Map Locations of contig_82040 (7609 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_82040

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_78825 14 3950 bp AK369576 Available Available None





CDS Structure of MLOC_78825






Contig Sequence (7609 bp)

>contig_82040 7609 assembly3_WGSMorex_rbca.fasta
GGGTTAAATGGGGAAGAAGAACCCCTTTTATAGGAAGCGGAAAATCCAACCGTTACCCCC
TCAGCCCGCACATGAGCGGTACTACCGCTCCAGGGAGCGATACTACCACTATGGTTGTGA
GTAGCAGATCAAGAGGGAAGCAGTAGGGAGGTAGTACCGCTAGAGCGGTACTACTGCTGC
GTGGAGCGGTACTACCGCCCATAAGGGGTAGTATCTCCACCTACATCCGCTCTAGATCCG
CTGAGAGACCAACCAAGAAAACCTTGGTGAAATTGACGCGGTAGTAATAGGCGATACTAC
CACTCTTTGAGCGGTACTACAACCGAGAACTACCGCTCCAGAAACCGCTCAGTCCGACAC
GAAAAGTGTCGAGACCCCGAGGCAGCAGCACTGGAGAGGGTACTACCGCTGACCTGGGCG
GTACTACCTCGGATAAGAGGTAGTACTGCTCCTGAGAGCGGTACTACTGCTTGAACCTTT
TCAGGCAAAACACAAGCAACAGATGAAAAGCAAACTCAAACTTGTTGGATTCAGGACGAC
AAGAGCTATCCAAGAGCAAATCTTAATGATATAGAGATGTGAAACCTCTGCGAGTGAAGA
ACCGGCAAAAACTCCAACATCGAAAACAGCATAGAAGATGCATATGAACTCCGTTTTCGA
TGAACTCGAGCTTGTCATAAATACGATCATAAGCTCTAAAACTCACAAAGAGAAACACCA
AACAAGAATCAAGAAAACTAATGCAAGAAGGGGAGTGGTGTTTTGGTTCCCGGAAGCATA
TGCTCCTCAGTGAACAGTAACATGAAAAAAAAAATGTTCTCAAAAAATTCTATTTTTTTT
GCACATGATTGTATTAGTGTCGCAAACATGAATGTCAATTTTCATGCGATAAGGAGCAAC
GGTTTTTCGTTGACAAAAAAACAAATTTGAGGTGACATTTTAGGGTAACTTTTGGTGTTC
AATTTATTTTTATTTTTTTGCACAAGCCAAAATGTTTAACCTTTTGCCTCAAAATTTATA
GTTAGCATTTGGATGTGACTATGTACACAAATAAATTTTGTCTTGATTTTTTTTCATTTT
GAACTTTTTTTGCCCCGGAAGCTTCAAGCATGATATCTTCGTGATGCTTTACTTGAACTT
GCACGCTGTAATCTTGATGACGATCACCACATGATGTCATCCTCCATGAATTGTATGAGA
TATACACAAAACGTAATGGACAATGCTTATCATACCATGAGATCACTTTATCCCTCTCAG
TACATCTTACACGTTTTGTGTGTTGATCAACTTGATTTACTCTTTGACTTAATCTTGATC
AACCTTGTGTCTTTATGACCAATCTTTGAATAAAACCTTGAATACCAACTTGATCAGCAT
ATAAACTCTTTAAAACCAACATATGAACTTCAGCAAGTGTCTATGAATAAATCCTTCGAA
TATAACTCAAAACAACCATTAATCTATAAAAATTATCATCAATTATCAAAATCAGATATA
GGGAAATATGCTGTAACAGCGGTCTTTCACTCAGATTCTCGAAAAGTAACGCAGATCAGC
GTAACTCTTCAGTCTTCGTCTATTTAATTAAGTATAATCTATCCCATCCTTGACAAAATA
ATTATCTCAAGCTTAATATATTTAATTAATTATAATCTACCCCATCCGTCACAAAATAAC
