Map Locations of contig_81346 (7844 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_81346

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_78666 1 1089 bp MLOC_78666.1 Available Available LOC_Os02g58300.1, FRAME:-2, EVALUE:5e-93, 13102.m06753 protein expressed protein





CDS Structure of MLOC_78666






Contig Sequence (7844 bp)

>contig_81346 7844 assembly3_WGSMorex_rbca.fasta
CGTAGGCAGGTGTAGTATCGATGTAATCCAAGTACCCTTGTAATCCTTTCCATAGTAATA
AGGAGCTGTTTTGTTCTATGCCAACGGTGTCGTATTCCAGAAGACTTGTCCCTGGGCTGG
AATACGGGGCGTTCCGGTTCCCGGCCAGGTGGGCCTGGTTGAGGACCCCTACGTCGGTTT
TGTCCTACGCCACGTTGGGCAGCCCATGACACATTGTATGAAGACTCCACGAGACTTGGC
GTACAAACCGAAGATACCGAGGCCGTGGAGGACTCTACCTCTACATACATAGCCGACTAG
GACATGTAATCCTAGGAATCCCAATATGCTATATGGGTCGGGCTCATTGATAGGCAACAC
TACAATCGTTTGGTATTTACCTATACTATGTATGCACCGCTATAGCAATATACACGAGCA
GGAGTAGGGTATTATCTCCTGCATGACAACCCGAATGTGGGTAAAAAACCTTGCTTCATG
TTATCATTCAACCCAATCTCCTAGGCGGAATACCCTACTCAGGGATTTGGGGGATTTAGA
TATGATACACATCTTGACATTGTTTGTATGCTTGCTAATTAGATTGCTTCCTAGCATACT
TGGCTTTGAGCTTGTGTGCCGCATATGTTGTGTTCATCTAGTTGGATACCTAGAGAACCT
ACTTTATCCACAAATTCCTAAAATTGCTAATTAAGCTTAAATTTTGTAGTCTCCTATTCA
TTATCCTCTAGGCGATTGTATCGATCCTTTCACATAACCATACATATATGATAAGATTTG
AAGATTCCGGTCGTTTATTAGCTCCACCTCTCTAATAGTTGGGCTCAACCGATCAATGAA
AAATCAAAAGCATGTGCGCCTCAGGCATATCATAAAAAATATAGTTACATATGAGAGAAA
CATAACATGTGATTTTCAACAATTTTGGAGCCCGGTTCTCTAAACTCTCACTTTCTTGAA
GCATCAATAAGAAGCGGAAACTATCAGTTTGAAATAAGACGTTCCTTGTAATTATGTACG
ATTTATATACTATTTGAATGAAGCCTCTTATTTTTGCAAACCCGAAACCTCACCCTTAAA
AATCTTAAACTAGCGTGTCTACAATACAAGGCAAATAGTTGCACCTGATTTTTGCAAGGA
TCATGTCTTATAAAGGGTTGGACTCTTAATAGAAATGGTCAAATTCATGGAAACTGCTAA
ATTTTGGCTTGTTTACAAAAGACCAACTCTTGATAGTCGGCTTTTAGCGTGTTGTATGCA
CTACTAGAGAAAAACCTAGTGGTAGCACGGGTTTTTCTCATATCAGTAGCGTGGGGACCC
ACTCTACTGCTAGGGCGCTACAACTAAGAGTTAGCAGTAGCGTGAGCCATGCCCTCACTA
CTCGTAATTAACATATGAGTAGCGCGGTATTGTAACCTTGCTACCTCTAACTATTAGCAG
CGCGACTCTATACCCCCACGCCACTACTAATCGATCATATTTCATTTTTTTATGTTTATG
TTGTATGTATACATGGTTATACATATTAATATATAAGATCAATAATAATTGTGCAAGAAA
CAATATTTAGATTAAAGTGGATGGGTGCAAGTGACCAAGTTGAATTAGAGGAAAACTAGT
AAAAATGCCCGTGCGTTGCAACGGGGTAAACATTTTATTTTATTTAAATTATTATTTTGA
