morexGenes - Barley RNA-seq Database

Contig contig_81435

Source Contig contig_81435

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_81435 (2601 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_81435

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_78686	3	862 bp	MLOC_78686.1	Available	Available	LOC_Os08g37180.1, FRAME:+3, EVALUE:8e-140, 13108.m03909 protein patatin, putative, expressed

CDS Structure of MLOC_78686

Contig Sequence (2601 bp)

>contig_81435 2601 assembly3_WGSMorex_rbca.fasta
TTCGACATCAAACTCCTGCAGCCCACAATCTTCTCGACGTACAACGTATGTGATGTGTTA
TGTGTGGACAACAGATTAATAAGCAGCATGCATGTCGCTTGCACGGTTGCACCACGCCTG
CTGATTTATATATATGTATGTAGGCCATGAAGGATAAATCCAAGAACGCTCTTCTATCGG
ACGTCTGCATCAGCACATCCGCCGCACCGACATACCTCCCCGGCCATCACTTCCAAACGG
AGGGCAAGGATGGCAAGCTCCGGGACTTCAACCTCATCGACGGTGGCGTCGCCGCAAACA
ATCCGGTGAGTCCGTCGTGCTAACACGACACGCCAACTCAATTAGTGAGATTTGCAAACC
TAAATTAATTAGCTTATCACCTAGCTAATAGTATAACAGTTAAGTGTGATCCGGTTATGA
TGTTGATGTATGGAAACAGTTGACTATCATCCGGTTGCGATGTTGATGTATGTATCGAAA
ATTCTCTGCCTGACAACTGACATGGATACATTACAGACCCTGCTGGCGATGACGGACGTA
AGCAAGCAGATCCTGATGGGAAACCCGGACTTCTTCCCCATCAAGCCCGCGGACTACGGC
AAGTTCATGATCCTCTCGCTAGGCACTGGTACTGCCAAGATCGAAGAGAAGTTCGACGCT
GCCGAGTGCAGCAAGTGGGGCCTCCTTGGGTGGCTCTACAACAGGGGCGCCACACCCATC
ATCGACAGCTTCAGCCAGGCCAGCGCCGACCTTGTCGACATCCACGCTTCTGTGCTCTTT
CAGGCGCTTCACTGCGAGAAGCGATACCTCCGGATCCAGGACGACGAGCTCAACGGAGAG
ACGGCATCCGTTGACGTGTCAACGCCGGAGAACCTCCATCGGCTCGTCGACGTTGGCAAG
GCGTTGCTCAAGAGGCAGGTGTGCAAGGTGAATGTCGAGACGGGCAAGAACGAGCCCGAC
CAAAACAGGAGCACCAACGAGGAGGAGTTGGTCAATTTCGCACGCATGTTGTCAGAGGAG
CGCAAAGCCAGGCTTCGGAAGGAGGGCGATGTTGAATTCTAGAGAAATGGGACATTTCTT
ACTACTGGAATTTGATGAACCGACCAGCACTATATATATATAAATTATTAGTGTATCATA
GAGTTGATTTTGTTGGTTTCTTTGAGACTAAAAGACAGACCATTGATAGCCATATTCTGA
AATCCATTGCTTGTGGTGGTGATTTCTGCTGGCATACCTTACCTGCTATTAATACTGCTG
GTGGCATTCTTTGTTGAAATTAGTAGTGGGCCTTAGGTCCATAAAAGAATTTCAACGCCG
TTGACGTGTCAACGCCGGAGAACCTCCACCGGCTCGTCGACGTTGGCAAGGCGTGGCAAG
GCGCTGCTCAAGAGTCGGGTGTGCAAGGTGAACGCCGAGACTGGGAAGAACGAGCCTGAC
CAAAACAGGAGCACCAACGAGGAGGAGCTTGTCAATTTCGCACGCATGTTGTCAGAGGAG
CGCAAAGCCAGGCTTCGGAAGGAGGCGATGTTGAATTCTAGAGAAATGAGACTATTCTTA
ATTAGGGTTTAGGGTTTAGGGTTTAGACAGTAGTACTAGAATTTGATGAACCCACGAGCA
CTATATATATTATTTGTATAGATCGATATAAATGTTTGCGTACATATTCATTAATTTGTC
CAATATTCCCTGTATAAACTACTGCCTGCTTGCCATGGATGTGCTAATTTATGAATAATT
TGTTTCATTGTTCCTACATGATGGGTAGCTATCACTTAGTTTTTTATTGACCTTGATTAG
TACAGCTAACCGCGGAGTATGGACAACCATCGTGGACAGACTCCACCAGATGTAACCTAA
GCAATTAAGCTATGTTCAGTTCGCTCAACGAGACTCAACTGGGAACCGTTTCCCACTCCA
CAAAGTGGGTTATTCATCTGGGAACCGTTTCCCACTCCACAAAGAGTCAAGAGTAAGGCA
TCATGCATGTGGACAAGGAGGAGGCCTTGGATATCTCAAGAAATGAAGGCCTTGGAGCAA
ATTACTAGGAAGGAGACTATAATACTCAATTCTCCTAGTATTTTAAGGTTGCCATTGTAT
TGTAGTCCTATAGTATTTGAACAGATCCACCTTTTGATTTGAAGGGTAATATATGCACTT
ACATTATATATATTTTCTTTATGTCTGAACCTGGGCTCTTTCAGCGATTTGGGCAAGCCG
GCGAGCCGTTGCGCGACCACCGAGTCCGGGCGACGATCGAAAGAGTCCTTGCCGGCAAAC
CAACGACGACGACTAAAGGATGAACCAGTACCTGCATGCGACGCTGACGCTTTGTCGGGG
CTATGCGGGGTGCTCCCCAACCAATCCATGGCTTTGGCGAAGCCGTCGGTGGCTGGAAAA
GCCAATTCCGGTGGCCGGGACAAAACAACCGTCGATCTGCAGCTTTCCGGCCAGCCGAGG
TACGAGGGAGCGCTGGAGGTCAATCTAGGGCGTGTGGCGGCCGGCCGGCGTGATCCTGGC
TGCTGGTCTGGCCGGAATCAAAGGCGGCGCTCGGCGGTGGTGGGTGGGGGAGTGTGGGCT
GAAATGTCCCACCCACCAACC