Contig Data
morexGenes
Links



Map Locations of contig_78788 (5558 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_78788

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_78134 1 903 bp MLOC_78134.1 Available Available LOC_Os08g01590.2, FRAME:+1, EVALUE:3e-14, 13108.m00081 protein expressed protein





CDS Structure of MLOC_78134






Contig Sequence (5558 bp)

>contig_78788 5558 assembly3_WGSMorex_rbca.fasta
AACCACATATGAAGATATATGCTCTAACAGTAGGAGATGGAGGAGGAAGCGGACGAGGCT
CAGGCTCCGACGCAAGCCATCTCCGACAAGGAAGAAGATCAGTTGCAGTACGTAGGATAT
ATTCTGCATGCTTTTGTATAGATATGAGGGATGAAATATGAAAGAGTTGGATGTGTAGAA
GAAAATTTGAGGCGTGACCGCTGATGTTTGAGGGTCAATTTGCAAGGTCTGGCTGTGAAT
GCTCTAAAACTTGACTAGTAGGCTTTTAAAAACAAAATTTTAGTTAAACTTTTAGAATAA
GGTGAATAGGGGACAACTTATTCTAAAAGCTGAAAAAAACTAAAAAAAACTGGCCCTTCC
CGTGCTTATTTCTGGAGACCGGGTGATGAACCAAGATGCATGTTACGATCGAGCTGCCTG
CACAGCACATTTCCATTCTGGGGCAAGCTTTATCGTGCTCGTCGCAGAGGCAGGCACGAT
GTACGCGGCGAGGCCCTGTGCGCTCCCATGTGCCCATGACATTCCATTCCGGTGCAGCAG
TAGTACAAGAGAGGCTCTGGAACGATAGACTAGCTAGCTAGATGAGGAAACCACTGGGAT
CGTCTTGAGGTTCTCCCTGTTGGGGCTGCCCAAGGAAGAAGAAACACACACGCGCGAGCT
GGAGGTTGAAGAAGGCTCACACAACACACACGAGACACAAGAGCACACAGTTCTTCCGGC
AACGCACTTCTGCCTTTTCTCTTACCCTTTTCTCCAACCACACATATAACTGATTACAAG
ATTTAACAAAGATAGATACACACGTACTACCTGCCTGCTCCGCTATCTTCTCTCCACTAG
CCGGCAATAAGGCCACGAGTAACAACCTTTGACATGGCCACACGATTCAACCGTTTTCAC
ACTTATCAGCTGATTACCCGGCCGCATCTAAGACCCTGACGCGTACGTGCATGCTACTAC
AATGATGGAAGCCCGCACATGCATCCATTCTCTAAATAACTAACTCACTACTAACTTGCA
TGAACACACGCGATCTCATCTCTACGTGTGTACACGGTCGCAGCTAGTAGTGGACATACT
TACGTGCATGACTCAACAAAATCTATGAAAATAACCATGATGAATGCCTACACAACAAGG
TTAACTCTAACACTCCCCGGCCCCTCTGCTCGCGTACGTGGGTGAACAAGGCCACCTAAT
TGCATGGTTTTAGTATTGGAAATCATGGATGTACACACCTAATAAAATAGATTTTGGCAT
TCTTAATGAAGTAAAGTCTGAAATAAACCTTGAATTCATATCCCTCGTTAAAATTAAACC
CTTACCTTTAAATCCCCGAAATTTGTACCATTTTTGAATCCCGACCAATGCTAACCCTGA
CCGGTTTGGCACACCGGAAAATACTGTTCTCGACCACGATCATAGTATACTCTCATTGAC
ATCTACCATGAGATTGCGTCCGCGTGCACCATATGGACCTCGCTATTATACAAGGCATGC
AGTGACATCTACCATGAGATTGCACACCATGAATCCTCCTTTCTCGCCTCGATTTCGTGG
