Contig Data
morexGenes
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Map Locations of contig_80665 (3635 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_80665

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_78516 10 2753 bp MLOC_78516.5 Available Available LOC_Os01g73150.1, FRAME:+2, EVALUE:2e-39, 13101.m07984 protein expressed protein
MLOC_78517 1 679 bp MLOC_78517.1 Available Available None





CDS Structure of MLOC_78516






CDS Structure of MLOC_78517






Contig Sequence (3635 bp)

>contig_80665 3635 assembly3_WGSMorex_rbca.fasta
GACTCCCCTCCCACCCCTCCCGCCGCCAGCCTTCCTTCCCCTCGCCCCTCACCAGATCGC
CGTTGTCTTCGCATGGAAGTTTCTGCACTCCACCTCGCTCGCGCCTCACCTGCAGCCTCC
CCTGCGTGCAGGCCCACAAGTGCCGCGCCGCCTGCTCCGGCAAGCGCCCCCGCACCGCCC
CCATCCCGCTCGCCCAGTTCGTCGACACCCAACTCCTCTCCGATGAGCAGATTCATCCCC
TGACCCCTTGTACAGTCCCCCGCTCCGTCCATACTCATTGTCCCCTGTTTTTTCTCCGCG
CGCGTGCAGATTACAACTTGCTGCAGGAGAAGACCCTGGTGAGGGAGTCGGCCCACAGGC
TGCTCGGCGACTTCGGCGGCAACTTCGGCCGGACTTCGAGGGACGCCCGGGCGCCAAGCT
GCCGCCGTCGCTCGTCTTCCTCCGCAAGGCCATGGAGCGCCGCAGCATCCGGCTCTTCTT
CCTCCCCCGCGACATGACCAGGAGGGCGCAGAACCGCTCACGGCACGACAACAGGTCTCC
TTTGATGACTCTTCATCCTTATTAGTGTCCATCTTTCGATTGATTTCTGTTAACAAGTGC
TATCTGAAACTGAAGACACCGGAAGTAATCATCTTCTTGTTGACATCAATGTGAATGTCT
CATGCAAGTTGCCAAGGCCGTACCCCCAAAATTTGGGCCCTAGTGATATATAAGAAAGTC
AATTAAACTTTTTAGCAACGATCATCTTCAGTAGCATAATGGATTAGGACGCAATGTCTA
GAACTGGAAGACATCTTAGAAAATTAGGACGCAAAGATTCAACAAAGAGCAACCAATTAA
CTAAAGAACAAGCCTTTTTGGCTAACAAAAACTAAAGAACAGAGGGGCCAGAGAATAGTC
GAAACAACCTTCGTCAGACTGGCTGATGCAGACCATGAAATGGCCATGCTTGGTGCTCCC
ATTCTGTGCCATGACCATGGAGAAAACAGCGAAGCAAGATTCCAATTGTTCAGATTTTCT
AAGGGGAGGATTGATTGTAAATTCAGTAGGAAAACCCACAATTTATATGTTGCAGCCGAG
CAAACCTGCAGTTTATTGCCATCTTGATGGACTCCACGTTTTCTTTTCTAATTAAACCAA
GTCAGTGTCTGTACATGTTTTCTTCTCTTGAGAAAACACACCCAAAAGGCATCATATATA
TATGATAATTATCAAGTAAAACAGTAGCCAATACAGTGGAAAGACAACTTGATACAAAAC
AACCAGCCAAAAATAAAATTGCATCGAATCACTTTTCTTGGGAAATTGGGTCGGAGGAGA
ATTGAGCAAGGATAAGAGGCATCCAAGAGTTAATTTCCAGCTATTTAGTTTGGAGAGATT
TGATTTGCCCCTGAGCTGAGGTGAGTCAAGGAAGAGAGACTGGAATTTGATGCGTTATGT
AGACTACCTTGAGAGTTATCCTGCGTGTGAATATGAGATAAAGAGGTGAGAGAGAGACAA
GAGTTGGCTATGGGCCGGGTTTTCTGGTTTGGTTCCATGGTTCGCTCAATTCTTTTTCTC
