTATTAATTGATTAAATTGCTGATTCCCTTGCCGATT
AGCCCATTAATCCCCTACTCGCCACCCAACCGAGCAGCTGCCAGTTAACGATTTCCTCAA
CAAGGAATAGGATAAACATATATGAGATGTATATGCTATAAAGATCCTACCATTAGAAAC
AACTTTCAACGAATTTGATGGTATACTTTTTGCAACGCCCGCATCATATATTATTGGTCT
AAATAATGGTCAAAATAAATCTTGAAACATGCTTTACTCCCTATATATTAGGATGGAGGG
AGTACGGAAAATGGTGTGTGCTATGAGATTTCAGTTAATTTCTGGGTCTTGGCTGGGAGA
TATTTTTTGGGGGAAATTTGAATCTCAAATAAGGCTCAACTTCTTGATCAAATGTGTTCC
ACAATAAGAGCACATCAATCATAGCTTCAGACATGGTGGTTAGAAGCCACCATCCGGAAC
GCAGCACAGAGAGATTGCGGATTTGCAGTTTTGAGTCCTTGAGCTCACAAAATGTCGGTT
TTTTTAACTCATAGCCATCTGAGGGACCAACATATCAGTCAGTGTTATACTGAAATTATA
ATGAACAAACATAGGAGGGAATGTGGGATTCAAACCCAGATTCATCTCAAGTACTAGTAC
TCTACCACCCTACCACTAGGACCAAGATGACTCCTTTATCCGTTAGGAAGTTGGAACTGA
CCAAACTTTTGCCAGTTTGATGGGGTAATCAGGGAGTGCCAAGATTTTACGTCCAGAGTG
CAGCTATTAGCAGAAATGAATACCTTGTCGATGTAAGGTATGATCAATACCAATAGGTGG
GAGAAGTCAGAAGTAAAGGTAGCAGAATAGAATCCATACTCAAAGAAAAAAAAGCAAAGA
GCCCTTTCTAGCCTCCATCATGGGAGAACCTTTCATATTTGCGCATATGATGCAAGGAGA
GTCCAGTTCGGACAGAACATTGAAATTTAATTCAGTCCATGTCTTGTTAGGAATGTTCAG
CTGAGCCCATTTATGTTTGGAAAGTTGAATGCTTATCTGCTGAAGGGTCTAAAATCTTAG
GAATCATGTGCAAATAGTAGTTTCATATACACAATTTTACTTCACCTTTGAGAACCAAGC
AAGAAACAAATAACCTGTTCTGTTAGTGCAGAGATGCTGCTAGTCTGTTGGAACTGGAAA
CACGAATACTCAGTTTCCTTATTAGTTGGCTTTACTCTTTAGATATATTATGTGTATTCT
ATTGTTGATAACTTTCATTAGATTTGGACAGTCTACATGGATGGGTCAAGTCAAATAATC
ACATAGAAGAGAGAGCATCTGTTAGGCCTAGCGACTCGTAGCACCCGGTAAGGGCCTGGC
GATCTTGTTTTTCTTGCTGCCGGTGGCAGAAATCTCTGGTAAATCATCAATGGGCATGCT
GCACTCTGCGGCGCGCTTCCTGGAATCCTTACCAGATTCGTAGGGACTCTTGTTCTTGCC
CTCCCACCCGGGAGCTTTGCCGGCAGGAGCAGGTGCCTTGTCGGCAAATGCTGCCGCTGC
CTCCCGATAGAGTTTGT