morexGenes - Barley RNA-seq Database

Contig contig_7930

Source Contig contig_7930

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_7930 (6750 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_7930

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_78237	1	1300 bp	MLOC_78237.1	Available	Available	LOC_Os01g48210.1, FRAME:-3, EVALUE:1e-84, 13101.m04994 protein PAP/25A associated domain containing protein, putative, expressed
MLOC_78236	5	2806 bp	MLOC_78236.1	Available	Available	LOC_Os01g48220.1, FRAME:+2, EVALUE:0.0, 13101.m04996 protein protein of unknown function DUF1421 domain containing protein, expressed

CDS Structure of MLOC_78237

CDS Structure of MLOC_78236

Contig Sequence (6750 bp)

>contig_7930 6750 assembly3_WGSMorex_rbca.fasta
CATACCCGCTCTATCCGATGGGTTTCTGATTTTCCTATTTATATATCCATGGATAAATTT
TTGTCACATACCATTATCCTAATAGGATTTTTACCCGCACGATACGTGGGTAATGGGTAC
CCATTGCCATCCCTAGTAGACGTATACGCCTCCAGTGCCAAACTATAATTCCCCAGCGAT
GAGAGAGGATCGCGGTGATGCCGACGGCTCTAATATGCTACCGATACCGGGCACATCTCG
CCATCAAAACCAGTGTCACAACCTGCATCGCAACACGCATTACTTTTGTAAAATCACGCA
CATGACTCACGAGGCGGAGACTTAGAGACGGCGACACCGCACCCAAACCAAACCAAACCA
ACCAGGCCGTCTCCCGTCTGATCCGAAAACGATCGTCCAGCAAGGCATCCCAACGGCCGA
TCCTCCCCCGCTGCCCGTCCGTCAGCAGTAAACAAAAACAAGCACCGCCACATCCAAGCC
GAGCCGAACCAGCTCGAGCAGATCGGCCCCGCATCTCACTCGCCCCGAAGTCCACCCACG
CCCCCGCTTTCCCCACTTGTCCCCGTCGCCCTCCCCCCATTTTTATTGCTCCCCACGCCT
CGATCTCGCCTCGCCTCGCCTCGCCTCTGATTCTGAATTCTGATTGGCCTCCCCTATTTT
TTTTCCCCCCGGCACCCTCTGTTTCACCCTGCTTTTTCCCCTTTGCCCGCTTTGCTTCCA
CTCCTTCTCACTCGCCCCTCTTTCCTCGCCCCTTCCTCCGCTTCGGATTCCCTCCCATCC
CGTCCCACCCCGGCTCCCTCGCCCGCGTCGCGCACCAACCCAAAACCCTAGCCAGCCAGC
CCGCGCGCCCATGGCGTCGTCTCCCGCTCGCCCTGCCGCCGCCTCCGTCTCCGGCGCCTT
CGGCCTCCCCCCCGACGCCCGCTGCTCCTTCGACCAAACCCGCCGCCGCGCCGAGGTACG
TCCCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTTTCGCCGTCCATCTCCCTACTGCTACTAGCACCGCGCGGGGTTCCTCG
ATCTCGGGGGTTGATGCGTTTGTGAGCGGGGGAAGCAGGATTCGCAGGACAAGAGGCAGC