CAGATGACGACGAAGATAGCGGGAGCAGTGGGGGATGGAGAGGGGCATAGACGGGATCCA
CCCGCGAGGGGAAATTTTCTGGAGTGAATCAGCATGGGAGAGAGGAATTAAGATGGATAT
GACAATCCAGACGCACGGTCAGCGAGAGCGAGGAGTTATCCTGGTGAGGATTGCCTTTTC
TGATGCACCAAACTGATGTACACTGGTATTAGGGTTGAATTTGACTGGGATTAGAAAGGA
CAGAGTGTGAATTTCAGGAATTCAGAGATCAGGGTTTTATTCAGACTGATTGTATGAGTT
CAAGGTTTATTTTAGACTTCGCTCTTCTTAATGGGACTGGACTGACAAGCACAGCCCGAT
CCGAAGCATTCACGCACGACGCGGCGCGGCCTTGTACACTCTCACCGTCACGGCCATCAA
CGGGCGAGCATGTCCATGTACATTCCCCTTCAACTCTCCGTCGGAGTCTGCTCATCCTCT
TCCTCCCTTCAGTTCAGTACTCCCAGCCTCCCAGGTCACTTTCCTTCTCCAGTCTCCACA
ACCACCAGTCCACCACCCTACGGCCTACGTGCTCGATCAATGGAGTGGGCACCGGAGCAG
CAGGCTCTCGGGGGACTCGGGCTCGCCGGCGTCTGCCGCGAGACCTGCCGCGTGATCCAC
CGCGTCATGCTCCCCAACTTTGTCAACCTGGGCCCCCGCTGCTCTCCGTGCTCTTGCTCG
CCAATGCCGCCGCCATCCGCGCCCTCTGTTCCCGCGTCCTCTCCGACCTCGACGACGACT
GTCCCGGCCTCCTCCGTCTCATCACGTACCGGCTCGCCTTCTCCCTCTTCGTGGCCGTCT
CCATCGGCGGTGTCCTCGTGCTCCTGCACCTCTGCACCGCCGCCTACGGGTTATGCGTCG
CATCCCTCTACTGCACCGGCGGCGACTTCCGCGCCGCCGATCGCGTCCTCAAGGGATTCC
CCACGGCCCCGCTCACGCGGCTCCTCTGCACATTCCTCCTTGCCGCAGTGCCCTTTCTCG
TGGTCTACACCTCCCTCTTGGTCTCCGCCTTGCTCCAGCCCCAGGAGCTGCATGGCGCTC
CGGACAAGATCATGTCGCCGCTGCAGTTGCTGGGATGGGCTGCGTGCCTCGCCAGCGCGG
GGTACGTAGCCGTGGTGTGCCAGCTGGCCTGCGTGGTGTCCCTGCTCGAGGATGCCATGC
TCTTCGCCGCCCTGCGCAAGAGCCGTGCGCTCGTCGCCGGCAAGTTCTGGGCGGCCGCCG
GCGTCTTCGTCACGCTCGACGGTTGCATCTTCGCCGTGCTGGTGGCTTTCCCGGTTCTGG
TGGTGGACGATGCGCTGGGCCTCGGCCTTGGGTTCCAGGTGGCCGCCGGGGCGGCGATGG
CAGTGGCTCTGTGCGCGGTGGTGCTGTTGACGCTGGTGGCGCAGCCGGTGGTCTACTTGG
TGTGCAAGAACCACCACCACGAGGTCGTTGACAAGGTTCACCTCGACTGAGCACGATCTC
CTCCACGAGAGGCCGTCACACGGGCGTTGAGCTGCGGCCCGTCAAGACTCAAGACGGTGC
AAACTCTGCCTAGCTAGCTGCATCCTGTCCACGACTCCACTGTAGCAACTAGCAACTTGA
AAAAGATTTGACTTGAGTAGTACACAGCAGCTTAGTAGTAGTAGTACTGCTGTAGTTGTA
AAAGTTTGTGTCTGATTATCACTGTACCGTCGAAATTTCATGTCTGATTATCACTGTACC
GTCGAAATTTTATGTCTGATTATCACTGCACCGGATATGCATGCTTGTATATGTCGATAA
AAATTATTAGTTATAATGATGGATATATATATACATGTGTCGTGTTTTGTAATTAATTAG
AAATATGCTATCGACTTATGCTAAATGTGTTTCTTAATTTATTTGTATATATGTTTTACA
CGTGGACTGTAGGATGGGTGGAACGGACTCATCGAGTCGTTAGCGCTAATAAGGCTCGTT
