Contig Data
morexGenes
Links



Map Locations of contig_8090 (6914 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_8090

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_78554 1 1576 bp MLOC_78554.1 Available Available None
MLOC_78555 1 836 bp MLOC_78555.1 Available Available None
MLOC_78556 3 1184 bp MLOC_78556.3 Available Available LOC_Os06g51220.4, FRAME:-3, EVALUE:8e-35, 13106.m05521 protein HMG1/2, putative, expressed





CDS Structure of MLOC_78554






CDS Structure of MLOC_78555






CDS Structure of MLOC_78556






Contig Sequence (6914 bp)

>contig_8090 6914 assembly3_WGSMorex_rbca.fasta
TAGTCTCGTAAATCATGATTAGCAATTCCAAAATGAAAACCTGGCAAATCAGAATTTTAG
AGGGGGAAAAAAAGAAAAACCTTATAAAAGGTGAAGCCCCCGGTGAGGATCGAACTCACG
ACCTTTCCCTTACGAAGGGAACGCACTACCACTATGCTACGGAGGCGGGTGATGCTATTT
ACTCCTCTGACACGCTCTTAATTTAATATCCCGATTAACCCCACCACCGCTCCACCCGGT
CACTGACACCATAACCGCAGCGATTCGGAATTTGAAACCACGGGACAGATCCAAGTAGTA
GCACTAGTCATCAGCGACAAGAAAAAAATCAAAAGGCCGTCCTTCCCCGCAGGCAGGCAG
GGTCGTAAATGCGGCCGGGCAGACATGTCGGCCCGGTCCCAGACTCAGAGACCGAGCGAG
CATTCATGGATGCCTGGAGCAGCAGACAGACATACGGGCAGCTGCTGCAAACACAACGGC
TCCTCCTCCATTCATTCATTCATTCCAATCCCCAGCATACCACAAATATCTTTCCTGACG
ACGGGCCGCACTCCGCCACCATTGTTTTCAACGCGAGAGCTTTGGCCCATGATGGATGGA
TGCATGGCATCTCCCCTTTGGCGACGCAACACGGCCAGGCCTGGAGAATTCGCGACCACG
AATCTCTCTCTGCAACTTGAAGAGAGAAAAATGTGGTCGATTCCACTGCTCCACTGGATG
TACCAATGATTGATTGGCTACGAAAGGGAAGGGATGCAAAGAAGCAAGAGCGACAGAAAA
TGCAAAGAGTGGTCATCTCCTCGACGACATGCAAACAAACAGCAATCTCCTGATGAGCTT
GACCTTGGAATGCAGAATCACAGCGCAAGTAAGTTTTTGCAAAGAATCTGCGGTCCGGTC
AATGATTGGTTGGCCACAACATATAGTGCTACAAAGAGGGGGGGTGATATATTGGACTGT
TCCATCCACCGTCAATCAAAGAGGAAGATTTCGGTATAATTGGTACAACTACCTGCAAAC
ATGGGTAGGCAAGGTCCAATCCAGGCAGCACAAGAACTGGGGATAACAAAGCTCGTAATT
TCAAGACCACAGCTACAAATCTGACAAACAAGTTGGACAAAGTGGCAAGCATTTTTCCAA
CCAGGCACAGCACGGCAGCGATGCCACCTGCACTTGTAAGCCCGCTTCATGAAAAGACAG
CATCGATCAAAGAACAAACCAAGCGAGCATAACAAGGAACAAACCATACACGCACAGCTC
