Contig Data
morexGenes
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Map Locations of contig_79822 (3794 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_79822

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_78352 1 278 bp MLOC_78352.1 Available Available LOC_Os05g01994.1, FRAME:+1, EVALUE:2e-20, 13105.m00149 protein rab5-interacting protein like, putative, expressed





CDS Structure of MLOC_78352






Contig Sequence (3794 bp)

>contig_79822 3794 assembly3_WGSMorex_rbca.fasta
AATAATTCTGCAATATTCATTTTCCTATTCTATTCAGAAAATTGATGGAGTCCAATTTTG
CAACAAATATTTGGTAGGTTTTTCACAAAAAAGAATCATTTTTACCACTCAGAAAATGAT
TAAAAATAGGTAGAAATATGAGAAATGCATACAAATTGGTCCTCATCCATAAAATATGGT
CTAACTCTAGTGCAAATTTGTGTGATGCCATTTTGAAAAATATTTTTGATAGATGCTTCA
CAAAATTCCTCTATTTTTAGTACTTGGAAACTATTTTAAATCACTGATTTTGTGAACCAA
TCAGAACTCTTCCCACTGATCTATGACATGGCACCCATCCATCCATCCATCTATCTCACC
ATCTCACATCCCTCCATCCATGTATCTAGAGGGAAAAAATGAAAAAAGATAACCCCACCC
GCAGCCTAAACCCTAGCCCTCTTCCTCCCTCACTCCCCCCTGTGCTGTGCCCGCCGCCGG
CCCTCTCCCTAGCTTCTGCTTGTGCGTGCTGCGCGCCCTCTCTCTCCCTCTCTCTCGGCT
CCTTCCTCCCCTAATGCTCCACGTTCCCCCTCCCCGCCGCCTCCGCACCCTACTACCGCC
GCAGCAGCCAGATCCACCACGCCATCCCCCCAATTACCCACTCCACTCCACTCTCCTTCA
CACCTTTGGAGCTGCCGTACCTTGTGGTTCGCTCGTCCCACCGTCCGAGGAAGATGAGGG
AGATCCTGCACATCCAGGGCGGGCAGTGCGGGAACCAGATCGGGGCCAAGTTCTGGGGGG
TGATGTGCGCGGAGCACTGGATCGACCCCATCGGCTGCTACACCAGCGACACCGACATGC
AGCTCGAGCACGTCAACGTCTACTACAACGAGGCCTCCTGCAGCCGCTTCATGCCCCGTG
CCATCCTCATGGACCACGAGCCCGGCAACATGGACTCCGGCCCCTACGGCGGCATCTTCC
GCCCCGAAAACTTCGTCTCCGGCTAGTCCGGCGCTGGCAACAACTAGGCCAAGGGACACT
ACACCGAGGGTACCGAGCTCATTGACTCCGTCATCGACGTGGTCTGCAAAGATGCCGAGA
ACTGCGACTGCCTCCAAGGTCTTTGCTTTTTCCTCTTCTCCCTTTCCCTATTTCTTCTCA
TGTTCCTCTGTTCCGTTCATTAGTCCTCCGCGTCGGCGGCGTGGATCTGGAGCATAGGAG
AAATGGTGGCTGACGGATTTGTGCGGGTGTAGGTTTCCAAGTGTGCCACTCGTTGGGTGG
CGGCACGAGGTCCAGCATGGGCGCGCTTCTCATCTCCAAGATTGGGGAGGAGTACCCGGA
CTGCTTGATGCTCACCTTCTCTGTCTTCCCCTACTGCCGCCCGCAGCCTCAGATCAGACA
AGTGATATAATGAAAAACTTTGTTTGATCAGGTGAAAGGGGAGCTACATCAGTACTTCTG
CATTTTAGCACAATTTATTCAAGATGTGTTAATTAGGGCATGTTTGGTTCATTCCTGTGC
AGCACTCTGGAATGTCATACTCTTTCTGGTAATGTTTAATTTTTTTGTTATGTCTGTCAA
CAACAAAACAGGTAAAATAAAACTCACATCAACATCAGCACAATGTCAAATTATGTTCTT
