Map Locations of contig_81807 (3960 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_81807

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_78762 1 425 bp AK375791 Available Available None





CDS Structure of MLOC_78762






Contig Sequence (3960 bp)

>contig_81807 3960 assembly3_WGSMorex_rbca.fasta
AAGGTTGCATAGTAGACATCACACAGCAGCGCCTACCCCGCTCCATCGCAGCTCAGAGCC
ATTGGTGAAGCTCCATTGCAGCACCTATCCCGCTTCATCCCAGCTCATTGCTGCCGGTGA
AGCTCCATTGCAGCGCCTACCCCGCTCCATTGCAGCTCAGAGAAGCTCCATTGCAGCACC
TCACGCTGCATCACAGCTCCGGGCTCGCCGGTGAACCTCCATTGCAGCTCTGCATGCATG
CTCATTGTAGCTCCGAGCGCTGCCGGTGAACCTTCATTGCAGCACCGAGCTCCGGGCTTC
CCTGCAAGCACTGCATCGCAGCATGACGAGCCACCAATGAGCTCTTCGTTTGCAGCACCG
TCGCGCGTGTGCAATGACGACGGGTTAATGCGATGTAGCTCGCGTCGGGCTACTTTCGAT
GTTGTGGTGGAGTTGCTGCGGCGGAGATGGAGCATGTGGTGGTTGTCGTCGTTCCTCACC
CCGTTCATGGTAGTGGTGAAGTGGATGGGTGGTGGCGCGGTGTGAGAGAAGTGTGCAGGG
TAGGATGAGAGAAGAATGGATCTAGAAGAAGAACGGGTGGACGAGAGTTGCGCGTGCGGA
AATGCAGATAAGGTTGCGAGAGGATGAGAGGTAGTGGACCTCAAGGGACACGCGTCGAAC
GGGAGATGCGGCGGACGCAACGACTAAATAAGCCGGTAGATTTAGAATGTTTTTCATAAA
ATATAGGATGAAATGCCTTAAAATTGGAGCTGCATAAAAATGAACTTTAGGGATGAACAG
TACATATGCTAGAAAAAAGGTATAATTTATCCTTTTTGTGTAGCCTTCTTTTAACATATT
TTAACCTGAAAATTTACAAACATATATACATTATGTCTCTAGGTATATGTTTATTTTTAC
AGATTGTTTTAAGATCAAAAAGTTTGAATTTCAAAGCTTTCAAATGAAGGCCTCAATGGA
GCTCGGCTTCCATTTGACATTTCCATTCAACATAAGATCAACTTTGTTTACGAAAAATTT
TCATACTTTTTTTACTCTTTTAGAATTACCAAATAATCATATCAGGTGCACTTGCACCCG
AGAGCCGGGACAAGCACCTTTGGCTCTCAGGTGTAGATTACATCCAATATGGGAAGAAAA
CTAGTAATTATAAATTATGTCATAAAACTATAAAACTTGTTGCTGATGAATGACTTTCAC
GCTATTTTAGTGTCAAAAAATCAGCACTATATACAAGTTAATTTTCATGCATCATGTCTT
TGATTTATTTTTTACTAAAGTTGACGGTAGATTTTTCTTCACGAAACTTTTTATATAAAT
ACAATTGAAGGTCAAGTCTGTTTCCAAAAAAAATTCAGATTTTTTTTTGATTTTTTAGAA
TTACTATTTTATTTTTCATATAGGTTTCACCTACACCCGAGAGCCAAAAGGTATTTCTCC
GGACTGAGAACGCTATGTTTCGGATTAAGGATTTATGCGCGCGTGAGCTAGCTTGCTAGG
GTAGTCCAAGATGATGGTAACTCGTGGTTTTTTTCATCTCTCCCCACAAAAGGCTTAGCT
TAGACTTAAACTATGTCACCTTTATTTGCTATCCTAAGGCTGGCCATAGTGGGAGTAACT
AAGGTAGTATAATGTACTTGGGAATATCAAACATGCTGATTAAAGAAGAGAGAGAGGTTA
GAGTAACATAGGTAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCATGCATGT
CAATAAATAAGGACATCTATGTTACTAGTTTATGATACTATGCACTATGAAAGAAGTATC
