Contig Data
morexGenes
Links



Map Locations of contig_80709 (3433 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_80709

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_78528 2 1256 bp MLOC_78528.2 Available Available LOC_Os01g52240.1, FRAME:-1, EVALUE:2e-174, 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed





CDS Structure of MLOC_78528






Contig Sequence (3433 bp)

>contig_80709 3433 assembly3_WGSMorex_rbca.fasta
TCGCCGGGCGGTGTCTCCGCCACTGTCTAAATTTGAATATGTTTCTCTGTGGAAAACTCT
AAAGCGAAGAAAAAATGTGTAAGAAATATTTTGTTAGTGCTTTCTAGTTATATATTTAAG
TATAAGCAAATAGAGAATTCTAGATTATATAAGCTGTTTATTAGGAGTATTCCAACTTTT
GGTTATGCATGTTGATTCTTCAGGTAAATAATTTACATAAACTTTTTGCGCCATATGTTC
AACCATCTACGGAAGACATGTTTAACAAAATGCGAAATGATCACACCAAATGTCTATATC
GATGTGGAGCGTGAGATGGAAGGCGGGCAAATCTTGTAATGCTTTTGCACAAAATCCTTG
TAATTTACAATATGATAGTACAAATTAGACTGCACGACGGCACACTTCACCGCGAGCATA
GTCTCTAGGACAGCTTATTTCCCAGGAACAAAGTTGGTGGCGAATGCCCAAGCATTGTTG
TTGACAGGGTCGGAGAGGTGGTCGGCGAGGTTCTCAAGTGGACCCTTGCCAGTGACAATG
GCTTGCACAAAGAAACCAAACATGGAGAACATGGCGAGGCGACCGTTCTTGATCTCCTTA
ACCTTGAGCTCAGCAAATGCCTCGGGGTCGTCGGCAAGACCAAGCGGGTCGAAGCTGCCG
CCTGGGTAGAGCGGGTCAACAATCTCACCAAGTGGTCCTCCGGCAATGCGGTAACCCTCG
ACGGCGCCCATGAGCACGACCTGACACGCCCAGATGGCAAGGATGCTTTGCGCGTGCACG
AGGCTTGGGTTGCCAAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGATCCAGCCTTG
AACCAAACAGTCTCACCAAACTTAACACCGTTGCGGGCAAGCAGCTCGGGGAAGACACAA
CCGAGTGCGCCAAGCATAGCCCACCGACAATGAATCACCTCCAGCTCACGGTTCTTGGCG
AAGGTCTCAGGGTCAGCTGATAACCCGGCAGTGTCCCAGCCGTAGTCACCAGGGAACTCC
CCGGTGAGGTAGCTCGGGGGCTCGCCAGAAAGCGGACCGAGGTAGAGCACACGGTCAGAG
CCGTACCATGGGCTGTCGGAGGCAACCTGCTTGGCCTTTGCCGCCGTCTTGCGCATGGTG
ACACGTGCCTCGCCAAAAAGAGACGATGATGGCAAGTTCTTCACTGCCTTGCCAGCAAAG
GCTGGGGAAGAGAGTGACATGGTCGTTGCGGCCATTCTGATCAATTGAGGTTCTGTGTGT
TCAAGAGTGAGGAATGTGTGTGGAGATGGCTTGAGAAGATTGGAGCAAGAGCCTTCTTAA
GGAAGTGGACGCAGAGAGGGAATCGACCGCTGTAGGCTGAGAGGAGAGAGGTGTATAGCC
AGAAATCTATATCTTGGATGTCATTGGTGTAGAGTGTGAGCCACAAGATCAGATATACTT
GTGGATATGGCTAGCTGGGAATCTCCTTAGAGAACAGTGATTGGATTACACGATGTTATG
