| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_7874
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_78121 |
1 |
1526 bp |
None |
Available |
Available |
LOC_Os11g36860.1, FRAME:-1, EVALUE:1e-71, 13111.m03608 protein retrotransposon protein, putative, unclassified |
| MLOC_78122 |
1 |
682 bp |
None |
Available |
Available |
LOC_Os06g48200.1, FRAME:-2, EVALUE:1e-29, 13106.m05124 protein glycosyl hydrolases family 16, putative, expressed |
CDS Structure of MLOC_78121
CDS Structure of MLOC_78122
Contig Sequence (7186 bp)
>contig_7874 7186 assembly3_WGSMorex_rbca.fasta
GACATTGTTTTGTCTATGTATCCACTAATTTATCTATGTTTTCATTCAATACANNNNNNN
NNNGGATAATAAACAATTATCTTTGTAACAGGAAATATAATAATNNNNNNNNNNNNNNNN
NTCTAGGGCATATTTCCAACAAACACGCAGTAGTGTGTTTCACTTGGTACGGGCTCCGCC
CGCTCGACCTCGGCTGAGTGAGTCTATAACATTTCGACGAGCTCCTCGACCATATGAAGT
TGCACAGTTGGTGCACATCGGTGATCGTGACTCCACCGCTCACCACAGGTGAAGCAGAGA
CCCTTGGCGCGACGATACGCACAGAGAGACGCCAACTTGTCGTCGTTGGTGGCGGGCTTG
ATGGTGTCGCAGACGCGGCGATCTTCCTGGCATTTGTTCGACTGCCCAGCGCCAGCCTTC
GGTGGTGGCAGTGGTAGTGGCAATGTCGTACGCAGCGGCGCCAATCCAGTCGCGGAAAGT
TAAGGAGGAACGGAATGTTGCCGATCGTCCCTTCAGAACGTATCCACCACCTCTTCCTGC
AAACATGCAAGATCCACAACAGTATCCAAGGTTTGTGGGCGATGTAAAACAACAACATCA
CGAATATCCCGCTGTAAACCCTTCATAAACTGCGTAACAAAGAAAGCCGAATCCCAAGAG
GGATGGTGTGCAAGCAGGTGGTGCATGGTTTGTGTAAACTGCTCAGCGTAGTCAACTACC
GTGCCCGTTTGCCTCAGCCCATTGAACTGTCGTAACAAGTTTTGGAACTCCTCACGCCCT
ATTTGAGAACAGAATGGCAGTAGCAAAATCCCCCAAATCTTGGTAATGTAAGTGGGCTTG
GGAGGACTGGAGCCATGTGAGGTCTCCATCCTTGAAGCACATAGCGGCACAACTAACCCA
TGTGTGAAGACTAAGGGTGCAAACACAAAAATAGGCTTCACATTTGAGGCGCTAAGCCTT
GGGGTTCGTCCCATCAAACATAGGGAAATCGAACTGTGGTGGTGGTGGAAATCTATGATA
GCCCTGACCCCTGGAGGACGAGTCTGCATGTGGAGGGAAATCAGCCATACCAGTGGTCGG
AGGCAACCGTGGGGTGTGGATCTCCCCCAACGATTTCCCCTGAAGATCTGTTGCAACGCC
GTGGCCGATGGGCCAGTGACCACAGTCACCGCGAGCTTGAAGCTGCTCGCCAAGCCGAGG
CAGAGATGCGTCGGCCACTGTAGGAAGCAAGGACGGCAGATCTGCGAGGCGGATTAGCGG
TGCCGTCTCCTTTTCTTTGGTCAACCATGTATCCGGGCCCGACGTGGATGTCGTGCGCGG
TGCGTGGATGCTCTGGCGCAGCTCCGTGACCTCCGCGCGAAGTTCATCCAGTGAGCGCTC
