morexGenes - Barley RNA-seq Database

Contig contig_7977

Source Contig contig_7977

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_7977 (2254 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_7977

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_78345	1	914 bp	AK354319	Available	Available	None

CDS Structure of MLOC_78345

Contig Sequence (2254 bp)

>contig_7977 2254 assembly3_WGSMorex_rbca.fasta
CATAGTCCAAATGACATGGGAGAGAGTGATACACAGCTATCACAACTACCAAATATGTAT
ATCATGGCATGATCTGCATGCCTTATTTGAAAATCTACTAGTCCCCAAGTCTTGGTTGAT
GATGGCTAAAGAGACCGGACAAAGATTACTGACCTTAACTAGTTGGTTTATAGCATACTG
CCTGAGTCGAACATCGAAGGATGACAATATCTCATTTGCCTGAAAGGAAAGCCGAATACC
AGTTGTTAAGCCCCAAATTCAACAAGAGTAGGGATCAAAGCAGAAAATCAACAAACAAAA
CCTCGATCAGGGTCACATGGACGTAATCTTTCACATGCGAGTAACGTTCTTTCACATCTC
TGATGATGAAATCACTAAGTTCCCCGCTAAATTCAACCCCTGTTGGACCACCTCCAACAA
CAACACAGTGCAAGAGCCTGCGTTTTTCGTCCTCTGATATGCCTGTTTAACAAAATAGCA
TTGATCCATCAGTGATAATCAAATGGATATTACTCCCTCCGTTCCAAAATAACTGTCTTA
ACTTTNNNNNNNNNNNNNNATAAAATTGTATTAAGCTTAAGACACTNNNTTTGGGACGGA
GGGAGTACATGTTTGTGCACACAAGGTATATTACGAGAATAAAGCATATGTGACATAAGA
AATAGATTTGTCCAAAATTCATCAAACAAAAAATACAGTAATGAAGCAAATGAAACATGA
ATCAGATTTATCCTAAATTCATCAAACAAAAAATGCACACAACAGTGTCTACTTGACTTA
CGTAAATAATCATTGTATGGAGAACAACAAAGTGGGAAAGTAATAATTGACGACTTTGTG
CTAGCAAAGGATGATTAGAAACATATTGAGCTGCTACCTACCAGGTACATCAGACAGCAT
CAGATTAAGAAGGAGCTTCCTGCGAATCTCTTGAGCATGGTGTACTTCCCGAAGAAAGGT
TGCATGTTCAGTAACACCACGTATACCGAAAGTCGATGCCTCAGCCCCACATCCAAAGAC
CAACTTGTCATACGAAACCTTGAATTTCCACGGCTTCAAGGTATCTTTCTCCCCCTCAGT
AACTGTCTCACAATCAATCTGAAATCAAACAAGTCCGAATAAATGGATGTAAAAGCTGTG
GGGAGAAATGCTCATGTTGCTCCCAAAAAAAAATCATGTAATATCCCAAACCCTTGTTAA
GTAAATGTCTAGCGTTCAAAATTGTGAAGAGCCATTCTCAGCAGTGTTAAGGCAGCAAGC
CAGCAGGAACTGCCTCTGTTGCAGAGTGAATATTCTATTGGACAGACTCCTGAACAAGCA
AAGGTACTTAACGCATACTGCTGAACAAGCCAAATGATATAGAAGTCTTAGGTGCATACT
GTTAATATCTACTCCCTATGTACCCACTAGTTTAGTTCTCCCCAACAACAATTATTTAGG
TACTGAGGGAGTATGAAATAGAAGAAGAGACGTGTGATGGATGGATATAAACAAGTTTGC
TTTTCTCGGTAGCTGAAATTTCGCCGTGTTAAAGAGTTTTGGCCCAATGGAAATGAAGTC
TAAAGCTAGCACAGTTAGAGAATATATACATAGTCATAAATGAGTGGGAGATGTTGATAA
CTTTTCTGTCTCTCATTCCATTAGCATAGAGCATAGGCTAATTGTCAACCAGCGCCTGCT
GAATGGGAGTAAAGCGCAGATTCCTCTTCCTTTCCCCCCATCCAATATCCAAAAAGATGG
GACGTGATTACGGACATCAGAAAAGGTCAAGCACAACCGCGCACACAGTACCCCCTTCCA
CGAATCTCGGGGGCACACATTCCGCGCACGCACATCTATCTGTAGAGGCGACGCCGTCTG
ACAGGATCAACGCGCGCAGTCGCGGCACCTCTCACCAAGCCAGGGAATCTCACCGTGTGC
GCGTCGGGGTCGACGGCGGTGCAGCGGGCGAGGAGGAAGTAGGAGCCGGGGGAGCTGGAG
ACGGCGGGCTGGATGCGCGCGAGCGGCTCGGCGACGGAGCGGAACTCGAGCGTGCCGACG
CAGGTGGAGGCGAGCAGCGGCGTGAACACCATGTGGTTGCGCGGGGAGACGCAGACCACG
TCGTAGCCGCTGGTGTCGAGGTCCTTCATGAGCCGCGACCCCGCCCACCCCGTCCCGAGC
ACCACCACCCGCGCCTTCTCCCCCTTGCCCGTCGGCCCCAGCCCCGCGAGCCCCCTCGGC
AGCACGGCACCGTCCCCCGCATCCCCCGCCGCGG