morexGenes - Barley RNA-seq Database

Contig contig_80215
Source Contig contig_80215
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_80215 (9591 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_80215

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_78431	4	3409 bp	MLOC_78431.2	Available	Available	LOC_Os07g42750.1, FRAME:-2, EVALUE:1e-117, 13107.m04478 protein DDT domain containing protein, putative, expressed
MLOC_78430	1	292 bp	MLOC_78430.1	Available	Available	None
MLOC_78432	1	851 bp	MLOC_78432.1	Available	Available	None
MLOC_78429	1	135 bp	None	Available	Available	None
CDS Structure of MLOC_78431

CDS Structure of MLOC_78430

CDS Structure of MLOC_78432

CDS Structure of MLOC_78429

Contig Sequence (9591 bp)

>contig_80215 9591 assembly3_WGSMorex_rbca.fasta
ACTATGCTATGATTATGTAGATTTGTGTTTATGTTGACTATGGCACTATTTTCAGTTTAT
TTTTAGATGTTTGTGATGATGTTGTGCTTGTTTTCATTGAAAAATGTCATGTTTTGGCCA
CAGTCGTTTTGCATCCGTGCCCTATATAGGGCAGCTGCTCGGGCGGGTGCTGCCCTATCT
TGGGCTGCTGGTAAAACGGCTGCTGTTTTGCTGCCCTATATCTCGATTTTGCCTGCCCTA
TAATTGAAAAGAGGCTGCCCTATTTAGGGCAGCTGTTAGAGATGCTCTAAGGAAACCATT
AAGGAACAGAATTTTGACATCCATCTACCAGATTTCATAATGGAAAAATGCAAAACTGCT
AACATGTCCTAACAAAATTTAGTAGCACTACGGGTGAGAAAGTATCATCATAGTCAACCC
CTTGAACTTTCCGAAAACCTTTTGCGACAAGTCGAGCTTTATAGACGGTGGCATTGCCAT
CAGCGTCCATCTTTTTCTTGATGATCCATTTGTTCTCAATTGCCCTACGACTATGGGGGT
AAGTCCTCCAAAGTCCACACTTGGTTTTCGTACATGGATCATATCTCGGATTTCATGGTG
TCTAGCCATTTGTCACAAATCGGTCAATCACCGCTTCCTCATAGTTCGTAGGCTAACCTT
GTCTAACAACATGACTTTCAAGATAGGATTACCATAACAACATGACTTTCAAGATAGGAT
TACCAACCACTCAGGGTCAGTACATGTCCTTGTCGACCTACGAAGTTTTGTAGGAGCTTG
ATCCGAAGTTTGATCATCATCATTAACTTCAGCTCCAGTTGCTTTAGGCACCACAAGAAC
ATCTTTATGTGCCGCACTACTCACCAATTCGAGAGAAGGTTTGATAACCTCATTAAGTTC
TACCTTCCTCCCACTCACTTTTTCAAGAAAAACTCCTTTCCTAGAAATGATCCATTCTTG
GCAACAAATATTTTACCTTCGGGTGTGTGATAGAAGATATACCCAATTATCTCTTTAAGG
TATCGTGTGAAGATGCACTTCTCCGCTTTGGATTCGAGCTTGTCACGTTGAAGCCTCTTG
ACATAAGCGTCACATCACCAAACTTGGATTTCTTGCCAAACCATAATTTCATCTTAACGG
AATTACATAGTGCCTTACTTAAAGTGAATGCAACTACCTCTAATGTATAACCCCAAAACA
ATAGCGGAAAATCGATAAGAGACATCATAGAACTAACCATATCTAATAGAGTATGATTAC
GAATTTCAGACACACCATTATGCTGTGGTGTTCTAGGTAGCGTGAGTTGTCAAACTCATA