TTTTGATATATTTTCATTTTGACTTGTCATATTGATGGCGTGCATTTACGATTACACTCA
CGCAGCATCGGAGTGGGCCGTTCGACACTTTTAATCTTTGATGAGAAACACTACAAAGGA
GAAAAGAAGACGTTGAGTGGATAGTCATTATAACGAAGATTTTTGTGCATATGTTGAATT
ATCCACACATGCACATTATTAACAAGCGTTTGTACAAACACTGAAATTATGCATCCGACA
ACTTAGTTTCTTCCTTATATTGATTCATGAGACAACTCCTTGATACTCATAATATTAAAG
ACGTATATAAGTTGTGAGAATTGCATGTAACCAAGGACTAATAGATGAATCAAGCATTGT
GGGACTGCGAGTTAGTTTGGATTAAATATAGGGGGTTTTGTGAGCGGTACAAAGGCAACA
TATATGACTTCTCTATAGTGCTTGGATCGTTCAGATCTACGGGTTCAAAAGGTGCCACAC
TGCTCCAAAGTTACACAGAGATATAATATCTAAAGCACCACGAGATGAATTCTGATAATA
AAGAAGTGGTACAAACTGCATCTAGTAACTGAAGTTTAAAGCCCACCTACAGGCAAGGTG
ACAGCAGATCTCCCAGTAGTTTGAAATGCAAATACCTTATATGAGAAAAGATCTATCTTG
TGTCCTGAACCGAAGGAACTGCTAGATTCAGGCGGCCACAAGCACATGAAGAAACACGAA
CGTCGGGTAGATTTCAAGTAAAAGAAGAAAACAATGACTTATCACCCGCTTACAGGCGAC
AACACACTGTCCCAAGCAGGCATTGAGTTACGCTTTTATCTTGGCGAGTGCGAGCTGGAA
GGCGTCCGCCTCGACCTTCTCCCACTCCTCCTTGGCATCACCCTTGGCAGAATTCTTCAT
TGCCATACCGAGCTCCTTGGCATGCTTCACCTTCCTGCTCTTGACCAGCCCTTAGATCAG
ATCATTGACAGCCTGGAACGGCGACGCCCACTTGTTGGAGTGTAGGGACAAACGCGTTGT
TTTCGACCAGCGCCTTGATCAGGATGATGTAGGTCTCGAAGTTGGGCGACACGCCTTTCC
CATTGGGCCTTGGCACCTCCGGCGTCCTCTTGAACAACGCCACTGCAGCGCCCACCTCCC
CCTCATTGCAGAGCCCGCCGATGATGGTGTTGAAGCACTCCGAGTTAGGCGGGACGCCAT
TGGCGGCCATGGCCTCCAGCATCTCCTCTGCCTCGAAGCTCCCGCCCTTGGCGCACAGGC
CGGACATACGGAGCTTGTACGTGATGACATTGGGCTTGAGCCGCCTCTTGCCACCGGTGA
CCTCCTTGAGCAGCAGGTCGAACGCCGCGTAGTCGCCTCTCTTGAGGTACCCTTTGAGCA
TCTCGTTGCAGGAGACTATGCCCGGCTGCAGCTCAGCCTTGTCGGTCATTCCGTCGAACA
CCTGGCGGGCGCCGACGACGTCCTCCGTGGCAACCATGCACTTGAGGAGCACGTTGTGGG
ATACGACGCCTGGCTCGATGGAGAGCTCGACTGAGAGGTCGCGGAAGGCCTGGATGGCGC
GGGCGGGCTGGCCGGCGTCGTAGTAGGCGGCGAGGAGCGCTGAGAGGGCGTGATCGGAGG
GGGACACGACGAGTTGGAAGGTGGAGAGGGAGTGGGTGGGCATGCCGGCGGCGGCGTAGA
GCGAGATGAGGCAGATGAGGAAGCCCTCGGAGGGGTCCGACGCCAGGAGGGCGGTGAGGG
AGGCGGAGACACGGAGGAGACGAGGTCGGGGTGGGCGGTGGCGGTGAGGCGGGAGACGGC
GAGGGAGAAGATGGAGCAGTCGCCGAGGAAGGGCGTGTGGGGGATCCCCTTCTAGAAGAG
GGCGGCCAGCTCGTCGGGCGGCGTGGCGGCGCTGCGGATGGAGTTCTTGATGTGGACAAG
CTTGGCGGGGTTGATGGTGTATGCAGGGGCTCTTTTGTAAAAACGAAACGTTTTTTCCAC
TTAATGAAGGACCGCGGGTTGATTACGGAAAAATAGGAGGACGTTTTTGCAAAACTGCCA