CACGTGAGCATGCCATGCATGCATTACCCCCCAAAAGGACAATATAGGATATCCATTCTT
GCTGTCAAGGAAAACCACAGCAATTGTTGAGCAAATTTCTATTTAACTGACTGTACATTT
TACTGGCATCGTTGGGCATACCGTTAGCCCTCTGATCTTATTATCTGAAATAAAATTGGA
GACATGCTCATGCATGTACGTCCAGTGGCGGAGGCAGAATTTTTATAGAGCCTGGGCAAG
TTGAGCCTAAGTGTATAATACAAAAATAAAAAAAACTGGTATTCGGATATGGAACATATA
ATATAGCATCAAACTTCTGAATAACAAATTCACAAATTGATAAATTGTAATTTTAAAATT
AAATCATAAACACAATAATCCTTATAAAATAAAATTTTAAAATGAACTAATATATAGAAT
ATCTATGTTCCTTAGACCAAATAAAGTTGAGACTTAACAACAAAAGATACATAATCAGGC
TTGCATAGAGGCCATCTTGCTACGATGCCAACAAAAGTAAAGCTATCTATACCGGTGAAT
TGATTGTGCAACTTGTTCAACCACGATCAAAAGCATCCATTTGTTTATTTTTGCAAAAAG
AAAAGACATAAAACAAACCTTGCATAGAGGCAGGCTCACCATTTTGCCAAAGACCTAGAA
GGCACTACAAGATTAAAAATAATTTTAGTTCTGTGATGTGAATATTTTGAAAGCTTACAA
GAATAGAGATGGTCAGATGGAACATAATGACAGTGCACTAAAGAAAATTACGAGGCAAAT
GCCCTTTCCGAGACCTTATTGTGGTAAACGTTTGAATAATATCCTTATCATCAACTCACT
TGAATAACTCCCACTAGTTAGGTGTAACATATCATCAAGTCATTGAAGTATTCATTACTG
ATCTCGCTAGACAGTTTGCTCCCTGTTTAAATAAGATCACAATTTGCACCCTATTAACGC
TCGACAGAAAGATAGAAGTGTGCATTTTCATAAAACTTTAGGAAATGACAAATCTAAAAT
ACAACCACGTAAACTTAATAAAATGAGTTGATTCGCTTGACAGAACAAGGTCTATAGGAT
CAGGAAAACCACCTTTATCGACAAAATCCGATCCATATAACTCTAAATTAGATACTTGGT
TACACCTAAATTAGAATCCAGCCCTGCCGGCCCCTAGTACAGTTTTTGATTGGAAAGACA
ATTCAACCAAGGGATTAGCTAACACGCGTGCAAATTCATAAAGATATCATTAGTTCTGAA
CAAAAAACGTACATATATTACAGAGATATTGTTCTGAAGATCATAGACAAAAGGAAAAAT
ACTAATGGAGCCAGTCTGAATAGATATGCAGATGGCACCTAAGTACGAAGCAAGTCCGTG
ATAATTTGGCAGATGATCTCAAGGAAATATTGCATGAATACTTGGCCCGGACAGATTATT
AAGAGATGAGGGGTCCCTATTCCCTAACCTTGATTTCGATGGAGGATTCTTACTGAAGGA
GCTGCAGCATCCGATTGAGAGAAAGGAGGGGCTGAAGCCTTGAGGGACGAGTAGATTGCT
TGGGCACTTCGCCTCCGCTCCCCGCCGGCAATGCGTATGGCTATCTAGGGTTCTAGCCGC
GAGTCCCTGCGCTCGCCGCCTGTGAGAAACAAAGAGATAGGGATATTGAGCGGTCCATCC
GTCGATTGTACGTATGCCTTCACCGCTGAACTCGTGTTACGGAAGTTGTTTCGGCCTGGA
CTGCAGACTAGAGTTCGGTTGGGCTGTGAGCCTGTGAACCTGAGAAACGAAGGCCCAAAT
TATTTTTTGTCCGGGTAAAACAAGATGCCGAGAACAGGGTTTAGCCCTTTATTAATCCGT
GGATGGCTGTTGTATACGAGCCAGCGAGCCCGGGCAAGTGCCCAGGGTCGCCGGGCGGTG
TCTCCGCCACTGT