TGGTGCGGACGTTCGTCAACGTGTACGGACAGGAGGGGTACCCCAAGGACGCCGTCATGG
CGGCCGTCGAGGAGTGCATGAGGAAGCAGGCCGAGGGGCTGCTGCATTCGCTCGAGGGCA
TCGGCGGCAGGCTCTCGCAGCTCGAGCTCTACTGCTACAAGCTCGAGCGGTCCATCGGGG
AGCTGCGCAGCGACGTCATGGACTACCACAGCGAGGGCACCGTCAACTTCCGCTGCCTCG
ACAAGAACCTCAGACAGGTACGTGCCCTGCTCTGCCTCCAGATCCGCGCACGCGCAGCCA
ATTACTGCAAAATGCCTTGCTCTCGTCTCGAGTACCCCCACGGCCCTGTTAGTCCAGGCT
GTGGAAATCACTATTCAGATTTCACCATTGATGAATATACCTCGGAATTTGCGTTTCACG
TTTGTCTTGTGTGGTGCTTAAGGAGTCACAGTGGAACACTTTCACGAGCTGCCATTCCTA
AACTACGTACGGTGGAGTCAGACTTACTGTTCTCGTGAGGCTTGGGTCATTTTTCGTCAC
ATTATGAATAGGTAGGTCTCTCAGCTGAACTATCGTTTCTTCTGTTGACCAGGTTCAGAA
AGCCGTGCAGATGCTTCAGGATAAGCATGAGCCGGCCGACACGGCGCAGCAACTGGCCAA
ACTTCAAATAGCGCATGAATTCCCTGCTAGAACAAATGAAGCCACTGCCTTGTCGATGCT
TGCTGCAAGGGAAAATGTCAACGATCACAGCACACAATTCACAAACCCTGAGGTTTCTTT
TGTGCCAATTCACCAAGTTAATGCCATGCAGTCTCCTGCTATGCCGAACCAAAGTAGCGG
CGGTTATATTCTGCAGCAACTGGTGCCCGTCTCTTTGAGCACGCAGCATGATCAGCAACA
TCCGAGCCAAGCTGCAGTGTACTATATGCAAAGCCAAAATCATGTGAACTGCGCAGAGAA
CAACCAGTCCGAATCTTTTGTTCAGGTTATGCAGCCTCAGGTCCAGAACCATGAAGCTAG
GGTTGCAGTTGAGCTACCTCAGAAATCTAGTCAGCCAACGGAAATATACCCTTCAATGCA
GCATCATATGCTACAAATGCCTGCTCAGCATCACGAGTCACAGGCATGGCGGTCACAGCC
CCCTGTCGCGCAACAGCAGCACTACAGTGTTCAGCAAGTCCCGCCACAGATGGTTCAACA
GAAAACATCTTCGCCTCATTCTCAGAGTACTCCTCAAGTCACGCTCATGTATCCTCCATA
CTCCTCTCAGAAGCCTGCCAATGCTACCACTGAGCCACTTCCGAGAAGTTTGGTAGGGCA
GTCTCCATACTCTTCACATCAGCAGAAGCATCATGAAGTCATGCCTTCGTTTTATGGCCA
AGGAAACACAAATTTGCTTCCCACAGCAGAGCATAATATCCAGCATCAACAGCCACAGCA
ACTGCAAACACAGAGCCAGGCCTCATGCCCACCTCAACCAAGCAAGCCAAGCCACTGCAG
CATTGCGTCGTATGCTGTTCAGGGTAGTGGCCGAGCCTACACAACCACATATAAGAATCC
TGCCGAGTGCCCTGCAACTGTTGTTGCTGTTCTGCCTCAGCATTCGGCAGCAGCTCCTAT
GGCGTTCCATCATTTGGGACCCCAAGTCCTGCATAAGAATCCATATGGAAGTATGTTCGA
AACGGCCAGTGTAGTAGGGTATCCAAAGGATCTAGTTGGGAGTATGGCGCTCCCAGTGGT
GACTGCGGACTCCAGTGCCATGGTTGATAAGCTCAATGCTGGTAGCAATGTTACATCCCC
ACGAGACTGGCCTGCATAGTGCAGAATGGGCAGTTATATTGAGCACTTCATTGCTACCAC