ATACAATAGTATCATATGCATGATACTAGTATATTACTCCCCACTATGACCAGCCTAATA
GAAACAAGAGTGATCTTGTCAGTTTGGAAACAAGAGTTGTCTTATTAATAGCAAGGTGTA
CCTTAACAAAATTGATTTAGTTCATTTATCTTATCTTAGTGGACGAGATATCTTTTCGTT
GCCTTTTCCAAGTGGCTGTATTATTTGATTTAATCCTTGTTTTTCTAAAATGTATAACTC
TATAGTTTTATATGGGGCCTAAGCCGAAGATGTAAAAAGGACTTCACTTGGCAATTTGAT
ATCTCCTCAAAAGGGCAGAAGTTGTACAATTTGTGCAAAAACAAATAATCATATGGAGAG
GTATGGTGTGATAGCTTCCTTGTATATTTTTTCCTTAATTCTTGCTAGTAATCTCCTATT
TCCTATGAAACTGTTGGTTCACAATCAACCCTTCAACATCCCGATCAACAAATTTTACAG
CAAAGACGCCATTAAAGAAATTGAGCCCCTTTCCTATTTATAGCTTCTACAAATAAAATA
TGTACATGCCCCTATAGAATTGTAGTTATTTCCTATAAATATAACTGTGTCTGCCATTTA
TCAGTTGATTAAAAAAATTCAGCCACGTCAAACGACATGTACCAAAGAAGTAGGCGAGAC
GGTGCTAAGGCAGAGAAGGAGGTGGCACTGCCCATCACGGCGTCTCCAAGATGCAGAGCT
AGGACCTGGACGAAGGCAGGGGCGACACAATTTGTCATGGCATCGTGTGTAAAGGACATG
TAGGATGCAATGGGTTGTGGGGTCGGGTGGAGGTGGGTTAGAGGGATGACCGACAATGGT
GACGGCAGCTTGTGCTGACCAGGGCGGCGAGGCTGCAGTGCGGTCGTTCATTTGTGGTGG
CATTGGGCTTGGAGGAAGAAGAAGCTTACAGATCAGATGGATGCATATTAGATGGTGGGA
GGAAAACTGATCGAAAAAAATCGTCCCGAGCCTGAAATAGTCACTCTCTCAAGTGTAGCC
ATAGAAGCTTGGTATGGTTTTGAAGATCCGGAGTTCCATGTGTGTTGTGTGATTGAGTTT
TTTCTGTCAATTTTAAGGCCTTTGTTTACTCTATACTTTGAAGACCTTCATTCTACACGT
CTTCATATGGGTTCTTTGAAAAAAGGAGTTATATTGTATGACATGAAAAAGAAAAAGTGC
ACATGATGAGATAGAATGACAATATTTGTTTTTCTGCCGGAGTCCATAAACCTACATCCA
AGACATTCAGGTAGGTTAATTATTTTTATTTCTCAATTTTTTTACTTATTTGTGTATCAC
TACATTGTTTCAATCATCACACTGAATATTGTTCTCAACACGTGGGTGGTGCACAACATT
TAATCTTTCTAACGTCAAATGCGTTTTTGCATTATGAGACGAAGTGAATATTTTTTTTGT
TTTTAAATAATTATAGTTAGAAAAAACTAGTCTCTTTTTAATTAATTATAGTTTAGAAAA
ACTAGATTAATTCTTTTAACTAAAATTATCTAAATACAAAAAAAGTAGTTACGAATAAAA
GTCCCCTTGCCTAAACAAGAAAAATCCCTGTATGCGTTTTTCTTGAAGGAACATCTCTGA
ATGTCGATCCTTGAAAAAATATCTCTCTGCTGCCTCGGATGACATGTGGGCCCAAGACTA
CCGCTAAACAATTCTGAAGGTGGAACCTCTAGAAGTTTCTCCATCAGCGGCCGAAGCATT
CCCCTCTGCTCCGCGCTCGTTCCACCACCTTTCAGAAGTTTCCATCACCTTCCAGACTCT
CCTCCGGCGACCTACATAAACTCCCTCCTCCTCCCATCGCATCACCACCGTAAAATTCCA
CAAGATTCAAGAAACAATCCAACGCAGTCCAACCCGAGGAGATCGATCGAGCTCGAGATC
AGCCGGCAAGAATGGCGGGCATGGTGTTCGGCTTGGAGAACCCGATGATGACGGCGCTGC
AGCACCTGCTGGACTTCCCGGATGGCGAGGCCGGCGGACTAGGCAACACCGGCGGCGAGA
AGCAGGGTCCGACACGCACCTACGTCCGCGACGCGCGCGCCATGGCGGCCACACCGGCCG
ACGTGAAGGAGCTGCCGGGCGCGTACGCGTTCGTGGTGGACATGCCGGGGCTCGGGTCCG