Contig Data
morexGenes
Links



Map Locations of contig_80162 (6431 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_80162

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_78414 1 914 bp AK356012 Available Available None





CDS Structure of MLOC_78414






Contig Sequence (6431 bp)

>contig_80162 6431 assembly3_WGSMorex_rbca.fasta
ATCTAAGTTTCCAATCAATACAATTATAGGACAGGAAAATATGATAATAACCAATTTTGT
ATTGCCTCTAGGGCATATTTCCAACATGAGATACTTCAATTGAGGTGGGGAACAACCCTG
AGTCGCTTCATATGATTTGCAAATGGAGTGGGCAAGATCTAGGAGGCCCGCTCGTGACAG
GTTCACTTGTTCTACGCGAGACCGTTTAAACCGTTGTGTTAATAGGCTGATACAAGTATC
CCCAAACAAGGTCAATAAGAAAGTGTGGCGTGTTAACTCACCTAATGTGGATGTTCCAGA
ATCTGACAAACAAAGGGAGATCAAAGGACCAATTGTTGGAAATTCGGCTAATTCTAATGG
TGATATTGTTGTTGAACTGGTTTCCTTGAATAATGATCATGAGACAAGCACAAGCAAACC
CAAACCTAGGGACCCCAAGTATAATCAACCAAAGTGGTGTCCTCCAGGCTTAACTAGAAC
CATGAAAAGGAGGTTGCAACGCATGAGGAACCGCGACCGGGTGGAGCATGAAGTGCTGAA
GCAAAGGGACGTATTTTCCAATATAATTCGGCCTATGGCAGTCATAAAACAAGTATGAAG
GCTCAAACAAAAAAAGTCCACAAGTCCTTCCACGGTAATCATAGCGACACCTACACCATC
AAAGGCGAAGATGCAGTCACTCTTACATCGTCCACGTCACTGGATACACCCTTTTCAATT
GAAGAAACTTCAAGTCCAATCTACACACTTGGAGGTGAGAATGAGATGGCAGATACATAA
TTATCATCCTAAGAAGTATAAATGGCCAATGGAGTGTTGAAATCGTCCGTACAACAAACA
CATTGCAAATTATTTTTCGAAGTACCGACGTGTGTTGACATCAGATTTTGGCATGGAAGA
AAACATTGTTAAGATGGATTCAAATGAATAAGTGCTCTACATGAAAATGTTTTATAGTAT
TGACATGAACATCTTTGAAGTTTCGGCCATCTCCGTACAATTTCATCTCAAAGGCTGAAA
CTATGCTCAAAATACTAAGATTTCATATTCAGAAGTCTGTTTGGCCAAGTAAGCCCGCAA
GATGACCTCATATGAGAAAAATGTTAGACACGAATTGTCGTCGTCTCGTCGAAATGATCG
ATTTTGATATCAAAATAATGACAATTAAAGATCGTATGCAAAAATTAGAGTCATCAGAGT
GTGACCTACCACGATACAAAAAGTGGCACGAGTCATACAACCACCTAGGTGATGCCTCAT
TGGTCACGTGAGCTCTTCGATCCTCAAGACGAACTTGAATGAAAAAAGTTACAATACGGA
AAAGTTTCGTCTTGTCGAGATGATCAATTTTTATATATAAGTTGTTTCAAGGAGAGGTCG
TATGCAAACTAGAGAGGTAAAATAAATTCACGTTCAAGTTTCACTCGAGAAATCCGAGTT
AGACTAGAATTGACGAGAAAAAAGTGTTTTCCCCGGCTTTGTATTACAAAGCAGACAACT
GATACATCCAATGGTAGGTGCTGGGGCACACCGCACAATCATGCCCAAAAGAAAGACAAG
AGAAAAAGAAGAGAAAAATGCTAGGAGCACCGGATCAACGAAAGTTGTAATATCCCGTAA
CTTTTGCACCCATTGAATTCCACCACACTCAAGTGCCATCGCATTGCCGCATGCCAAGCA
ACACCCTCAAGGAGTGCGACAACGACGACGCTGCTGCCCGGGCAAGTCCTAGGATTTCTC
CCGGGACACGGATGGGAGTTGGGGGGAGGTAAACTCGACACCCTTCAGGAAGGGTGGCAA
CGCTCGCAGGCGTCACCGCACCGGTGCCGGCGAGATCCAACAAAGATTTCTCCTGACCCC
TCGCACCCATCGTTGAGGACCAACCCTTAGCTCCACCATGCCAACCACCCACCAACATGC