CGTCTCACGTTTAATATAATTTTATATTAAAACTAAGTATAAAGTTAGAGGGCTGCTACG
CCTCCATCGCCGGATGTTTAGTAAACATTCGTCACCTCGACGACCGTCCGATCTACACGC
GCAGCCGTCCGATTCGCACGCCGGGCTCCGGCTGATACTCAGTGATTCCTGAAACGACGG
TTGAGTTGTAGAAACAATCGCTTTGTTGCAAAAAATAAATTTTGGACCCATTAATTCCCG
AAAGAGTTTCAGAAACAGTCACTTTGTTGCAGAATTTTTTTCCCTCGTCTTTCCGCAACA
GTAGATGTGTTGTAGAAACAATTTATGAAACAACGAACGGATTGCAAAAACAATTTCTCC
AACTCCTGAAATAACAGTCGAGTTGTAGAAAACAACGACCGCGATGCAGAAAACTGGAGA
GGGGATGAATGACTGCAGGGAGGAAGGCAGAGGGGAAGAAGGCGAGGGCTTGCCCAGGGC
GAGGCGGGGCGAGCCGGCGCAGCGTGAGGTCAGCATCGGGCCATGGGGCAGCGGCCGATG
GCCATGGGAGCAACGTGAGGTCGGCGTCGGGTCATGGGGCAATGGTCGACGGCTATGGAG
CGCAGCTTGAGGTAGGCGTCCGGCCTTAGGGCGCAGCGGCCGACGGCCATGGGGCCATGG
ACCGACGGCGGCGACGGTTCACCGGACTTCGGCAGGCTCGTCACCGCGGGCACAGCTGCG
GGTGAGGAACCCCGGCTTCAGCCCCCGTTCCTGAAACAACGCTCCAGTTTCAGAAAACGG
TCGCGGCCAAATCGCTGGACGCGGGCACGATTTTGTCCGCCAGATGAAGGCAAGATCAAC
CGGACGAGAACGATTTTGTCCGTCAGATGAAGGCAAGATCAACCGGACGAGAAAGTGACG
GATAGATCAACCGGTGGGTGGGAGGTGAGACTTTTCCGTAAAGTTAAGATATGTATTTTT
GGGACGGAGAGGGAGTACGTACATAACTCGTACTCGATGCAATGCAATGCAAGGGATCCT
ACGATACGATTCAGCGGAACGTGCCAGATAAGAAGAGGAACTGCCTGTAGTACAAGATTG
GCAGCATAAGGTTTTGCAGAACCTGAATGTTTACCCAGTCCGTGGGGCAAAGAGATATGT
AGAAACGCTGGAAGTTGCCGCACTCGGACGTGTCACCCTCCTCCTTGGCCTTCATGCACC
TGTGGCACTAGAGGTAGCGCACGTCGCAGTGCCGCGTCTGGTTCTGGGTCGGGAACCGGA
AGTCGCACGGCGCCCACGGGCGGCGGCGTCGAGTCGGCCACGCTGCCGGGCTCTCGCGAC
AGGTGTCTGTTCCACCCGGAGGCACGTGTCATGGTGCGCGCACGTGTACACACCCACGAT
CGTTGCTACGGCACGACACGAGGTTCCATATAGACGTTGATCCAGCCAATCCAGGTCACA
CGACGCCAAGGTTCCAGGCAGCCAAACTGGAACTCACGATCGAATTCATTCACATCATGT
ACAGATAGGACTGACAGTACAAAACTAGTTAAGAGAATTCAACAGGGCTGGTCAATTTCA
TCGGAGAACTCACCATATACCGCCGATTGGCTCAGCTAATCTGCACTGCATCAGCACTTA
AAATACACAACCTAGATCTAAGATGCTTTTGCCAAGTTCAGTGTAATCCTTCACAATATC
ATCATTGAAGCGGACAAGGAGTGGGGTTCCTGATGTTAGTGTGATGTGAAATGCAGCTGT
TGCAGTGCTCACCCTGCTTTGCTTTCCCTAGCAAGTTATGACAAAAACGTAAAACAACAT
CTCAGTGTGCGACAAACCCACAATGCCATATTACCTCCGCTTCGGAAATAACCGACGTGG
TTTTAGCTCAAATTTGAAGCACATAAAAGGAAGCCACGTGGTTTGAATGAAACGCATAAC
AAACAACACAAGGGTACAGGATGTATCTTAAGTTCGTAACTCTACGTTTGGAACACGGAA