ACCCAGATATTCACCACAACGATCATATAGTAAAGATTTTATTTCTTATCACGGTGATTT
TCTACTTCAATATAAAACTCCTTGAACTTTTCAAATGTTTCAAACTTATGTTACATTAAG
TAAATACACCCATATCTATTTAAGTCATCTATAAATGTGAGAAAATAACGACATCCATCG
TGTGCTTCAATGCCCGACATGCTCTCCTGGAATGACAACCAGAAGACCTACCTACCCAAC
CCAGCAAACTAGGAAACAGATCTATATAGCCCTTCTATTCCATGAAAATAGGTATTATGT
TATCCAGCCAGGCGCCTCCCTGACCACTTCAAATACAAAAAGGAAATTACAAAGCCGGAG
CAATGATTATTAATAAAGAATTTATTAGTGTCTACATTGTTGTACACACCCCATCCTAAG
GAGATGTCGTGGCTTCTGCAGAGTTAAGATCATAACCACGAAGGTGAAGGCATCAAGATC
AAGGCAGAAAACAAGGGCATCATGGCCGTCTCGCCTCGAGAAAAAGCACGGACATCAATC
CAAAGATTGAAACTGATGCAAAAAAGAGTAGTGGCAGCTGGGTGCTTTGCTGGAGCACCA
TACAAAATAATCCATCTAGTTCCTTCCTAGCTATCTCACGCATGCCTGAGCTCCTGTATC
GTGTAATATAGAAAATATTATTGGAGGAATAACCCAACATTGAAAAAAAATGTTGCCATC
AATATTCTTAAGGAGTACTCCCTCCATTCCTAAATATTTGTCTTTCTAAAGATTTAACTA
CGCACTACATACGGAGCAAAATGAGTGAACTTACACTCTAAATTATGTCTACATACATCC
ATATGTAGTCCGTAGTGAAATCTCTAAAAAGACAGATATGTAGGAATGGAGGGATTAGCT
AGCATGAATAATATAGCCACACACGACGATGACATACAGCCACAAACGGCATATATATAT
ATCAGATAAAGGTTTCCCTAATACTGTTTCTATAGTACTAGTACGGTACTGTTGAATAAT
ACTCCCTCCGTCCGGAAATACTTGTCCTAGAAATGAATATAATAAATGTATCTATAACTA
AAATAAGTCCAGATACATTCATCTCTAGGACATGTATTTTCGGACGGAGGGAGTACTGAC
ATTAAATTGTTTGCTGAGCTCATGTGATCATTTATTTCCAAGCTGATGTTCTGGTAATAA
TTTCCAACGAAGGTGATTCATTGGACCAAAGGAATTGATCGTAGTAAATCAAGACAAATC
GCAAATATAAGAAGGTGATTCATTGGAACAAAGGAATTGATCGTAGTAAATCAAGACAAA
TCGCAAATATAAGAAGCATATTAAACATTAATCCTTCCATTCCCAAAAGTAAGGCGTATT
TTGTTTCGTTAAGACATGCATTTCACCAATAATTGCTCCATAAATACAAAGTTAAAAGAC
ATGAAATTTGTGTCACTATTCGTATTTAAAAGTACTTTGTTATGATAGTGATTTTGTATC
ACATAAATCAAATATTATAAGAGTAATTGTTGGTCAAAGTCTTGTCTTAACGAAACCAAA
TGCGCCTTATTCATCAGAACGGAGGGAGTAGATAATACTGAGAAGCAGCCAAATACATAC
TTGTCTGTATGAACCCTTTGCCTAATCCTCTGCCAGCCAAATGAGGTGCAATGAGGGCAT
CCAATTTGACAACCCAGAGTGCAACTGCAGACGTCGTTTGTGGCATCGTTTGGAAGTATA
CAGTAATGTCGTCCACATATGAACTAAAGCTTACTGCTGATGAGCTTTGGTACAACCAAT
CCTCATCAATTGCCCCAACAAAATCAACAAGAACCTGCAGGGAAGAAACATGGCAAAATA
AAAGACAGTACATACTGTATAAATTACCTGAAACTGAATGAATGTTCTGATATTACGATG
TAAACAGGAAAATGATACTGACCTGCAAAAGCTCGGGTAATGATGATGTTCGTCGCAGCC
GCTTAACCCACAGGTTGTGCGAAGACTTCATCCACAAACCAGCAAAAGCTGCTGTAGGCA