GCCGCCACATTCACGGTAACACCACCGTCGTCTCATCACAACAAACGCAGCGAGGCCGGT
TGGACTAAGACACAACCACTGTAGACAGGGACCACCAGTACCACAACTGCGTGGGAGGGG
ACAACCTCCACCTGCTCCAGCAATAGCAGACCAGAAATAGGAGCAGGGGCATGTTAGACC
AACTGCCCAGTCGGGCCTAGATCGGGCTCGTTAAGCCCCCGCCACCGCATTGCAGCAGAC
GCGGCATAGTAGCCGCCGCCTCATCGCCCGTAACGCGCCAGACCAACCGGGGACCACCCG
TGAGGGACCGAACTGGCCGACCCCGACCCAGGTCAAGGCCCTACGGTCCCATATTTGGGC
TAGCATGGCGCCATCGGCCAAGCCCCGCAACCAGCCGCCAAGGGGCCGCACCGCCTTTGT
GCCGCCCACCGCCACTGAAACTCGTCGCCCGAGACGGGAAACGCGACGGGAAAAGGAAGA
GGGCCGCCAACGTCAGCCTCACGACGCCGCGCGAGCAAGCGCCCGGCCGCGCCTACTGAC
AACAACGGCGAGAGGGAGGGAGGGTGGGGAGGTTTGGTGGCGGGGGGAGAAGGGGCTGCC
CCGGTCGCCTCGCCCGGGGAGGCGACGTGGAGGGTACGGGTGGAAGAGATTAGAACTCTA
GAACGTGAATTGATGTAAAAAAAAAATGTAAGAAAAACCTAGATAAATCATTTACTTATA
CGGAAAGTCCAGGCACCTCTTATATAAAGTGGAGGTGTCGGTTGATTGAAACAACACACA
ATCGAATAAATAAATCTACTATTTTTTATCCAAGTTTGTACATCTCTTCCTTGTTCTTTC
TTCCTCGTTCGTCCTAGGGCAGTCCATAGCCATCGTGCGTCCACGCGGGGTCTCTTCCAG
ACGCGTGAGGTTTCAGGTTTTCAAGTCTTGTGTATCGTGGTGTCGATCAGATCTCTTTTA
ACGTGAGCATCATCTCAATGTCAAGGGTACACGTGTTCATGTGTTAACAATAGTATCAAA
CAAATAGGAGGCCACCGACTTAACAGGGAGACGTGCGCCTGTTGAAACGCACAAGGAGGG
GAACAAAACAAGACACACATGCACATATTTCCTGCACTAGCTATCAGGATCACGTTTACG
ATGACACACACAAGAAAAGAGGAACGAAATCCCTTGTGAGCTCTGTGCAAACTCCGCGTG
TAGCCGTGAACAGATCTGAGATGAGCTTATCAATTCCCGTATAATAATAACAACCGACCA
TCATCTACAGGTGGTGGCTACAGATTTTCCTGACCTCCCCCTTCTTGCCCTTCTTGACCC
GGATGGAGCCCATCCTGTCCATGCTGGCGACGAAGGCCCGGAAGAAGCGGGCCTTGTCGG
CGCCGAGCTCCAGCACGAGCGGCCTGGTCCGCGCGTCCAGGAACAGGGCCTGGTCGGAGC
CCAGGACGCCCAGCCTGGCCTGCAGGTTGGCGTAGTAGGCGTGGTCGAACTGGAAGGGCG
TGCTCACGTCGAACGGCACCACCGCGCGGGCGCTGCCGCCGGTGTAGGGGCAGGTCATGC
GCAGCGCCTTCACGAGCCGCGCGTCCATGAAGGGGTCCGGCCGCCGGGTGCCGCGGAAGT
CGTAGAGGCGGCCCAGGAAATGGGCGCAGTGCGCGAAGCCGATGGTGTGCGCGCCGGACA
GTGCCACCAGGTCGGCGGCCCCCAGGCCCTTGGCTGCGAACACGCGGAGGAGCTCGTCCA
CCGTGGAGTTGGCGTGGGGGAGGCTGCCGCGCACCTTGCCAGCCAGGGACACCTTGCTGT
CTTTCCTTCCTTTCTTCACCGCGTAGTAGGGCCCTCCTGCCTGCACACAAAATCACCGCC
TTCAGTTAATTTCTTTCCTGAGCCATGTTGACCAAGCAGTATTACTCATTCCGTCCGGAA
ATACTTATTGTACGAATGGATGTACCTAGATATATTTTAATTTTAAAAACATTCATTTAT
ATTTATTTTTATCCAAGTAATTTCGGATTGAGGAAGTATTTTTTAGGCATGATGAGTCAG
TTTATTTCTACTTTGTTTTTGAGGAAAAGAATGGCAGGTCCTCTTTTATTGCAACTCTAC
AACAGCAAGCGCAAATTCTATTTAGCATCTTGTCCGCAGGTTAGCGAGACATAGACCCTG
TTTGGACCCATGAGTTAGAGTTATAGTTGGTTAGATTGAACCAAAATAACCCCAAAACAT
TCAAATAAGAGGGTTAGAGTTGTCTAAAAAAACTAACCCATCCAAAAAATGCTTATTTGG