GTGCACAAGGGCAACAATCACATAACAAACCAAGCATAAAACATAGACGCACAACAAGAA
CAGGACAACAACAGCTTAATCTAACATTACCCAAACTGATATTATCACAATGTTAGCCGA
TGACAATGGACGGAAAGAGTGACCATCTAGGTAGGTACAGGCAGGGGCACACCAGCGGCG
GAGGACATACACCCTAACACCGCAAGGAGCACCCCGCCGGCGGGGGCGCCAACAGGGAGC
GCTATCCGTTATAGCAGGACGGATGGACGGACGACATGAAAAAGGTAAAACAACATGACG
GTGTGAAGTGAAACTTGGGATAATTCTAGTGGAGATGGATAGGCTCCTTATGACAACCAC
CACCCACAGCTCAGGGGCCTCGCGCAGCAGCTCCCGCCTTGTCCGCCGGAGCAAAGATGC
TTCTTCTTTACTCGTCGTCATCCTCGTCCTGCAACGAGCAGCAGCATAAGCTTATTATGC
TCATGTTCAGAACATATACTACAACAGTTCTTAACAGGTGCTTGTTATGCCTGAGATTCA
AGACCTTCCTAACTAATACTATTATACTTCTTTTTATCGATCCAATTTTTTGACCACCTC
TACATGATAGAGCTCAACAGAAACCAGTCCAGCCACACCTCATTACGATCTAAACATACA
ATCTACAGCTAAGGAATAATGCAGCATTCTAGTTATCAATAAGCATGCCTGGCAAGTTGG
ATACAAGAGACAGTATACAGTACACAGGATGCGGTGTGTTATACCTCATCGCTACCCTCA
TCGTCATCGTCGTCATTGATCTCCGACTTGGACTTGTCGGATTCCTCCTCATCTTCCTCC
TCTACCTCCTTGGCAGCGGCCTTCTTTGGGGCAGCAGCAGTGCTCTAAACAAACAAATCA
CGGTCCAAAGATGAGCACTATAGAACGTAGAACAGAAACAACAGCAAGGTTAAACAGCTG
GGGTCTGCATGTCGGTACCTCGCCCTTGTTGTAGGCAGCAATGGCCTTGTTGTACTCGCC
CTTGAGCTTGTTGGCCTTGGCAACAAAGGGGGCCTTTTCCTGCAAAGCAAATCGAGATAA
CTCGCATGTCAGCATACGCATCCACAAAAAAAGCAAGGTAACAGACAAACCTAGCAAGCT
AGGGTTAAGCAGGAAGGTCCTGAAGGAGAAGGAAGGAACGATGGCTTACGGATTCGCTCA
AGCTCTTCCACCTCTCACCGGCCGCTTTGCCGACCTGAATAAAAGTTTTACCGCGGAAGC
AACTGGTCAGTTCCCAGATCATGACCCAATCTACAGGGCCTGGCAGATTAATTTGTACAT
TCGTGGTGGTGGTAGAGAAAGCAAAGCAAATCAGTAGTGTGGGAGGAACTTACGGCGGCG
ACGGACTTGTTCTTGGGGTTCTTCTGCTTGAACTCCTCGCGGAACTCGCCCCTGATAGAT
GGTACCAACCAACAAGCGGAAGCAGGGTCAGGTTTAGAACAACGGCCGCCCGGAAATCAC
GGGCAGAAAAAAAAGAGAATCTGGTAACAGGAAGGATGGTGGATCCGAGGACGTACATGA
AGACGAAGAAGGCGCTGGGCGCCCTCTTGGGCTTGTTGGGGTCCTTGCCTGCCTTTCCCT
TCTTCCCCTTGGCGGCCGGCTTCTCCGCCCCCTTGCTCTTCACCGCCAACCTACACACGG
CCAACAGATCAGAGAGGCCGAACCCATGAAAAAAACAGATCTGGTTACTCGAATCAAATC
GATGTGGCCAACTTACTTGGTGTCGGCCTTGGCGGCGCCCTTGGATTTGGCCCCCTTCAT
GGCTGGTTTCCTGCGGCGAAAACGCGAAATCCGGTCAGATCCGCTCGAGGGCCGGCGAAA
GCCGGTGGGAATCGGGCGGATCGAGGCGAATCGGGGGAGGCTCACCTGGGGTTGGGGTGG