ACATTGTGATTGCATAAATTTGGAGTCGTAAATAATACCTTTATATCTGATGCTGAAGTC
AGCTATAGAACTCTAAAATAAAAATGTATTACAGAACGTGTTATATATGCCATCTTTAGC
TGAAGTGAGAGCGTGGAAATATTAGTTTCCTACTGTTATCATCACCGCTAAGTTTTCCAC
AAATGTCATTCTATAGATAGTTTGTTGTTTGTTATTTGTTTTACAAGTACTAATCATCTG
CATAGCTCGCGACTGACAAGACGATCATACATCCGAGTGCATTTCCCTGTTTTGTTTCAG
GATATGTTTTAGTAGGATTTTGCTTGTGTCACTAAGAGAAGCTGTTTTCTACCTCGTGCA
GTAGCTCAGAGAGGAAGAAGAAAGAACAGGAGCTGCATGCTGGATGAAACTGGACCAACT
CCAACCCAACCCTAGTACTTGTAGATGTTATACATAAAGTAGATGTTATATATTCAGTCA
TCCACTTTTGACTGCCCGCTCGAGCGGCTCGATGAGCTTAATTTGAGGGCAAAGAACACA
GCTTAACATCTATCTATAGCATCTCTCGCCACATCTTAGTTTCGATTTAGTGATNNAAAA
ATAAGTTTAATACTGTATTTAGCAATGCTGAAACTAGAATTGGTAGGTACGCCCTATCGT
GGCACCTACATTCTCCTGGTCACCTGTATGCTCATCTAATTACAGTGGCGTTTGAACTAG
TTTTGAAACTGATTAGATGGATCTGTGAAGTGTTTCTTCCTTCCTTATAAAGCTGGCGTC
TTTGTATTGAAACTGATGTGTGAAGTGTTTCTTCCTTGTAGTGGCGTTCGGCGAATCTGC
TACAGTCAGTGCGCTTCATTTCACCAAGTAAAATCAACTCACATGAATGGAAATTCAAAG
AAAGAGCGGCAACTTCTGGCACACCTACATTGCAAACATTAGCAAACAAACACAATTGCC
CCAATGGGATAAGAACTGCTCCGAGTTTCTAGGTGTTCATTAGTGAATAAATTGGTAAAG
CGCTGCTGATGTATGATTGTTCGGTTCTGTTCACCTTGCTAGAGTTCCTTGGTAAAATTA
ACAATCTCAAACAAAATGCAAACTTTGACATTTAGATATGAGTTGTACTTTTCTTCTTTG
CACGAGAGTATATTTATCTTCTCCCTTCAGCATGGGATAATTCTGGTGCAAAATTGTGTT
GTGAGCAGTGATATTGCCTGATTGCTCATCTTTGTTGAACGCGTGAGCATTTTCTATATT
TGGACACTTAGAAAGCATGGCTTGACATTTCCCATGGGCAGTACTATGCCCGTTTGCTTA
AAGCGCATGGCATACTAGATTATATTGTATTTTGGTATCAGCTATTCAGGACTGTAATAA
CAAATATGACTTCTTACAAGTTAGCCAGTGAATTTCTAAAATCCGCATGCCATATTAGGA
TAGCTTCAACACCCTTTCAATAAATGCAGAATGCTTTACCTCTTCTCAGCCAAATTGACC
ATGTGGCATATTCTGTTTTTCTCTGTTGCAGATTCTTTACTATTTCCATCGTAATAGTTC
ATTTGTACTATGCACATCTGCTGAAGATTGATGAGGAAGACTTTGGAGGCCATGCCGCCC
TAATTCAGGAGGGGCGCTTTGCCTCGTTCACCATTTTCCTGGTAAGCTATCGTCCATAAT
CATGTCTTCTCCATCACCACCTCCTAGTTGCACCGACGTTGAACTCATTTCTACCACACA
TGCACATGTCTTACTAGTGATTTCTTTTCACATGTTATCAGCTTGCCTACTAACTAGCAA
CCGCTACATGCACATAAAACTAGCACTATCACGTCTATTGTTTTAGGAGGAGCTGTCAAA
CAAAAAACACAAGCTTGTAACATTGAATGAACTCCTTTAAGTTCTTGCGTCTTTCTGTTC
GCGCATAGAATGAATTGGGCGTCATCAATTACTAACAGATTATTCTCTCCGCTTGCAGCT
TTCATGGACTCTAGTATACAACTAGGCTCACTTCTGAGAAGCCCGTCTGCAAAAATATGA
TGCCGGATTTTCGTAGTTCATTTTATTCACTCTTTTGTACCATTAGCTATGATGGATGTA
ATGTCACAGTACTGTAGAACAACGTCATGGAGGTGTACAATAACTTAGGTGTTATGTAAA
CTTAGGAGATGTAT