GTAATGGGGAGTATCATATACTANTATCATGCATATGATACTACATCCGTAATGCGTAGT
ATCATGTGCTAGAATCATAACACATACTCAATCATCTATTTCTTCATTTAATATGATACA
GTATCATAATATGATACTCAACCCTCTTTTTCTTCATTTAATTACATGACATATCATTAA
ATATGCCTAGTAGGCATGCATGATACTTACTTCGTTCCTAAATATAAGTCTTTNNNNNNN
NNNNACTAGTGGACTACATACGGATATATATAGACATACTTTAGAACGTACATTCAATCA
TTTTGCTTCGTAATTAGACACCTAGTAAAATCGGTTAAAAGACTTATATTTAGGAACGAA
GGGAGTATTACTTATGATACTCCCATTACGACCAGCCTAACCACGTTGATCTGCTGGGCC
AAGATAATGGTGTGATATCGCCGGAGCTTGAGCTGGGGTAGACAGGAATTCAAGTACTGG
TGCTGCACTTCAACAAATGTTACATCTGCTTACCATAAATCACCGGGCTAGGAAGTTGCG
CGAGAAGCTCGTGAGGGACGGATGGTTGGAAGATAAAAACAGCCTAGACCCATCCCTGAA
AATCAACGGACGGTGATTGGTTGAGGAAGTAAGGAACATAAGTTTACGTTAGTTACGTGT
AGATGTAGCATTTCTGAAAACGAAGCATGCAAAGCTGGTGGTGCTTCTTTTCACTGGGTC
GTTCTTAGCGTCCGCCTCCGCCTCCTCTTCCTCGCCCGCCTCCGCCTCCTCTTCCTCCTC
GTCTGCCTCAATCTCACTCATCAAGAAATCCGGGACGCTTCCTGATGGGACAGGTTGGAA
ACAAAATCTACCAAGTGCCCAAATCTCTATCAGCATGCCGTATGAATGGTAAGAAAAACG
GAGAGGAATTTCTGGGTAGTGAAATCTGAATAGCAAATCGGTGAATGATTCGGCGCTTAG
ATCCATTGGTGGAGACCGGACGAACCTGGTGATCCAGGGGATGCGACGCGGTGAGCTTTG
TTCCTCCGATGGATGCAGCTGCGCCTGCGTGAGGGGATTTGAATTTTGAATGGCGTCCGG
CCTGGTGGATGTGGCAGCATGGTGGCGATGTAGTGGGCGGCGGGGCGCGAGGTAGGACTG
GTAAGAGCTATGGCGAGGCGTGCGTAGGTAGTACTGGCATACGATATGACCGTATTCGTT
CGGTATGTGCTTGAAAAACTGGAATAAACGGAAACAGGTGGGACCGAGTGGGGACGACTC
GCGCTGATCCAGTGGGCGAAGCGACGGCGTGGGTTCGCGTTGCGCGCGCAAGCAGTTAGA
GAAAGCCATATTCGAGACGCGGATTTTTCCTAACCATATGCGCGCGCAACTCGTATCGGT
GCCGTCCATCCGCATGTTGTCGCATCAGCCGGGCCCGCACATGTTCACGCCCTGCAGCGT
ATTCTTCTAGGATCAAGTTTTTCTCATGCATGTATATGTCGCTGTATTGTGTCTTTTGTG
GGCCATCTGCTAATCTAGTGCTAGTACTGCTGCTAGCCCTTGCCTGTACCATTGGTACGG
CATGTGCTGCTATGCGACGGTAGTCACCCGTTTGACAGCGACAGCACTATCCTGAGAGGA
AGCAAGAAATCAGACGGATGCTGCGGTAGTTGCATTTTGACAGATTAAGTATCTGAAGAT
AATTATTCTGTTTGTTAAACCACTAGTAATATCTCACAATCCTTTTCTGGAAAATTACGT
AATAAAGTGCGGTGTAAAGCAACGATGAAGTTCCGACACGTGTCTTAAAAGGACCCATCG
TAGGTGTCCTCTCCCCGTTATCCATCCATTCCCCAGCTCTCCTCCTCAACTGTCCTTAGC
GTAGGAAAGTCCCCTCTCACGCGCGACCAAATCCATCCGTTGGTGCTCCTTGCTGCCCTC
TTGATGCAGATTCTTGGCCGGCGGCTGTGCCGCACAGGTAGCGCGCGGAAGACGCCCGGT
CGAAGCCGAGATCGGAGAAACAGGTATCCTTGTCATGC