GGAGGGCGCTCCTGGTCTGGTTTGGGGAAAGGAAGGAAGGAAGGGGACGGAGACGGAGAC
AAGGGAGGGCTAACGCTGCGTTGGGACGAGGGGATAAGAAGCGCTCGGCCTCGGCACGCG
CCCGAGGGCGTATCCGCGATTCCGCCCCATCTCCGAGGGCCCGCCCACAACCCCCAATTC
GAATTTTCGGACCCATCCACCGCCCTTCTCACCCCACGATTCCCACCCAGCGATGACACG
CGGGGCCCGATGCGTCGTGGGGCCGGGCTGTCATGTTGCGTAGCACAAGGGGTAGGGGGG
CGGGCCGCCGCGCAGTGCAATCCGCGAGGGGCGCAAACGCGATTGTGGCGGGCGCGGGGG
GGGGCGGGGGAAAGAAGCGCGCGCGCAGGGGCTTGGGCGGGATTTTGGAAATTTGGGGCC
GCGCCGATATTTCTGCATGTGCCGCGCGCGTTCGGGGCCTGCGGGCCCGGGCCGTCAGCC
GGGTGGGGCGGCACGTCAGCGATCCGCGAGGTGCGCCGCGATTGGGCGGATCGCTGCTGT
TCGGAGCAACGGAGGCGGCTGTGCTTTCACCCTGTGCTTCCTATGGCGCACGGCGCGGCC
TCGCTCCGGCCGCTGGGGGCGCCGATCTCAGCGATTCGAAACGCCGCCTTTCGCCGCGCG
ACGAGTGCTGCCGATCCATGCGTGCTTTCGCTAGGGTTTCCAACGCATTTCGAGTTTCTT
GTGGTTTTGTGCCTCGCCTTGGTCACCGTGACGTCACCTGGATCAGCGTGATCTTGTTGG
GATATCACGTTTTTACTGCGGGTTCTTACTGTGGGTTTTTTGCTGGGGGGTTTACATTTA
CTTGCACGGGTGATTTCTTGTGGCCTGGCCTTCCGCCTCATCCATGGGTGTCTAGATTGC
AAGACATGAATAACTCACCATTTGTTTGGAAGAAGAAAAAAACATGAATACTCGTGATCA
ACTAGTTTCGATCATTTTTTGAGACCCTGATTGCTGGAGATAGATCGTCTATAAGTTACT
CCCGATGAACCGTCGGAGGGAGCAGCTTCCAGCCTTCATTTTTGATCGTTTCCTCGGCGA
AATTGACTCAAGAGGTGCAGTTGAATTTTTTTATTTAACAAACGACATTGATAAAAGCAT
TTTCCTATAAAGAAACAGAGACACCCTAAATTTTGAAATACCATGCTCTCGATTTATGAA
ATAATATCGTCGTCTAATATCATACATGGATATTAAAATGTAGAGTGAATTATACTTTTT
ACCCCCTGTAGTAGTTGCACATTTGTGACACATACTACCCTCATTTAGTGGAACATCAAT
CAAAATGCCACCGAAGTATTTCAGAGACTTTTAACATAATTTTACATCATTTCTTCATTT
TTTTATGTTAGATAGAATCGACATGTTGCCTCAATGATTCGTAAAATAAAAAATGAAAAA
GGAAGGGCATCATTGACGATCATGCCCAGACTTCTATTGTTCATCTGATCAATGCCATGC
CGCCATCCAGATATTTTTGGATCTTGGACGCCACGTCACACCTTGTCTAATGGACACGCA
TTAGAAAACAAGGATTCAAAGCTTCTAAAAGGAGTCTTCTAGACGATTTTTCACTTGACG
GGGAAATTAGTGTCACAAATGTGTGTGTGTCTATATATATATATATATATATATATATAG
GGGGTAGAACTTGGAATTCACTACAAAATAATAATAATGCCATGGTCAACAAAGAAGAAG
AAAATGCCATGTTAAATAATGTCATCTCTTAATAATAAAAATGTCATATATTCATAAATG
AAAAATAACATATCGTAATCGTAATAAAATGTCATGTATTAGTAATAGAAATGACATATC