ACAACTTATTTCCATAACTATAGCTGGAAGCTTATCGGCTCTTACCCGGGTATTTCATCT
GGCTTCCTTTTTATTAGCCAGCAGATTGGTACAGATCCTTCTACTTTTTTTTTCTGCTGA
AGGGTCAATCTGAAATAATAATGGTAGATTAGTCTAGTGATGATGCTGGCGTATGTCCTC
ACTTTTAATGGACATATCTTGCTTGTAACCGACAGTTGGCGATGAACCTGCCCCTTTGCG
ATATGAATATATGACGAGTTTACATCATCCTGTCGGCTGTTTAAATAATGGTTTACCAGA
GTCTACATAGTATTGTTGTGCCTCATTTTTTATCTAGTTTTTTGTAGTATGCACTCCCTC
CATTCACTGTTATAAGATGTTTTGGATATTTCAATATGGACTCCATATGGCAAACACACT
AAAATGTGTCTACATACATCCAATTTAAAAAAAAAGGTTAGAGCATCTTATAATAGTGAA
CAAAAGGAGTAGTGGAGAAGAAAAGAGTCAAGATATATGTATCTAAGCATCTGAAAACAA
ACTTATCAATGGCTCATAATTCTATCTTTTCGTGAGCCATAATTATGTTTCAGATTGAGC
CCTTTCTTTTCAACACTTCAGAAAAGAGCAGTATGTGTGCGCACACTGCCACTGAAGAAA
GCAAGTGCCGATGTGATTTCGGAAAATAATGGCGGCTGCACAAAAGTGTTGAAACAGCGA
TTTGGCACCCAGGTTCAGATGAGCCTTGGCATGAACAGTACCGTGATTTGAAATAGAGAA
AAAATTCGAATTTTTTTATGGTGCAAGATGCTTCTGTGCTGTGCAGGAACTCCGTACAAT
TGGTTGTGAAGTTTGGACATTCAATGAGCTCGTGGCAAAAAAAGTCAAATTTCGGATGCC
GGAGAAACTTTTAAAAATTGTACTGTTCATGCTTGATTTTGTCTTTTTGTCATGAGTTCC
TCGAATGTCCAAACTTCAAAACAACAAGGCCAAAAGAAAAGTCAGATGAGCCCGGGCTGA
ATTATTGTGAAACAAGCCACTACTTTCTAGTAACACTGTTCCAGCTATTGTGCTCCTTGC
GACAACAGAGCAAGATGAGATGGTGTTCGTTTTGTGTGGCAATTGTGATACATTGTCAAA
ATGCTTGGCACAGTGAAATAAAATTATTAGAGTGGCAATTGTGATACATTGTCAAAATGC
TTGGCACAGTGAAATAAAATTATTTTGCTTTTGCCACGGACTGACAATTGTGATGATTGT
CAAAATTTAAGAGTGGCAAAAATAAAATGTCAAAAATCTGAAGTGGCATAAAAAAAATTG
GCAAAAAAAATAAATCCTACTTTTATGTCCTGGGAAAACAAGATTGGTGTCTCATTGCGA
AGTATGCATATATTGCGTATGATTGGCAAGCAACTGCGTGGTATTCCAAGTTTGTCCATG
TGTAAGATAAGAATTTTCTTTTGGCCTTATTGTTTTGAAAAGAGACCCCAGCCTTTGACA
TGACACTGAACAAATGCTATGGCAGCGTAGATGCAACAGAAAAGTTTGAAGCCATCACCA
CAACAACCAAATTACTACATGATCACGCTGCTTGGTCAAACTGCTGATTCAAACAATACA
ACTGAGAATTTGGTTCGATCAGCATCACAAGGACTGGATAATAATAAACTAATAAAACAA
ACAACACAACACATTCAGGCAACCGACTGCTGCTGCTAACTTAAATATTTGCACCATGCC
ACCATGGTGTCACATAAAGCTCCTCCCGCTGTCAAATTCTGTGGCACCTCCGAAAACGGA
TTGCAAATGCCATCAGTAGCAGCACACAGCTCACCATCTGCTGATGGGCGTGTACTGTGG