TGACGGACGACCAGAAACTGTATTTGCTTTATTATTAGGGAGAGATATGATGTTGCGAAT
CAAAACATCATATTTTCCTCTAATTCAACTTGGTGTATTGCATCCATCTACTTAAATCTA
ATACATTTCATATAGCAACTCATCATCATCTAAATCATGCCAAAGTTAAAATGTCGTAAA
ACAGAAAAACAACTCCTCATTATTCTAGTTGTTATCATACTAGTTAAACAACTCTTCATC
ATTCTAGCAACAGACTAGCAAGTGACCAAATTATGACAAGTTAAATAACAAGCTGCAAAG
GTATCACAAGTTACCAACACTAACTACTGCTCTCTCTCCTAGGTAAAATAGCATAACGAT
AAACTCCTCCATCTCCCATTGAACAATACAAATCAACATATCTCCAACTTGTGTGATGCC
CAAGTTATTGTCTCCATGTGTTTACCTGGATGCTTTTATTTCCTTGCTCCATCCTTTGAT
TTTTCGGGTTTCCTCACTTAGAGATATTGTGTATTTACCAGGGTAACTCATTGGCATTGG
CCGTAAGCTAACCATATGCAAATCACCTTTGGTAAACATCACTTTAGGCACGATCTCTAT
CAGAAGTACGTGTTGAACAACATAAGTAATAGTAACATAGTAAGCAAACTAGTTTTTCTT
AAGAACAAAGCATGAAAAGATGGACCAGTGACACAATAGTAAATAAATTCTTACGAAGTT
GTCTGAAGTGATGTTATAGTGGTTCAACTTGTGCACTAGTGGCACATATCCATGATAACT
GTTTCCAATCATGTAATTGTTCTTATAATGCTCAACATCATAAATAAATGAGATCAGATG
ATTTTTCTCCAACCAAGTAAGCTCAGAGTCATAACTGTAGTAGGTCCGATCTACTATGTG
TCGTGTAGTTTTTAAAGCAGATAAATGAGATGATAATTAAAAATCAATAAGTTTAGCTGG
GATGAGTAACTAATATATATAATTTACCTAACAAATTTGTTGACAAACTCACCTGAAGGT
AGAACTGGAATCAAGTGATCCACATGCACCCCAATTTCAATATTATTATCACGGTCACCA
TCATGTCCAAGATCTAAGGTATTGTTCATGTCCTCTTCAAACCCTTACGCCTTGAAAAAT
GCTATCCAAGAAGAACAACCAAAATATGTGTGATCTACTCTATTTTTTACCTTAACAACA
AAAGTGTGAAGGTCCGTCTTTAGGTGAGCTATCTTAGTCTCGGTACTCTCCTTCTCATTG
AAATGAAACTTGTCCAAGACATGGAGTCTTGCATGGGAGGTAACACAATAGTCGAATTGT
ACAAAATAAAATTACAGGTTAATTAAAGCGAAAAAGCACACATCATACTTCACTACAAAG
TATACATGCCGTCTTTACATACCGTAATAATTTCAAAGTCCTCCTTTAGCTTGACGGTGA
AGGATATACCGTTGTCTAGGTGAGGATAATGGTCGCATATACCCCTGTCATCGGTGCACA
TATAGCACCTAGGGATGCCCATGTCGTCAGAACTTTCCTATGTTCATAATTCAAAGATTA
AAAATCAACGACAATTATACCAGAAACTATTCAGCATGGGTTGACTTTCGGTCCTTAAAG
GTTTCCTTGAAAAACTCTCATATCTCATGGCGTATATGATGCGCACTCTCTCACACTGAT
ATTGTGGTGTATGTTGGTGGACACTCCCTCACATTATTATTTCGACCGTCAGTGATGATC
ACTCCTCCCTTCGTACTTGCGTGCATTACCAAAATGTCTAGCACACGGGAGTGAAGGAGG
AAGCGACCCCATGAAAACACTCGGGATTCTTCCTCTGATATTTCGACTACAGGTGTTGGT
TGCTTCTTCCCCCTCTCTCGCGCATTATACCAAGGTATATATCGCGAGAAGAGGAAGAGG
AAGCAACCCCCACGACAACAATCAAGATTCTTCCTCTGATATTTCGACCGTCGGTGCTGG
TTGCTTCCTCTCCCTCTATCGCTCATTATACCAATGTATATATCACGAGAAGAGGAAGAG