GTTAGTGTTAGGTGGGACCCAGAAAAAGTTACTTTTCACTCTACTTCCACCACACCAAAT
CCTAGTTAAAGAAACCAAATGATTGGAAAAAACGCTTTTATTAATAATCTAACCCTATCA
TCCAAATACCTCTTTGGTTAGAGTTAGTTCAAAGTTAGTCCAGGGTTAAAATCTAACTCT
AACCTCTAACCGANTTAGAGTATCCAAACAGGGCCATAGCGTGCTATTATGTCAGATGCC
TCTCTAAAAGGCCAGCCCAAGTGCGGGAGGCCACAACATTGTTTTTTTCTTCCAAGTTTT
TATTTTTTTACTTCTGTTTATATGTCCAAATAATATAAACTAATATATTATAAAAAACTT
TAGTTTTTAAAAAATAAATATTAACCCATTTAAAAATGATATATGTGTAGAAACAATGTT
TCTCATGTAGACAACAAATGTATACAAAATATATGCAATATGTGTGAAAAACTTTGATCA
TTTACTCAAAAAATAATATGTTTAAAAAGAATTTTAGAAAGTATTTGGGAAATGTTAATC
AAGAATTTAAAAAATGTTAAACAAGTATTCAAGTCAAAAAATGCCCACCTACCTGCAGAA
AATTATATCTGAGTATACATACATTACAACCTCTGTACATAAATGTAAGAGACTTGACAT
ATGTACCGGTGGAGTACTAGACATGATAAGTAATATCCTTTTTGTTGTTTTTGAAGATCT
CCTTTTTGAGGAAAAGAACGAACTCTCCTATATGCTGCTCAGTGTGGCAAGGAGTCGACG
ATTCACATAGGGCACACTAGCTGGCAATCAAACCCGCGACCGCCTATTGATGCACGCTAG
CTGCTAGCTGCTAGCCATTGTGACTGACTAGGTCTAGTGCAAGATGTGCAACGCGGCACT
TAAAGAAACTAACAATAGCGGAAAAACTTAGCAGCTCTTGAAAAACCACGAACGATTTCC
CAAAATTTGACAAAAACTTTGAACCTGTGATTTTTTTTGGCAAAACGTAAATAATCTTTG
ATTTTTTTATTATAATTATGAAGATTTTCGAATTTTTGAATAAATTATATAAACAGGAAC
ATTTTTCGAAGTTTTGAACAACTTATGGAAAACTTACTTGTTTAAAAAATACTGATTTTT
CTAAAGAACCACCATATTTGTAAAAAAAACTTTAAAAGGAAAGAAAGAAACATAAAAAAG
AAGAGAAAATAAAAGCAAAAAAGGAAAAAAAGGGGGGAAATAACAAACAGACAAAACCCG
TTTCAGGAACCTCCAAGAAGGGGTCACAAAACTGAAAAAAAATTGATTGGGAAACTTCCA
GAAAGTTCACAAAATTATGACATGTAAACTGTAATTGAAAATACTAATCAGCATAGTGTG
TACGGTTGCCTTGGCATGCGGCCGGGCACAAAGACAACCTCTATGCATGCAAACTAGTAC
ATCAACATGACATCAGCAAAGATTATTTTAATATTGAATTTTCAAAAAAATTTATCTCTT
AAACTATAAATCCAATTGGCGATCCGTTTTCGCCGTTAGCTTTCTCGTAACGAGATCTTC
AAAACTAGATCCTATGTCGACATGTTTCGACAACTTTTTTTTTCGTCGATAGTTGTCAGA
TTACTATTATTTAGTTGTTAGATTATGAGACACTTAATAACCACATTTAATTAACTTAGT
TGTCAACTTGACAACCGTGTGTATAATTTTTTTTGCAACTACGCTTGCTTAGTACTTCCT
TCGTCTCAAAATAAGTGACTCAAAAATGACTCAATTTTACACTACTTTAGTGTAAAATTG
AGTCACATTTGAGTCACTTATTTTGGAAAGGAGGGAGTACTTACTAATATGACAAGTAAG
TGCAACAAATGTGATAAGTACGAGCAAAAAAAATAAGTATGACCACGTAAGATCAACAAT
CTTTGCACGAAACGACATCAAAAATTATGGCAATTAAGTTATTTTTATTGGATAAGTAAG
TGGTTAATAATATAGCAAGTGAGTGGAACAATGTGGCAATTACGAAAGGAAAAAAATGTT
TGTCAAAGCATGTCGACATGGGATCTAGTTTCGAAGATCTTGTCGCGACAAATCCAACGA
TGAAAACAGATCATCGATTGAATTAACGGTTTTAAAGATAAAACTTTTTAAATTTCAAAC
GTTGAAGAGAATTTTTAGGTGATGAATGTACATGTGAGCCGTCCTATGGGAGCACCAGCA
TACCCGCTGCA