GAGTGTGTTTGTGAATCTGTCGTACTCCCGCGGCCCTTTTCTTCTTCTGCTGCTTCCCCC
ACTGCGACGCGATTTTTCACTCGGTGCCGACCCTTTACCCCGACTCTGCTCTCTTCCGTT
TCTGGACCCCTCTTCGGCATCTTCACTGCTTGATGCATCAGCCTTGGCCTTCTTTCGTGA
TTTCTTTTTTGACTTGGAGGAGGACTTGCGTTTCCCCAATGGTGACGAACTAGTGTCCTC
GGGTTGAGTATTTCTGGGCAGTGGTTCATCATCGTCTAACGCATGCCAGTTATACAATGC
GCCATTCTCACTGTCAAACTGTTGGGGCAACGGTTCCCAGGGCTCTGCTAACATGTCAGC
TAACGCACCATCAGTGTTCCAGCCTTTACGGTCGAGGAGCACCGAATCCGGTCTGACAAT
GGTGCCCAGAATGCTCCTGTCTGGTCCCAAGCCCGTAATCAACTTGGGATCAGTTAACAC
AGAATAAGCCTTTGAAAATGCTGATTTCACCTGTACCATGATTCAAGTTTCTTTATCAAA
TATATGTTGTGTTGCCATGTAGATTTTTTTTATAATGCACTTCAAACATCAAAAGCCTAG
TTACAATTGTAAGTTCACTTATTAAGTGAACAAACTGGAGCATTTGGCAAGAAAAGGGCA
AGAGTACCATATACTGTTTATCAAGACAGGTTGCTGTCAAGTGAAGTACTTATGCACACT
TGCGTTAGTTGATGCAAATCCTCAAATTTAAGCACATGGTATTTTTATGCCCAAAGATAA
ATTCAGATTGATGGCCACAAGTTGAAAACAGAGATTGAATAGCCATTCTGGCCATTTATC
ATTAAAGAAAACACTACGATTCTGGTCAGTGAATGATGGTGTCAGACAGCCACTTAACTG
GAATAATACTAAAAAGGCAAGGAAGGATCAAACCCAATCAAACCGCCAACAAGAACCAGT
AAAATAATCAGCAAATTATTACTTTTATCAATTGCTAATTTGTTATCCATAAGAGCATAC
AGCATTATGCAATTATAAATGAGCAGCATTGAATTATTCAAGTATCCCATTCGTAGCATG
TCATAGACAAATAGGTGCACAAAGATAGATAGTAACTTTGGAAAGCTACCTTGAAGTAGT
TGAAGGAATTCTTCCCAATATCGTTATCAGGTACCTAGGCCACGAAATAACTTCAATAGG
TAAACACACTGCTACTGAGAAGTATCATTTCAACCAAAATGAACAAGGACAACAATCTTA
CCATGGGATCTTGAATGGCTATAAGATGTGGCCGGTCAAGATTCACAAAGCTTAAAAAAC
AGATCAGAAATAGGATCAATCAACAGCAGGACATCACAGTAGAGATAGTACTGAGGTGGG
AGTAATAATACAACTAAAACTAGTTGTCTTACTCATTATCACTCTTCAAGAAAAAGGTTC
TTGCAGAGTTGCAGGATATTCCAACATCCGTATAGTTCAACTTGCGTCCATAAAAGTCAA
AAAACTTTACCTGACATGGAGAAAACATAAACTTATGAAGGGTTGCAACCATGTTTTGTA
TCTCCAATCATTACAAAGATATTGTATGTTTCTCCATCATATCGAAGGTAATGCACATTT
ATCCAAAAGTAGCAAAGAGAAAATAAAACAGGCATTTCACATGTGTGCATTGGTATATAA
CTATATATCCTGGTGCACATAAAGAAGGCAATGACTATTAAGTGCAACTTTACATAAGAT
AAGGACCTTGATAAGTGCCATCCGTGTGGCACGAACACATAGCAACTCCGAACGTTTTTG
GTGGCAAGTTTAGTGACACGAGGATGGCAACTTCCTGTTCGTAAGGCAAGTTTCTGTTTT
TTTTCTTTGGGAAATGTTTAGCGCCAGCCG