GAAACAACCCCCATGACAACAGTCGGGATTCCTCCATCAAGAACAGACATGGAAGTCACA
CAAGGAGCTCCGATAGACTGAAAGTACCCTAATAAGCATAAGACAATTAACATTGCATTT
ATGGAGTAATGTTCTAAGAATGACCTATGTTTTGTCGGAATGTCATCTAATTCCCGTTCT
ACCAAATCACGGGCAATCGATATTTCCTACTTCCTAGCACAAGTCATGCCAAAATTCCGG
CATGACATTTTCTAAAAACAGGACATATCGAGCGCGTGAAATTTGCCAGAACGAAAATGA
ATCAACATTATGGCAAAACATAGGACACTTGGAGGTGTTTCGTGCAATAGCACACACACA
TGTCAAATATACCTATTCTTTTACTAAAAATTTCTAGACCTAATTTTGTTACTAAAAATT
TGCAGACCTGTTTTTTTACTAATAATATCTAGACATAATTTTTTTACTAAAAATTTATAT
TAGTGAATTCCTAGGAAATTTGATACCTAAAAATTTCTCATATACCATTCTAATACATTT
CTTAGTGAATTCCTAGGAAATTTGATACCTAAAATTGTCTATTCTATATAAAAAACCTAC
ATTCTACAAGCAAGTTCTACCAATTCATTGGATATTCTACAAGCAACAAACCTACATTCT
ACATGAATAGAGGGAGGAGCGAGGGAGGTAAGTAGAGGGAGGGAGGGAAGTGGAGGGAGG
AGGGAGGAGCTACCTCAGTTGGGCGACGATGGCAGCAGGCGTGGGACGGCAGCGGGCGCA
GACGGCGGCATCGGTAGATTGTGGGCGGAGAGAGTGGGAGTGGAGAAGAAGAGTGATGAG
GGAAGAGTGTGAGCGGACGCAGGGAGAGGATAAGGTGGGATTAGCAGTAGTGTGTGTCCC
GGACATGCGCTAATGCTAGGAGCAATAGCACTAGTGCGGCCAAGAAAGAAGCGCTGCTGC
TAAATGGGTCCCATGCACCGTATGTAATATGGGCTGAAAAACCCGGTTAAACGCACCTTA
CTTTATTATTACGTGAAAAAATTAGAGAAACACACATTGCTTTATTAGTAGGTACATATA
TAAACATAGTATATTATTGGGGTTATAAATACGGGCTAGGCCCAAGTATACGAGTAGCCC
ATCAATGGCCCATAACTCGCATGAGATATGGCCCATCAAGCTATGGGCTAGGGGGCTCAC
CGGCGGCCAATTGATGACAAGGAGGGTGACGTGACACCGCACTAAGTCCTAACACTCGCA
TACCAGGCCAACCGATTGTCGACCGTCAGCACTTGGCCGGAGGCGATGGGTACCATCGGG
TAGACAATTAGTCGCCGACTACCTAGGATGCCTCTCAGCCGCGACGTCATAATGACGACC
GTTACCCAATGACGGTATAATCTAGTTAGATACGACATTTACCAGTAGTGAATGCCATGA
AACAGTTGGCCACACCTGATTCCATGAAGAGCACCAATACTTCACATTATGTAACCCTAT
CTGGAGCACTCTAAGTCAGGAGGGAAGCCATGGGCAATAGGTTGAACAAACTCACATTGT
ACCCTACGCCAAGAGCAAAGAGCACCACAGGAGTAGGGTATTACCTCCACCACAGAGGGC
TCAGACCTGTATAATTCCTTGAGCATACTCCCATTTGCACCATTCCCTAGATACAATTGC
CTCTACGTTCATACCCTCCTAGGATTGTCAGTATTATATCTACGACAATTGGCGCCCACC
TTGGTGACGGTATGGTGCATTTGGCTTCATCATCAGTTCCGGTTGGCAACATTCGCATCG
GGGCTCTCGAGTTCCTGATCGATGGGTCGGCGTGGCATCATGCTACCCCGTTGGACAGTG
TTGACGTGCCAGCTCGTGGGCGCATACATTACAAAGCCACTGATACGTCTCCAATGTATC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTGCTATTTTATATCATTTTTGGGACAAACCTATTAACTCAGTGCCATGTGCCAGTTT
CTGTTTTTTCCGTNNNNTTGACCTTTTCAGATAAGAATATTAAA