GATCGCCGCCCTCTGCCCTAGGAGCTCGAGGACGATTGGGTGGACCTCTCTGATCTGGAC
AGGCATGGCGCTGATCGCCGCCGTAAGATCAGCCAACGCCTTGTTGGTCTCCTCCATGGT
TGTTGCCTTCTCATTTAGGGTCTGGATGATGGAGGGGAAACGGTCGGCCAGATTTGTGGT
GGAAGAAAAATTTCGATGGGGATTGGAGTGGCTCTGATGCCAATTGTTACGCTCCCGGTT
GGATTCCACTCTTAAGAACAGGTTCGATACAAGGTTTGTTGTTGAATTTGAGGCCAGAGG
AAGAGAAAGAGGGTTTGGGAGGAAGAAGCCGCCGTCGATTCAGAGATTACATCCTGCACA
CTTCATGCAGGAGGGATCGATGCCTACTTAACCTAACGGCTGGTGTCCGAGACTTAGACC
GCGAAGCGGCTGTTAGGCTTCATCTGTCAACGGGGCCGTTCTGGCCCAGTGGTGGCGTCT
GCCATTGGGGCGGAGCCATCGATAATAGGCGGGCCCATCGATAACACAACATGCCTGCGG
TGTGAGCCCCGGATATTTCGCGATTTGTGGCCAGCGCACGCAGTGACTTGTAATACGCCA
TGAAGAGCGGTGGGGTTGCAGATCAATTTGATGGATCGTACATTCGCCATCTACCTCGAT
CCAGCTAGAGCCTAGAGGGCTAGAGGCCAATGGCGACTTGGAGCATGGAGTAGATCAACT
GGCCGGGCCGGTGTAGCGAATTAAAGTGGAGTTGAAAGGCGACGCGCGCGTACGACTGCG
TCTTCAGTCGCCATTGAACAAGCCCGGCGTTGGGGACTCGATCTCGGATCCAGACCCCTG
CCGGTCGCATGGGATGCGCTCCGCCGCACGCCTTAACTAAGCGCGTCCGGCACCGGCCCG
GGCCATGCAATGCGATGCATGTACGGGTGTATGCACAACGGCGACGTTCATTCATTCGTG
GGCCTGGCGCGCCGTGTTAATCATCAGCAGCTAGCAGCCGTACTTGCTGTTAATCATCAG
CAGCCGTATAATTGTACCAGCTCCCAAATTATGTGGACACAACTACCTTCCTCCTCTGTG
CCCGTAGTGTCACAGATCTGCACAAAGCTGGAAGTGGAACCGGCCGGCTACTCAGTACTC
ATTCATCAGTCCAAACCATGCTAACCCAAAAGCAAGCCGTGTCACGTACTCGCGTAATAG
TTACCACCTACGAGTACATGCATTGCCCTGTGCGGCTGTGCCGGCCATGCGCACGCAAGC
TGGTGACGCGCGTGGTAACGGGGCATGTTCCTATAAACATCCACACAGGTGAGCAGGCCG
TCTAGGGTAAAATTGACAAATCTAACTGCTGGGTTAAAAGAACTCTCAAAGTGAACCCGT
GGAGAAAAAAAATTACAGGGCAAAAAGTCCTCCACGCATCAACGAAGATGGACGTCACAT
AAAAGAGTCAGCTCGATGAATTTTTTCCTCCACACGTTCACTTTGCGAGTTCTTTCAGTC
CAGGGGTTAGATTTGTCGATTTTACCCCATCTAGGCGACTCTGGCCTGCACGAGTCTACC
TTCTACGATGAGGTCAACCGGCACGTGCTTGGCTCAATGCATCCTTCTACGATGAGGTCA
GCCGTCACGTGCTTGGCTCAATGCATATGCTTACCGCCATTGTACCTTCTACGATGAGGT
TGGCCGGCATGTGTTGACACACATACTCTATCTTACTAGCACATTTGAAAAATAAGCAAC
AAATCTGAAATCTTCATATTGATAAAATCATCATAAGTGTCCCTTAGTCAACGGGTCCTT
GGTCATCCACTAAAAGAGCATAGTTAAAAGGTCAAAAATAAAGTCAGAAGAATACGAACG
AACGTATCAAGTCTAGGACTTGAACTCTAGTGGGCTGGTTTCATCGAAAGATACAAAATC