AAGTTAAGTAAGTTTTCTTTAGAATTTAGAGTGCATGATTGCTATGGTTCAAGTCATACT
TAATGTGATTATGATTCAGTTTGGTGATTGCTTAATTCCATTGTTTGGCGCTTTAGCTCA
CAACTGATAAGTTTCCATTCAAGTTTAACCTCTCCTTTTCTATTTAGGCAATAATACAAC
CACTGTTTGTCAGCACGTTTGCTACAACACCTTGAGAACCAGCACAATGTTTTATTTTGT
TGTAATAATTCGTGCAAGCATCCTATGTCTACCCTCCATCGTACAATCCAAAAATTATTT
ATACATTTGAGTGGACCTTACCAGCAGTATCACTCGCCCTCCTTACCTTTATCATATGCA
AAGAACTTTATGTGTAATATCTCTTTTCAGAAATGACTGCATATACTAGACAATCGAGTG
GAAGTTCAATTCGACAGATATTGGCCTAACTGACCACGAGTAAGTTCTCTTATGTATCAG
CATGGAATGTCTCCTCCTATTTTTCCTGTTTACTATCCTTGTTAGTTTAGTACCATTTTA
AGATGATAAGTACATATGTAAAAGCCGTTTAAAATTTCTGAAATAGTTGTTCTGCATTTT
ATGGAGATGATCTGCGTGTCATTTTGAAACTTATTATGTCATATATTTTCTGATTCTGCA
CTTACTTAGTACAACACTACCAAACATTTGGAAGCAGAGCTAAACATTCAAATATATGTT
GTGCTAGTTACTTTGAGCCACACATAGATATAAAATCTCGGTTAACAAGTGCTATCTGAA
ATTTAAGACAATGGAAGTAAATGGATGTTGTAGCAAAGTGAAATGCCCTCCATGTGTTTG
TATTGTCCCTTTGACCATGTATTCAGTAGTAATCATCTCCTTGTTGACATCAATGTGAAT
GTCTCATGCAATTTGCGACTGTACTGTTTGCCCCACATGACAAGATATGAGCCTGACCCA
TAGTAATATTATTTTTCTTCAGAAACTAGTACAGTTATCTTGCAGAATAGGAATGGAGAT
GTGTATCGGTCCTAGTTTATTTCTGCATGTTGTACTTCTTACTATGAGGTTAAATCATCT
TCTTGGCACATAGTTAAGGATCTAAGGACGAAAAAATATTTGTTTGTAACACAAGGAGTA
GACAATTTCTTAGCGTGCAACACTGCCACTGTATTATCTAGCGTTAATTTTTTAACTTTT
GAAAGCAACCTGTTGTTCTCTCCTCGGTTGACTGCATGAATAACATTATGTGATTATTCT
GCAGACCACATTTTTACCTCATGTGTCTTTTTATTTGAATAACATGATGATGGTTGTAAC
CTGTAGTGAAACTCATCCTAAAGTTGGAGATGTGCCTGGTTAATTTGCATAGATCATGAG
ATGGTGGTAAGCAATTCTCCACCTTTGTGGTTTTAATAGCATATCTTTCCAAATGATTGC
AAATTTTTTGAATTCTCCTGTGCCTCCATTTTCAAGGTTCTTTTTTGTTGGGTTGATTGT
GACATCTCATTTTGTACTATTTTTAATATAAATGACCTCTCAGTTTAGAATTGCCGTGTA
TACTATTCAACTAATGAAACAAGAGTTCGTGTGATGGGAGGTTGATGCACATTTCATTTT
ATATCCTTGCAAATCGTTAATATAAATGCCTAGGAACCCATTTTGATTCATATAGCCAGT
CAACAGTCCTTTTCTTATTACCACATAGCATTGCTACTACAGATTCTACTTCCCGTGGCA
CAATTGGAACTTTGCAACTTATGCTAATACATGTAGCAATTGAACTGACAGTAGCAATTA
ACAACCACTATTGAAGAAGGATGCAGGTAGGGACACATAACAAAGGAACTAATGCTAGCT
GCTGCGAACTCAACCCCGACAGTATTCTTGTGACAATATCTGAATTCCTTGGACAAAGAC
CAAATGTGTTAAGAGACTACCTTGTATAATTTGTCACACATATTAATTACAGTACTTATT
TTATTTTATGGGTACATGAGGCCACGATTAATGTTGGGTACTAGTTTACTAGTGGCGTAA
TTCTTATGTATTGATGGCAGCAAGAATACTTATGT