TTTAATGATAAAAATGTCATATAATATAATAATAATAATAATAATAATAGTGGAATCTCA
TAATAATATCGCATCTGAATAATAAAATATCATGTACAAAAGCAAACTTGACTTGTGGAA
CAAAAACGAAAGCAAGCGAAAATGTTTAAATTGCCACGTGACATCGCTAAAAAATTATAA
ATCATCATTTAATTATTTTATACGAAATTGACATGAACACGTCGCTATCCAGTGCGATGG
TTGTACTGATTTGAATGATAACGCGCTCGCTAACTTTATCTTATAGCAAACCTAGCCGCA
GCTACAGTCACGCCATGCACAAACATTCACACAGAAGCAACCAACAACACCATGGTCAAG
GTCATGTTGGTGCTTTTTCTAATCTTTCCTCTCCTCTCCCAGTCCAAGGCCACCACTACC
TACAAGGAGATTACATTCGACCTACAGAACCAGAGTTTCGTCGAGTTGGTCCAAGCCCTG
GTGCTGCATCAGCCACCTCCGCCGAGGGCGATTGCGGCGGACACTGTGCTGAAAGACAGC
TTGGTATCCTTGATGCTAGCTCTCACCGACGGGCTTAAGGCTCACCGCAACCTCCTGAGC
TTCGACGAATGCGGCCAAGCCATTCAGAGATTGTCAGCGCATCGTCAGCCACCTCCGGCG
AGGTTGATCATGGGCGGCTTCATGAACAAGAACCAGAGTTTCGTGAGGCCGCGTCAGCCA
CCTTCGGCAAGGTTGATCATGGTCGGCTTCATGAACAAGAACCAGAGTTTCGTTAGGCTG
CGTCAGCAAACCTTCGCCGACATCGATTGACCGGGACGCTACGGAAGCAGATGCGGTGAA
GGAGAGCTTGGTCTCCTTGATGCTATCTCTCACTGACAGCTTCAAGGCTCGCCGTAGTCT
CCACAACTACGGCGATGAGGAACCTGTGTCGTCTTCAAAGGAAATTGTGGCTTAACATCT
AGCTTTGGCTACATATATAACGTTTATAACTATCCTAATTAAAGATCCTCTAATCTGTCT
GGGGAGCAATTAAGAACTATTATGATGTAATCTTTGTGTCTTGTGCACGCGCCATCAGTC
TAATATATGCTTATATATTGTGTTATTATATCAATCCTTAATACACATGTATTTGTGTTT
GAAAGAAACACGTAACAATTGGGAAAGCCCATGATTCTTTAAACATAAAAACACAATCAT
TANNGAGGCAATAATCATGTCATCACACCAGAACAGAAAGTAAAAAAGCAAAAAAATAAG
ATAACTATTGGGTTACATCCCAACAAGCGTTATTGTTTTATGCCCTTAGNNNGGCATAAT
GCATATGATCAAGTGTTGACATCTTTGACACTCAATCCATAAGTAGCCCTCATGNNNNNT
TCATAAGGTGGTTTGATTCTCTTTTTAGGGAAGTATTCCATCCCTTTCTTTAATGGAATT
TGGAACCATATGTTGCCCTCTTTCATATCAATAATTGCACCTATAGTTTGTAGGGAAGTC
TTCCAAATATTATTGGACAAGTAAGGTTGCAATCAATATCAAGCACAATGAAATCTACAT
GCACATAAGTTTTATTTGCAATAATGAGAACATCAATAATTCTACTTAAGGGTTTCTTAG
TGGTAGAATCCGCAAGATGCAAGTCTAGGGAACACTCTTGAATACCAGCACAAAAGTAAC
ACAAAGCGAATCACATGGAGATTTGGGTATTTTTGAAACACTAGCACCAAAGTCACACAA
AGCGTTGCATTTATATTTATTTTTCTTTATTTTGGTAGTAGGTTCCCACTCATCATGCAA
TTTTCTAGGAATAGAAAGTTCAAGTTCAAGTTTCACATCAAATGCTTTTATCATTGATGT
CTACTACGCAACCT