Contig Data
morexGenes
Links



Map Locations of contig_78179 (6135 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_78179

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_77988 1 967 bp MLOC_77988.1 Available Available None
MLOC_77989 1 480 bp MLOC_77989.1 Available Available None
MLOC_77990 1 226 bp MLOC_77990.1 Available Available None





CDS Structure of MLOC_77988






CDS Structure of MLOC_77989






CDS Structure of MLOC_77990






Contig Sequence (6135 bp)

>contig_78179 6135 assembly3_WGSMorex_rbca.fasta
TGCATGTAGATTTAATACGTACAAAGAAACAAGTAAGTGATCCTCAATTTCATCTCCAAA
CCTGATTTTACTCAGATGTTCATCCACAATCTGAATCAGTACCGGTATGAAAGAAAGACA
GATATTGCATTATTGATTAGGATTGCACCCTAGATAGTATTTTATTCATATACATATTCT
ACATAGTTTTCTAATCAAATTCCATATTCATATTCTATATAGTTTTCTAATCAAATTCAT
ATTCTACATAGTTTTCTAATCAAAATTCATATATAAAATTATAAATTTGGAGTTACGATT
TAGAAGATATGAGTATTTTTAAAAACATTTGATATGTATTGCAGGTTTAATATAAAAAAT
ATGTTTTTTTTATAAAATAACATGACAGACTAAGAATATCTATTTCCTTTATTAGTAGGT
ATAGATTTCACTGTTATTAGGGATTTGACACCAAAGGTAGAGGCACCGTTTTCTCTACCA
AGGGCCAAGTATGATGTTCTTGTCCTATAATATTTATACCCATGTATCTAAAATTTGCAG
GAGGTTACTTAACGACTATCACCTTGGATAGGATGGAAGATGCACTTGAAGAAGGCTCCG
CCAGCTGGCACCACCGCGTCGCTCCGCCGCCAACGGCCGCGCCAGCGCGCAACCGACCAC
CCGCGCGGTTTGTTAGCAGGAATGGTGAAATAGTTTGTTTGTAGTAAATAAATATAATTT
TGCAGTAACTTATATTGATTATATGTGCATAATTTCTAGAAGATCATCATGGAAGCACCT
CATTTTTTGCTCCTACTAAGTAATAATAGGATGAAAGGGGATCCATATCCTTATTGCTTT
GGCTGGTCCACCCGCGATATGAAGGGGGCTAGGGGGGCTTCTTCATGTTCACACTTCATG
ATCCGAAAAATTATAAACAATATAACCTTATTAATGACATTTATCATAATCGGATATAAG
AAATGGTTTGCGATGGCACACAGCAGGTTTTTTTATTTTTATCGTCTGTTGCAACGCACG
GGCATTTGTACTAGTTTTACTTAGAACACTTTTGTGCTTTTATTTTGCTTCTGTGTTTTC
TCTCTCTATCTCTCTTTCTCTTGTCCACTTCATGGATACATTTCTTCCTGATTTTCCTTT
TACTGCTCCATCATGCCTCACACAAAGATTAGGGGGTGAGGTGCTAATAACCAATAGTTC
CAGGTGAAGGAAGATAGCACGACACGATCTCACCGTACAATAGATAATTATAACTAGATC
GAAATACTTGTAACATTTGTGTCTAGTGTCTACTCGAGATTGGTCTTTGAATGTTCAAGT
