morexGenes - Barley RNA-seq Database

Contig contig_80252

Source Contig contig_80252

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_80252 (2584 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_80252

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_78440	1	273 bp	MLOC_78440.1	Available	Available	None

CDS Structure of MLOC_78440

Contig Sequence (2584 bp)

>contig_80252 2584 assembly3_WGSMorex_rbca.fasta
GGTGTGGCATGCCCCCCCTCTTGGCCTTGGCCTTGGTCTCGGCCTCGTTGAGGCGCCGCC
GCTAGTGGCGGCGGCGGCGGCCTGGAAGCTTGAGAGGTAGGTGCTTGCCATGTGCGCCGT
GGGACTGGATAGCGCGGGCGGCAGATGGAAGATGACTGGTGTGAGAAAGAGCTCTGAAAT
TATTATCTTTTCCTTTTTGTGGAACTGTGGTGGAATTTCCTTTCATTATATTTTGTGTTT
TTGGTTGAATTGTGTTGGACGCGCTGGAGAGGGCCATGCCAAATTGTGCTGATGTGCTCA
GAGCATCCCGTAAAAGGGTCGAATCTGTAAAATAATCGTCAAAATACAGATGGTGACAAG
AAACGCTGCTAGACCAGATCCCGTAACCGCGTTCGACCCGTAAAAAGTTTTGCGAGGCAT
GGCAAAATGCCCACCCACCCCGCGAAAATGCAGGTTTTCCCTCCCGATCCGTCGATGCAT
GCATATTTTTAGAAGCGGTTGGTTGGTGGGACATTTCACATGCGCTTTTCCCCCCACCCA
CCACCGTCGGGCACCGTCTTTGATTCCGGCCACACCAGCCACCGGGATCACGGCAGTGGG
CCGCCGCAGGCCCTAGATCGACCTCCCACGCCCTCGTGCCTCAGCTTGCCAGAAATCTAC
AAATCGGCGACTGTTTTGTCGCGATCATCGGATCTGCCTATTTCGGCCACCGGCAGCTGT
GCCACAGCCATGGATTGGTCGGGGAGCACCCGCACAGCCCTGACAAACCTCCAGCGCCGC
ATGCAGGTATTGGTTCATCCTTAAGTCGTCGGCGTAGGTTTGCCGGCAAGGACTCTTCCG
GTCGTCGCCCGGGCCCGATGGTCGCTCAGCGGCTCGCCGGCTTGCCGTGCCACTCATACA
GTGTGACGATTGCCTATAAACACCGTTGCAGCTCACATCCAACACACGACAACACCTCAG
ATGTGTATTCTTCAAATGCAAAAACGGCAGGGTATGATTTTCTTCCTCTACGACTTTGTC
AACTTATTTGGGTAAATTAGAGTAGCTTATTGAGGTCTTCATCTATGTAGGAAGGTGGAT
GCTCATTTTGGTATTGGAAAGAAGAGTACATCGATTTATTGATAGAAAGAAACTTAATAG
ATGTTTGTGCACTCCTTAGTATAGTTGAATCTAACGATGCAGCTGCATGTGCAATTACAA
AAAAATTAGAGGGGAAGCAACGTATATTTTTTAGAATTGAAGCCAAAGAATGAAGAATGC
AAGTTGAAGGACCCCAGATCAACAATGAGAGCATGGATAAGATGTTGATCCAACTAGTGG
GAGCAGTTATGAAAGTTGGATATCTTCTAAAATGTCTGATTGTGGTTTTTGTTTTCTTTG
GTCTTGCTGTTTTGGCAAAGATTTGATGAATTATGATGTATCCAATGCATTTGAAGAAAA
TAAAGAAGCAACTAAAATATGTTTTCATGCCTGAATAAGTAATGGGAATAAAACGCTTTG
CGGGCTGGCATGGGCAGCGACCGAGCAGACCCCGCAAAAGCGTTTTTCTGCGACCTGCAA
ACGACTTTTGCGGGGCAGCTCTATACGGGTCTACTAGAGATGCTCCTAGAGCATCTCAAG
CCGCGCCCCCAACAAGCCCCCTAGGGCGTGTTTTCTTTCCACTGGCACCGAAAAATCGCC
CAGTCGCACCTCGAGGACGCCGATTTTTGCCAGTTGGGCCCATTTTTAGGCCTAGCTATC
ACAAGCCGAACCTAGTGCGCCAACGAGCGCTTGGAGGCTCCAGCGAAAGAGAAAACGGCG
TGTGGGCCGCCACTATTAGGCGGAAAACAGTTTTCCACCTCCAAATTGGCCCCTCGCGCG
CACTACACCTTTTGCCGCCGTACCGACCCCGGCTTCGCCCACCTACCCACCGCTGCTAGA
AAGGCCATCTCCCTGACGAGAAAGGGAGGGTTCGCCGCGGCTTCGCCCTGCTTTCGGGGC
AATTTTTTCCGGCGCTCCGACCACGCCCGCGAGGCGTTCGTCGATTTGTCTCGGTGATGG
ACTCCGACGATGAGGAGGCATTCACGGCGCTGGTTTAGGAGGAAGCCGATGTCGAGGCCC
AAGACGAAGAGCACCTCATGGTCCTCGCCGCTCTGGCCAGCCTGTTCGCGGGCAACGCAA
AGCCACAGCGAGGTGGCTCGGTGCCGGCCCGGCTGAAGGCAAAGCAGAGGCATCGAATTG
AAGGCTATTGGTTGCTCTACACCCTGCGCGAGGATGCAAGAACTCCTACTTTGCCAAGTG
TCAAGAAGCTTGCAGGAAGGATGTTGACTGGGCATTTGGAGTGCTCCAATCTCGATTTGC
TGTTGTCCGGTACCCCGCTCAGACCTGGTCGAAAGATCAAATGTGAGAAGTCATCACTGG
TTGTGTCATCTTGCACAACATGATCATTGAGAGCGAGCATGAAGAGCCAGTGTTTGGCAC
TGAACCATATTACAAGCAGGGTCCTCTTGCCCAAGTTGATCACTGACTACGGCTCGCAGA
CGCGTTGGTTTCCCTCCAAGCTTAAAGGGGGATGTAGCACAACGACGGGAAGGATTTCCC
TCAG