TGCATGCCTACATCAGCGCATGCAAAATGAGGAAAAATATGATTAAGAGGCTGCTACGAA
ACACATACGCTATTTGTGAACACTTGTCCAAACAAGTGACTGGCGATCCAATACAGGAAC
ATAACTCAACTTTGAGTCACCATGTATCATACTTTTTTAACGAAGTAGATCCCAGACAAT
AAAATCTGCATAGAACGACCATTTTCTAGTACTCACCTCAATAGCATGAATGGCTGCTTT
AAGTGCCTGTAGCTGTGAAGGAAGAACTTTATGATTTGGCACATCGTACAAACCCTCAGG
CTCCCTGCATGTTGCCACATGTATAGCATATCTTTCTTCAAGATCAAAACCAACCTCAAA
AATAGAGTGGCATATTCTGCAATGTTTTTCATCTCTCCAATACAGATCATGACAACTTCC
ACAATGAACGAGTGATTCCTTGAATGATCTCTTGCCACCCTTAACAGCAGTAAGGGAAGA
ATAGAAAGAAGTCCAGATCCATTTATGTAACGCTTGTAACCTTTCCCACTTCAACATCTT
CTCATCACTTCTCCTCCCAACTTCAATTCCTATTGCAGATGATGCATTTTCAAGATTACC
AGCTAGATATGTTGGAATAGAAGCACTGTCAATGTCTGATAGGGGTGAAGCTCCATCTTC
ACTACTTGGCTTGGGTGAATATCTGTTTCCACTGCTTGTCTCGGAACGAGAAGAATCAGA
TGATGCTGTGAGCGCAACTACACACCCATCTTCCAAGTGTTTTTTCATGCCTTCAAAAAG
ACATGATTGCCTCTTTCTCATTGATGCAAGAAGATGAGCTTCCCTCATGCCCCTGATGTC
TAGGACAGACAACAGCGAGAGTAAATCCTGCAATGCAAAAAAACAGAGTCGGTAACTTTA
TTTCTGGAAGTTTAACCTCAAGTGATTAAATAAGAGGCATATTTAGATAATAAGAAAATT
TAGCAGGTGAGCAACCTGTGGTGAATCTATCACTTCCCAGCGACCATCTTCTGAGGACTC
AAAGTAGACCCTGTGATGCCCTGGATCATCTGCTCTACAAGGGCCAAGGAAGAGCCAGTA
ATTGTTATATCTGCGATCTGATCCTAAGAGAACAATTTGTGGCTGATGTGCAAATCCTGT
GGATGATTCGTTAGCTCCAGAGTCACCAATGTAATCCTGACTCCTCAGGCTTCCTGACTG
TCCTTGCATAGAAGAATCAAAACTGTGCGGGCTTCCTGGTCTATTAAAGTACTCATCACT
AGATTGATAAATGGCTCTTGTACACTTCTTTATCTTTCCGCCTGAGGCGTGCGACTGTGC
TCTCTGTATGTTAGACAGGACACTTTGTGGTTCCTATGAAAAAGAACAATGATCCTTTAA
GTCCTGAATGGTCGTTTTGCAACTTCAGTAAGGTTTAAGCAATGATGCCTTGAACAAAGA
TGAGATGTTGCAATTGAAATATACCGGAAGAGACTAAAGGTTACCTCAAGCCTTGGAACA
GAACCCGCACCAGAAACAACATCTATCAAAGCAACCAAGCAATCCAGCTTCTCATCGATG
CTTAGGTCTGAGTACTCGCCTTCCATCAACCCTAGAAGCCATCGTTCTCCGGAATAACTT
TCATCAATTTCACTGCATTTATTCACATTTTTATGTATGCTTTTCTGTCTCCACCTGACA
ATTCTACTTTCATGCTCAGGATAACTCTCTTGTGAACCATCAGATTCATCACCACTGCTG
CTAGCATCCTCATCATCATCAACAGTTCCAGAATCCTCAGTATCTGATCTAGGATCTTCT
TTTCCTTTAATCCGAGGATCAACACGGAGACGATATGCAGAAGGCGCAATCTTCTCAAAC
AACGTGATATCACTAGAGAGAGTTGAGAAAATAAGCTGCTCTACTTCTGATGCGCCAGAG
AGATTAAGACCAATAATCTGAAGAGAACAATCAAGTAAATGCCACGGAGATACTCAACCA
GAAGTATATACAGAAGGCCAGCTATCATCGATATGAACAGTTTATTTCTGATACTACCTG
TGATGATTTGGCAAGTTCAGCAACCTTTAACCCACCGCTTCCTTTCTCAGACAATAGTGC