ATTTGAGCAACACTTAATTCAAACGTAGCCTTCTGAATGAGTGCACATGATTACATGGTT
TTTCAACAAATGAGATACATATGTAAAACCAAATCAAACGACGGACATTTGAATCATAGG
TGGTGCATGTAGGTGACATCTAGTTGAGTTAGCTAGGCTCAATTAAATCTTTGTCCTTCT
TGCTTTAAATTATGACCATTTGTAATCATCGGGTAGTTAAGAGAATATGGTGAACAGCTA
TGAAAGATCTTGCATGAGTTAGTGACAACAATCATGATGTTTTTTCCTTCATGATTTAGG
CAAAGCAACATGTGTAGCATAAAATACAGGATCAGTGATTATGGTTTGTTTGAGCGTCGA
GGCAAACAACCATGCCAAGATTGGCGAGGAGGTTGGCAAGGGCAAGGCCTCCAGCGCCTT
CGTCAATAGCCAAGGAGGGGCCTTCTCACCACGCAACAGCTAACAGAAGACCGAGCGGCT
CCTTGGCGAGTGTCAGGCAACCATCGGATAAGCTTGCCGTAGTCCTCCAGCATCCTTGCG
CCGCCGCTGGAGGGACGACGCCGGCAACAACGATCACGACGGCACGGACATCAACGACAG
CGTGTCAGGACAGGACGACCATACTTACGAAATGGTCGTGTGATATAGGGTTTTTGTCTT
TTATAGTTTTGAATAAAACCGTCAAAAAATCGTCACTTGGGGGAGGCGTTTTAGCTTCCG
GGTGCATTTGCATCTGGATGAACAGTAAAAAAAAGTAGTAAAGAAAATTTTAAAATTTTG
ATTTTTTTGTAGGTATTTGTGTTAGTGTCCTAAACATGCTTGACAATTTTCATGTAAAAT
GAAGTAGTAGTGTTTCATCTGGGAAGAGAAAATGAGGTGTGAGACTTTAGGATAACAATT
AATGTTTAATTTATCTTTTTGCACATGTCAAAAACTCTTAACCTGTTTGCGTACAATATT
TCAAGTACCATTAGAATGTGATAAAGAACACATAAAATTTTATGGTTTTTTGGTTTCAAA
AATCATTTTTGGCACGCCGAAGCACGTGCTCTCGGAAGCAGAATTGCGTTTTCATTGTTC
GTTTATGTAAATTATATTCAAACTTGAAAGAAATCATTAGTTTGAATTGTTAGCCAAATG
TATGCACCTATGATTAGATGAAGGCCTCCCGCATCCGTATGCGCGGACTGGTTTTGTGTT
CTCGAACGGGTACGTAAGAAAATTTGTGGGTCGCCGTCGGAGATGCCATAAGGCAATCAC
AACAACCCTAGGTGCTTGTGCTATGAGCATCTACAACCGAATTATTGGCAAATCCGACCC
CCTATACGCTCGTGGGAGCGTTCGGCCACGCCCGCGGACAGCGCCCGCCGACCCCTCATA
TATCGTGTCGCACATCCACATACGTCAAATGATATCTTCAAATCACTGCAATCCATGCAC
GTCGATCATCCGATACAAATTGTTCGAATTCAGCAGTTCGAAACAAAACAAATTAAAGCA
CAGTTCAACAAATGGATATGTCAAAATAAAATCAATGTGCGAGCGAGAAGGGATACTTGT
CGGATCATTCGCGTTCATCCATGCGTCCTGCTCGTTCAGCTTGTCCTCCTACGCCTCGGC
AGCCAACTCCGCCCGCATCCGGGCTGCGTGCGCTGCCTGCATCCTGGCCGCGTGGTTCGA
TGCCGCAACCGCCCTTGCTGGCTCCTGCTCTCTACCGTCGTTGATCTCCTTCTTCTTCTC
CGAACCCATTTCTTCGCATGCGCATTCAAGTGGGTTTGTACGCCAACTTGATCTTCGTAT
CCTCCGCGTCCTTACGTGTTGCAACCTCTCCTTCTCGAGATCAATCTGACCAAATATCTT
GGACTTCTCAAGTTCCGATTTGATCGCCGCCTCTTGCTTCTCCAACCTGATCTTGTCCCT