AACGCCAACACTCCAGTAGACATAATCATGTCACAACAGCTATATATGTCCATATGCATG
TCTGCAGTTTTAGCATGTCCTGTTGATTCCAATAACATAAGAGATAAAGGCACCAGTCTC
TCCTTATTCAAACCAAGAACATATTTCATCAGCCGAGAGGACCATCAGGATGAACCCAAA
AGGTAGGCAGACTATTGCAATTTCACCTTTATTATATATATTGACTTATGTCACACCTGA
TACAACATAGAAGTTCACATATATACTTTCTTATAAACAAACAACCGTTTATTACTTCAC
ACGCATCATCAGCAGGGTTTCCTGCAGAAGCACATTAGCGTGGGAGGTTCTAAGGCGACG
GGATCACACCACCCGGTTGGGAAGCCCTCCTTGCGGCAGTGCTCAGCGCATGGCTTGTCC
TCGCAGCGGAAAGTAGTGTAGGTCTTGCTGAACCACTGGCAAGTATTGCGTGCAGATCCT
GCAGTCAAAATAAGGACACCATTTTGCTTAGGAGCATCAAACAGAGAATGGAACATCGAC
AAACCTTGATATTCTTCAGATTGTTGTTTTAGGGAAGGCTTACCAGGAAGCAACAGGAGT
GGCATGAGCAGGAGCAAACACAAGCCTTGCATCTTGATCTTGTAGACCTCCATGTCTTCA
AGAATAAACACCCAAGGGAGAAATGAAGCTTGCGGAGAAGAGACGACGCGGATCCAAATA
GGTTTGTGCTTTCCCTTCTTATAGCCATGGATGGCCAGACCATATAAAACAACTATGTAG
AAAATAATGAATATGATGCAATTATATCTTGAAGATGCATTTCTATCTACATGATGCAAA
GATCAGCTCTATCTAGACCAAAAATTTCAGCATCTGCCAATGTATACAACACCGAGCTGC
GTCATCCCTATGTTTGTTTTTCATCCAAAAAAGTCTCAAGATTGCTTTGAAGGTTTTCTT
TTTTTAGAGACAAGACATCAACCGAGCGCTTGGGCAATCTTGAGACTATTATGGATAAAA
ACAAACATAGGGATGATGCAGCTCTGTGTTGTATAGCAATCCTGAGATCTTTATGGAAGA
AAACGAACATAGAGATGATGCAGCTCTGTGTTGTATGCATTGGCACATGCTGAACTTTTT
GCTCTAGATAGAGCTGACCCATTTGGTTTGTTTATCATTAAATAATAATTTTGGAAAGCG
GCTAGAACTTGTATATTTTTGTGTTTTTAGGGTCGTCAAATAGAAAACCTTATCCACCAG
CTAACTGCTCCGGACCAGTCCGCTGACTATGATGCGGGAGCAGGCCATCCAACCGCAACC
CAAACATCCACCTAGGTCCGGTCAATTTAAATTTCAAATGCATAACACATCACTATAGCC
TCCGGTCACAACCGCAACCCTAGTTCCTCGATGTAGGGCTCGAAATGATTGTGCTCATGG
AACCAAATATACTAGTTTGCCTAAAATGTTGCACCCTTTTGCTCCATGCCATGCATCAGA
TCGATGCTAGTGGCCAACCAGTAACCGCGCGACAACTAGTCCTCCCTCATGTTATACCTT
TGTCCTCTACCATTCTTCTTTGGATCGGCAGCAAAATCATACGGATCAAGGTCGTCGTCA
CCGTGCTCCTGCTGGCTGGTGTACAAATCTGGTTGTTGGGTGTATGTGCTCATCTACAAG
TCCGACTGGGTGTGCGTGCCCGGTTGAATGGATTCCGAGTCATCCACCTACCTATCATCG
TAGCAGCCTCCTCCCCCGCATCCGTCATGGATCATGTCAAACATCTACTTGTCCATGTCG
TCCTATGCCGGCTCACCCGGTTGAGAGATACCGGTGAATAGAGAGTAGGCACCAAGCTGC
