morexGenes - Barley RNA-seq Database

Contig contig_7888

Source Contig contig_7888

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_7888 (2456 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location

Predicted Genes from contig_7888

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_78148	2	1706 bp	AK366177	Available	Available	None

CDS Structure of MLOC_78148

Contig Sequence (2456 bp)

>contig_7888 2456 assembly3_WGSMorex_rbca.fasta
AAGCAACACCTTTTTCACACGGCATGCCATGTCGCCGTCCAGTCATAGTGGTTATCCCAT
CATGTGAGATGATTGGAGGCTCCAAGACTGCGATCTGTCTGGACCGCGCGGTGGTCCGTT
ACTCTTACGTAGATTTTGCTCTTGGCACTAACCTGATGTTGATGTAAGGTAGGAGCGGTT
TCTGTACTCACAAAAACACATTAATCGTACAACAACACTTCATCTATGTTCAGCATAGCC
CAAGCTTCTAAACTGGTTCCAAAACCAAAGTTTGATTGTTCAGAATAGCTCCCCAACTTT
GAAAGCGATTGGAATTCCAAACTCCAAACATGGCTGTTTGTCGTAGCAAATTCCCGATTT
TCATGAAAGTGATGGTAAAAGCTATCTGAAGTTTTCCAGTGTGATTTTTCCTCTTTTGTT
TCTGTAGCTATGCCCAGAAGCTTCTCCTTTTCTTATCTTTCTCCCATGGTTAATTAATTT
GTGCCTTGACCTGATGATGAACTCTTCATTTCACAGGACCTATCCTCCTTGAGGATTACC
ATCTGATTGAAAAGCTTGCACAATTTGACCGGGAACGCATACCTGAACGTGTTGTTCATG
CACGGGGAGCCAGTGCAAAGGGGTTCTTTGAGGTGACTCATGATGTTTCTCAGCTCACAT
GTGCTGACTTTCTCCGGGCTCCTGGGGTTCAGACCCCGGTTATTGTCCGGTTCTCTACCG
TTGTGCATGAGCGTGGAAGCCCTGAGACCCTCAGGGATCCACGTGGTTTTGCAGTGAAGT
TCTACACCAGAGAGGTACTGATGATCATTCTTAATGTCGTATTTCATGTTTTTCCTTTTG
AGATGAGATTGTTGTTAAAGCTACTTTATGCCGTGTACAATCACGTTCGAGCAGTTTATC
TTCCAGTAGCATGTCAATTCGCCATAATGCCTTTTTGTCCAAGCCTTTTAAGCACTAAAA
TTCTGGCTGCTTTGCAAGTTGAGACCATAGCACATATTCCCTTATGTAGTAGTATAAAAT
CTGACACTGTTTATAAGGATTGAATCCTTTGCCCTGCCTTATTTTCCCTTCTATGTAATA
AACTGTTTATCGGCTGCACTTGTGGATAATTATGGCTGCAGACCTTTTAAGTCAATTTGT
AAGTTTGACTGACATCTGCTGGCATGCATTTTCAGGGTAACTTTGACCTTGTTGGGAACA
ATATGCCTGTGTTTTTTATCCGAGATGGGATGAAGTTCCCTGACATGGTCCATGCTTTCA
AGCCAAGTCCGAAGACCAACATGCAGGAGAACTGGAGAGTAGTTGACTTCTTTTCGCACC
ACCCGGAGAGTCTGCACATGTTCACCTTCCTATTTGACGATGTTGGCATTCCACTCAACT
ACAGGCACATGGACGGTTTTGGTGTCAACACCTACACCTTAATCAGCAGGGATGGAAAGG
CTCACCTGGTTAAGTTCCATTGGAAACCTACATGTGGTGTGAAGTGCCTCTTGGATGATG
AAGCTGTTACTGTTGGAGGCACCTGCCACACCCATGCCACAAAGGACTTGACTGATTCTA
TTGCAGCTGGGAATTACCCAGAATGGAAGCTTTTCATCCAGACCATTGATGCTGATCACG
AGGATAGATTTGACTTTGACCCTCTTGATGTCACCAAGACCTGGCCAGAGGACATCATCC
CACTGCAACCAGTTGGACGGATGGTACTGAACAAGAACATTGACAATTTCTTCGCGGAAA
ATGAACAGCTTGCTTTCTGCCCAGCAGTCACTGTCCCTGGAATCCACTACTCTGATGATA
AGCTGCTCCAGACAAGGATCTTCTCATATGCTGATACCCAAAGGCACCGTCTTGGTCCAA
ACTACTTGATGCTCCCCGTGAATGCCCCGAAATGTGCTCACCACAACAACCATCATGATG
GCTTAATGAATTTCATTCACAGGGATGAGGAGGTACTTTCTTCTTTAGAGCTTTTCATCC
CATTCTGCATGCATGATGCAGTACTTCCTCCAATTGACAGAAATAATGTGTAGTTATGTT
TCAACTTCACTGCATTTACATGTATTTTGCTTGATTTTCAGGTGAACTACTTCCCTTCAA
GGTTTGATCCTACTCGTCATGCTGAAAAGTACCCTATGCCTCCGCGTGTTCTATCTGGCT
GCCGGGAGAAGGTATGCAGCTTGGAATGTCAGAATTCTTGTCTCACCACAGCCATTCGTC
AGCCCTTGAGCCCATTAGAACTGTTTCCAGCTATTTTGTTAAGAGTGGTGACTTAAATAC
TCCGGGGATTAAACGCCCACCATGTGTTTAACAAATGGTTTTGCTACATTTGTACTTTTG
GAACTGCAGTGCATTATCGACAAGGAGAACAATTTCAAGCAGGCTGGTGAGAGATATCGG
TCCTTCGACCCTGCCAGGTACGTTGTCCCAACTCCGTTTGATTTGTTTGAAGTCTT