CAAGAAGCCAGGTGGTTTGAAACAACATGAAAAAATCAAGCCAGGTCTGAAACAATACAA
GGTTGCATCGTCAGAACATGACTTAGATTCATATATAACTATAACTATCTAAAACACCAC
ACACATGTTCTGACTTAGATTCATATATAACTATAACTATCTAAAACACCACACACATCT
GATATCCCTACCTACGCTAGACATTTGATGATTCGGTCCTCCATAATGATCCACAGCAGA
ACACACACCCTCAGCAGTTTATTCATGCCCAGAATTTGATGATTGGATGCTCGAGCAATT
GCTGGGAATTTATAGTAAGGCATGAATATAGTACTCAAATAATTTGATGATTGGATGCTC
GAGTACTATATTTAGAGCACTAGAATGGTAAGGCAGATTAAATTCAAATAAGCTTACAAA
CCTACAAAGTTCAGCACCTTAAAACAAGCATGCTCCCACCGGCACATCTGAATATGCATA
TTCCAGATTCTAATGATAATTGACAATAGTTAAAATCATGAAGAATGGTTTCAAGACATT
TTAGCTGAAACGGTAACACAGATCAACAGAAACCTGAAATTATGCCTATGCCACTGCAAA
CGTCATTTTTTTATGCCATGATGCCCACTGCAAATGTCCGCTTCAATACCATTACATTAG
CATCATCATCTGTTCATTTCCTATGTTAAGAGATATACTCCATTACAAAATACTTGAATT
TCTATGTTTATAAGTCAAATTTCTGTATGTTTGACCAAATCTACAGAAAAATATACCAAC
ATCTACAATGCCAAATTAGTTTCATAAATATTCATCATAAATAAATTTGCATACTCCACA
TATTTGATATTGTGGATATTTAAAAAATCTATATTAGAAACTTGAGAAATCTCGACTTAG
GAAAACCTAGTAATTCCAATATTTGGAACAGAGGGAGTACTCCATATGAGTTTTCGAAGA
CTACCGAGACAACTACTGCTCACTCGAAATGGCCTCAAAAGCACTAAAATTCATCATGTC
TCATGGGGCATGTGGGGGCGAGGTGAAGCCCACATAATGCGGTGAGAATGTGAGGCAGAA
AGGGGCTGTGTGGGTTTCAGGGTTTCCAGCTGGGGTTCCCACGGTGTGGAAGGACTCTAT
AGTTGAAACTGAAAATAGTCTTAAAAATGCCACCATTTCTTCACTGAAGACCAAAAACTT
AAAAATGTTAGTGAGTATACCTTTTGTTTAACAGGCAACAGTGGGTGTGCAATTTCTAAA
AACAAAAGTACATGAGCACATGAAGGATCATCGGTCTAAGAGCACAAACACCTATGGTCT
GATCTTCACAAAATATATCTGTGATTTACATCATAAACACAGAGACACAACAGATTAGGT
TATCCAGCACAATTTCTTTGGTTTCAGCAGTATCAACTGATTCTAGAGGACTAAGAACAG
AAATGACCAAATGAGTCAATTGCTGATAAGCCAAAACTCAATGAGATGGAACTTCCAATA
CTCTGAAAAATCATTACTCTTGCCAGTTATTACCCTCAGGCACATTGTGACACATATTAT
CAACGTGGCAATCAACAAACGCAAAACACAAAACAGAGCATGATCAACTATCTTATCTGC
TCTCATATGACTACATATAAACAATTAACTCTAGCTGTGATCTCTCTCAAAAACTTCCTC
AGGACAATCAATCCATAGAACCAACAAAGTATATTTCTACCATAACCACTCATCTAAGGC
TAGTTATTCAACAGGCTTCAGCACCTATTCATAATCATTGTCTAGAACTCAAAGTTGAGC
CAAACAAAAGCACTTTCTATCCATTCTTGAATAATAAAGTGTATCATAAAATTATAATGA
GACCCAACACAATCGAAATTATTTTTTGACATTGTAACTGGGTCATTTTCAAGTCTCACT
TTAGTTACATATAGCTTGCTTAAAAAGCAATACATAGCTCTAGAACTGAATACTGAAGTG