CTCAATTTCAAGCCTCCTTTCTGTCGTCATCCAATCCCAGTCCATCCTCACCTTTGGCGC
ATCCAAAATGAGCTTTTACCTCTCCTCTTTCTTGTTCTCGCTTGTCGAAAAGATGCCTTT
CCATGTGGACGACATTTTTGTAGTCGCGACGTCACGGGAGATCCTCGCCTTCTTCCATTT
GTTCCCCATGACTTGTCGGTTATCATTTGGCACAGTAGCTCTTCCATTGATAACAACCTC
ATCATCCTCACCGCCTTTTTAATCCTAACGTGCGGTGGGTTCGTCCTCATCTGCTTCCAG
ATCCCCCCGTCCCAACTCGTCACCTCGTCGGCGACCAAACCCTAGCACCAAGTGCCATGG
CCGGCTCCTTCCAAAACAAGGGCAATGCCCACGTCTACCCCCGCGATATCTCCCTGTCGA
CGTCTTTCCGCCGGCCTCGCGAGCGTGTCAACATGCCGGTGCACCAAGAGTGATGGCACT
GGGAGCACCGCGTCCCGTTGCCGTACCCCGATGTCACCCTCCAGCACCACTGGCATCTGG
ATCCGAAGAGGATCCCGGTGCCAGCCATGCCGCGGTCGGCACGGATGCACGCGGAGGAGG
TGAGTCGCTGCTGACGTCTGCTGACGCCGGAGTAGCGGCTCAACCCTGTCTACACGACTG
ACTCTCCCCACTGGGAGCTCTAGTTCGCGGTCGAGCACGAGGAGCAGCTCCGGTGCGACA
TGCGCAATGTGCAGCCAGGAGGCCCTTCACCGCCCCCGTCCGTCGTTAGCGAGGAGGACC
ACGAGGCGGAGGCCGCCTACCAGGCGGTGCTAGCAGCCGTTCTCCGCGAGAACAAGGAGG
AAGAGGAGCGCAAGGCCGACGAAGAGGCGACAACGTATGAGGACTCTCACCGATCTTTAT
GGCCGACTTTTAATGTTTAATTAATACTTGTTTATTATTTTTTAAAATGATTTTTTTCGC
GCGCCAACAAAAATGGATCAGACTAGAGCGCATTCTCTGACCCAAACGTCGAAACGAACG
TTAATTTCCGCCTGGCCGATCCAAGTGGACAAAATCGGCATCCTCGACCGGTTGGAGTTG
CTCTAACAAGCCACAACCAAGAGTAGAGCTGCAAGACAACCTGATCAAGTTGGAAGGCAC
ACTCATTTCACCGTCGGCCAGTGTGGCAGTGAAGGCGACGTACGTAGGGCGCGCAGGTGC
AGCTAGCAGCTGGGACCTGACGGATCATTACAAAGGCCATTGTCCTCTCCTCTGTCGCGC
TTTGTGTCTTCTTGCGGTCAGTGGCCGTGCGCCCATGCCTTGCACTGACCGACCTCCCTT
CACCTTACACGCAACGCGCGGCGTGTAGGTGTGTGGCCATGCATGCTCTGTACCCAGTGA
ACGGAACAGAAGAAAATGATGTTGCGTGTGCCAATCCAATCGTAGATAGGTCTTTTCATT
GAACCCATTACACAAGAGTTTCGGTTTTGAAAGGTGGGCAGAGAGCAGCACCAGTACATG
AACTGGGCCTAAATATACTGGTGATAACGCACGAGGAGGCAATATATTACGCACGAGCTG
GGCGTGAGCACAATTACACGAACTGGGCATAAATGACAAACAAGAATTTACCACGGGCTA
GTTTACACATCTCCCCGTCACTAATCATTATTGATTTCCGTTCACTTTATACAGACACCC
CCATCTTCCCTATGCTCCGGTCGTCCTGCTCAGGTGATCGCCCTATGCACAGTGCAATGC
TAGCAGCTGTGCGCGCTTGCTCGATGGAGGATGGACATGGGGACTACATGGAGCACTCGG
CGGGGACGCCCTGAGCGAAACGCTTGGGGTCGGTGCAGTAGTTATAGATCATGTAGTTGC
TCTGCACCCACCGCATCCGCTGCTGCCGTGTCAGGTCCAGCTCCTGATTGTACCATTCGC
CGGCCGCGCCGGTGCCGGGGGCGACGTCCGTGCCGACGCTGGCGCC