AAACAATTCACCTTTCAGTGTACGAGGACATAACCCATATTTAACCATTTGATTTTTCTC
CTATAATTGAATAAAAGGATATATGTTACTTTGGAACATACTAGAAGTACTTGTAGGGGG
AATCTATTGCTACAGCATACATACAAATATTGGTAGCTGTAACCTGAAAGGCATGCACAC
TCATATACAAGTGTTAGATCTAGAATGATGAGGTGTCTCATTAAGTACCTTGCTAAAGAA
ATTCCGATTCAACATATGATGATCTGAACCAAAACCTGAAGCAACCAGAACCTGGCGTAG
TATTTCAACCCAAGTAAGAGAATTCAGGGATTTCATCCAAAAATTCACATCGAATTCTTG
TTCCCTAACCTGAAAGAGAAACATAGAAGCAAACCATATAGCTATTGCATTTTTCAGATA
AGTTCTTCAAACCGGAAGCAAGTATGCAGGATGACAGTTCTCTCATGCATCCATTCAAAA
CATTCGCCCTAATGAAGCAGCATCAAGTAGTCTGAATTCTATCTAGTTACCTCTCGGCGA
ATCTATAAGAAAAGAAAGCAAGACAATTACTAGCTCAGTGAAACTCAGACTCTGGTCGGC
GTTCTATGAGAAGTATGACAAGACGAACACCTCAACTGAAACAGAAGTTTGGTGCTGCAA
TTGACAAGTCATGGCACTAAATAAATGTAAATATGAGAAGAATAGCATACTCAGTTTCTT
CACACAAAGTTGTATGATTTATTGGACCATATAGAAAGATAATGATCATATTGATGTCAC
ATTTATTGGCTATTGCACAATCACTGTTACTCAATGTAATGAATTACGATGAACACGAGT
CAGTAGCCTCGTGCTACTAGAAAACAAAGCCGATTCATCCTACGCTGTCATTTATTAGAC
CCTCTAGGTCCATATTGTTCTTCAAGGAAATCATTAACTTGATATCCAGAGTAGACTGGA
ACAAGAGCATAACAAAAAAAGTGCATGGTAATGAAACGGCTCGACAAATGCTCAACTCCA
GCACTAGTCTAAGGCTGTGTTTGGTTCAGCTTTTGTTACCAACTTCTGCTTTGAAAAGCT
AAAAGCTAACCAAAGGGGTAAATGTTCAAAGCACCTTTTGAGAATCTGTAGCTTCTTCCT
AGTGTAAATTTTAAAGCTGGGGGTACCTCAACTTTCCAGCTTCCAGCTTTTACACAACAG
CTTTTCCACAGCAGCTTTTTTAGAATCTGCAGCTCAACCAAACACAGCCTAAGAGAAGTA
TGACAAGACGAACACCTCAACTGTGTTTGGTTGAGCTTTTGAAGCCAACTTCTGGCTTTT
GGAAGCTATAAGCTAACCAAAGGGGGAAAAAGAGAAGCAGAATCTGGAAACTTCCCCGTA
GTGTATTTTTCGAAGCAGGTGAACCCCCAACTTCAACAATGCATTTTTAGCTGTCCCCTG
AGAGATTGATGGTATTTACCCACCTTTGCCACTCGTAAGTGAAAAACGCTTCGGTTGATG
GCCAAGGGCAGCCCGAACGAGAGGAGGCCCCATCCAGAAACCCCCTGTTCGATCCACATC
CACCCGAGCGGCAGCTTTTACAGAATCTGCAGCTCAACCAAACACAGCCTAAGACCATAT
ACTTTGACTTCCAAATGCAGCATCATATTCAGACAATGTGCAACAAACTTGCCAATACTT
CTGCCTACGTAAATAAATATACCCAAGAAGGCACAATCAGACTGAAGAAAACTAATAAAA
TGAACCTACTACTAGTTCTCCACTCGTTCAAAATTCATCTGTGGACTGTCTGACAATACT
GAAAGGATGCCACAGCATAATAGCTCTAGAATAAGCACAACGTAATTCAATCTTTGAAAT
GAACTAAAATGTACAGCACATTTCAAAACTCACAAAGTTCAGAAAGCTTAAGAATCTGCT
ATCTTTAGACGATCTTGGAACAAACACATTGCCGCTGCCCCTTTCTGTGTTTAACATAAG
TAGCTTGAGGAGACTGACATGTACTTTCCCCAACAACGAGGAGTCCTGGAGGTCACATTT