CATAACAAAAAAAAGGAAACAAGAAAGTTGGCACCTCTTGAGACTAATGTTGAAAGAACC
ACATAAATCTCCACAATGAAGATCAAGATTGAGCATTTGCCCTCTGCAAAAATGATAGAA
AATGAATCTGAAGCAATTAACTGGCTGTACAAAAAATGAACTCGGTTGTTTAACCTGCAA
ATAACACTTCAAAAGCAGTTGATGTTTGGGCATGACAGTTGCATTATGGCACCCACAGTA
CAATAAGATACATAGGTCCAGTTCTGAATCATCACAGAAATATTCAAATATACTTAGGTT
ACAGAGGTAGAAAAGCTGGTTTGCAAACAGGAAAAGATAACGGTTCAATTGTTATGATGT
TTGTACCTCGTAAGTACTAATCTCGACACAGTAGAAGTTGCCCTGAATTGTACCCAAGAA
GGATCTCTGCTTCTTCTGCAGCAGATTGCTTCAGTGAGATGCATAGACGGTGTCATTTCT
TCTTGGAGGTCTATCAGGAACCGATCCTGGCTTAAACTTTGACGCCTCATGCCTGGCAAG
TTCTGGAGGGACGGGACTATTGCTCTGAGTAAGCATCTGTTTCAGATCGAAGAAAATATC
AGTGTTATCCAGAGTTAAGAATGAAGTCGCGAGTCCCTTCTTTCCTGCACGCCCTGTTCT
TCCGATGCGATGTGTGTATGTATCAACTGAACTAGGCATCTCATAGTTAATAACATGAGC
GACATCAGGAATATCAATACCACGCCCTGCAACATCAGTCGCCACAAGAACATTGAACCT
GCGGTTCCTAAATCCATCAAGGCTAATCTCCCTCTGATCTTGTGACTTCCCTCCATGCAG
TGCTGTGACGCGGAAACCTGCCTTGTCCAGATCCTTAGCACGGTTGTCCGCTGATTTCTT
TGTGTTGCAGAATACAATGGCTGTCTTGTCCCCGAGATCTGTGAGTATCTTCTGGAGCCG
TGACATCTTCTCTGACTCCTTCACCATGATCACGTTTTGGGTTATCAAATCTGTGGCCTT
GCCAGCTGTACCAATTGTGACGACAACTGGGTTCCGGAGGTACTTCCTAGCAAGGCGCTC
AACAGCAGGTGGCATGGTGGCACTGAACATATAAGTTGTCCTGTAAATCCTCTTCTCATC
CAGTTCCTCTTCCTCATTCTCAGGTTTCAGGTTACTTGATGGCATCGCATCAAGGACACC
AACAACCTGTGGTTCAAATCCCATATCAATCATCCTATCAGCCTCGTCAAGTACAACATA
GTTGCACTGGTTGAGCACAGCATACCTTCTCTCCAGACAATCAAGAAGCCGACCAGGCGT
TGCAATTACAACTTCGCAGCCCTGCCTAATCTTGAAACCTTGCTCCTCAATCGACTGACC
ACCAACAATGGAAACGACTTTAATGCCTAGATAGGTTGCAAACTTGACCGTCTCTTCCTC
AATCTGTTGAGCAAGCTCACGAGTAGGTGCCATGACAACAGCATAAGGACCCTCGGCCTC
ATTGTCCTCGCTTATAGGCGGCAGGCGAGTAATGTACGACAGCATAGGAAGCACAAAAGC
TGCAGTCTTGCCTGAACCTGTCTCAGCAATACCAATGACATCACGCTGCTGGAGACCAAG
CGGAATGGCGGCCATCTGGATGGGTGACGGTTTCTTGTACCCAACCTTCTCAATAGCACG
AAGCAGCTCAGTCCCAAGCTTGCTCTCGGGCCAGTTGCGCATCGGCCGGGGTATGCGAGA
TCCCTTGTAGGAGATATTGAAGTCCTCACGGAAAATACGCCAATCCCGCTCGGTCATCTC
CTCGATGCCCTTCTCGGACCAGTGCCTGTCCACACGCATGTCAAAGGCATCATACATCTC
CGCGGCCGCGGCCTTCTTCTTATCAGCCACATCATCCTCGGGCCGGTCCTCCACGCCGAA
CTTGCGGCGCTGCTCGGCGCGTGTCTCCTTCTCAAACACGGCGGCCGCC