GCACAATAAGAAAATAATACAGGAAAATATGCCAGTTTCAGGGAGTTTTAACAAAATTTG
CACCTTGTCATGGAATGCTTGTGCAAACTCATCAAACGTAAAGGGATGAACATCTATACT
ACCAAAATGTGTGTAGACAAACCGGACAACCTGCCAAGAATATATTCAAATTAACAGATG
CTCGCCACAGTTTCAACATGAAAACTAGTAGGGGAAAGGTGGGCGCACTAAAATCTACAA
GAACGGCAGTAACATAAAATAAGTGAAGGAAGAAAGAATTTTTTCAGTTAACCAAGTACA
TATGGGCTATTGAGATTTTTAACAACATGCTTAAGGCTATTAACGTTCCAAACAAAATAA
CCAAATGTATTATAAGAGACATGTCTAAATATTCCTGCTGCCCAGATGCAACTAAAACCG
GTAAACTACTGGTTGGATTCATGAACAAAATTGGTACCAGTATGGAAAGATTATTGAAGC
CAGTTTTGTTCCATGACCAGCATAAGACACATACGGTCATTCACTATGCAGTAAACTCCA
TAAGTTAATAGAATAGAAGTTGGACAGACTGATCATGAACTGTTTTCCATTTCATGTAAG
GTAAATTCCATCAATGATGACAATACTACTCATATATTCTCAAAGTATGTGTTCCATATA
ACCTGGAAAAGCTTTTTCACCATTTTAGGTGATGACTCCCAAGGTTTTGTGGGAAATGGT
TGTTTCATCCTGACACTTGGTGGAGGAAACCTGGCAAGTAAATCTGCAAGAGAAGCACTA
ATACTTTAAGTAAATTGGCTTCTATTAGAGAAAATGAGAACAAAGAGGTAGAGGGTGATA
ATGCAGACCTTTACAAAGGGGGCAGCCATGTCTCCCAGTTGAAGAAAGATGAGCTGAACA
TCTTAGCGGATTAGGACCTGCTTGTAACTCACTTAGCTCAAGCTCCTCATCATCAACTAA
AGTAGCCTGTTCAGTTCGTAGTTCTGAAGATTCTGATTCATCAACTGAAAGATGGCACTC
CACTGGAGGATGCTCCTTCAAATCAGTAACTCTGCCACATGGCACCTAAAATAGCAAGAA
ATCACCATTAGTGTTCTACACAAAAAGCAGATTAAGTTCCATTTAACCAGATTAAAAGGG
TCAAATTGCAATATTTTTTGCTTTCCTTCCAAATGACCACCATTTAATAGCTTTACAGGT
CTAGATTCTCATTCTAGAGGACTAGAAGTTAGATCATTTTCTCCATATGTGGACTTCTCC
AAGTAATAGAGCTTACCTTCCTTTTACTCGGTGGAGGTCTACTCTTTTTGTTTACTTTCT
TCCATGGCAAAGTTTGTTTCTGCACATAAGGTTAAAAGGAGGAAATTCTGAGTTGCTAAT
TCAGAATATACAACTACTAAAGTTTCAAATAACATAGGCTGTATCAGATCAAATCAAATA
AGCAACTTTACTTGGGCAAGCTTTCCACCACAATCTTCGAATGGTCTCAATGACCTCAAG
CAACCACTTTCATCAATGAAACTGGAGCAATCTTGAATTTCTGCAGTTTGGGAATACATT
GCATGCCACACTGTCATTAAACCTTTGCCCTTTCCATGCTTCCTCACAGGATTATTGTCC
TCAAATGGCAAACTGGATTTCTGAGCAGCAGGCGCCATGATCTGCAGATGAAAAAAATTT
AGAAAGGTGGGCACCTGACGTTAGAGGTCTCAATATAACAAATGGAAAAAAATTAACATG
GATTACAACTACAAAAAGGGACAACAAGCACAAAAGGTCAGTTTAGCTGACAGCATCTTC
ATCTCGGGCACTAAAATAATTTATCAATCAGCAACTGGCAAAAAAACACAAGAATTTTAA
GAAACAAATACAGTGGATCTCTAATCTTACATCTAACCTAATAAAAAGGAAATTAGAGTG
CCTTCAGAAAGACTGTTACGACAAATAGCTGAATAGAAGTGACACAAAGGCAGGAACTGT
AAATCTTTCATCAACAACAACAACAACAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTGAAACCCATAAGATCTCGAAACCAAGTCATGGCTCTGGAA