TCCTTGCCCGGCGTCCGGATCCGAACAAGTTGTGGTGATGTAGACTCAGATAAAAGGAGT
GGCATCGCATTGACGTCAACGCAGCAATGCACCTGCCCGCCAACGGATGTCGGGGACTAC
TTGCTGAGTAGCTGGGCAACGTAGAAATAGGTAGGCTTGTAGTGATCTAGCCAGTACGAT
GCTTTGCACTAACGGTGATGGCACCGGCGCCCCGCGTCCCTGGCCCCGCGCTACACCGCA
CCCACCCCCTACACGTTTCACGCCAACCGCAACCCCCGTCGCCCTACTTTGTGAGTGGTG
CCGCCTTCTTTACCTTCTGTTCGAGGCAACAGTTCTGCTCGTGTAGATCTTTTGGGTGGC
CGGCTGTGCGGGATCCTCCACCACCATCGTCTCCGCTAGCTTTTTCGTATGGGTCCATGC
GGCAATGGAGGCAAAAAGGGCTAGAATTGGGGTTGAGAGTGGTTGGATGGCATAGGAGAG
GGTTGAGAAGGGTTTTTTGCTGTGGAAATAGTGCAACCAGCTCCCGCGTGGGCTCCGCCT
CAGTTTTGGGTTGGTCGGGGAGTCTGAGAGTCCAACGTGGCTAGTGTTTGGACTCCTGCA
AAGCCCCTGTGGTTTACTTCTGATTTGCAGGAAAACAGACACCCGGAGTCATCTCTGGAC
TGATGCGGGACATCATTGGGTGGCTTGCGGGGTTCGGACCTCTTGGTCCAGACTCATGCG
GGAGGTTTGAAGGTCCACATTGGAGATGCCCTTAGATGTTTCTATGTATTCTATTGTCCA
GCTCATAAGTTCGTTTTCTCCTAATTTTCCATTTACTGTTCCAAGTCATGGCCAAATAAT
AGGGTGAAGTGCTAATGCCAATAACATTAGGCATAGGTTAGCATGCAAACAATGGATAAG
ATATAATCAAATCAGAGAAATTATGTCTAAAACAAACATTCACTGCAAAATGCCACAGCG
CGATGCTACCCTGTGTCGTCCGATCCAGCGGTTATGCAACATGCCTGAGGTCATTATGAT
ATCATGACAGACGTGGCAATTGTTATGGATGTAATAAAGGTCTACATAACTATGAAAACA
ATGCAAGGAGGAACAGACTTAAGATTCTAGGTCTTGGATGGATATCATGTTTAGTGAGAA
AGATCTCTCGCTTCTCCGGAGGCCAAGGAGGAAGCTGACAGGGCTAGCACCAACTGTCTT
CATGTTGTACTTTCTTCCTTTTCCTAATTTTACAGCTCTCCATTGTACAAAAAATTAGAA
TATTTTATTAATTGGTTTACACAAACTTTATAATATACATGAAGCAAGTCCAGAGGAGAT
GAAACCTTAGTAGTTTTGACTTTTGAGCAACCTGTAGTATCCAATTGTTCATGCTTACAA
AGAATTGAACCAAGAGAATAACATCATGATCTTATAGGCTTGGTTGAGATGCTGAGGGAG
CTCTTATTGTATTGAGCAGCATGCTTTAAATCCTACTAAAGGATTTCTTATTCCATTGAT
CGGCACGCTTAAAATGCTGATCAAAGTAATTAGAATCATGGGATAGCTGCTTGCTTGGTG
GTTAGATCGCTTTCAGATTATAGATTCACGTCTAGCAAAGACGCGAAGGGGAAACACTGG
TGTCTAGCTGGATTTGTTATTTTATACTATCAAGCACATCCAGCACCAACTACAAATTCA
TTGTGCAAACTCCCTAGACAAAGTTAACCATGATTTGCACTTACCATGTACGGTATACGC
TGAGCATTTCAGCTTCTCGATCATACAGATGCAAAATACATCGAGCACACATTATCCGGA
TAATTTAACAATGTCAATAACTAGAGATCTATTCACATGCAGACTCTCCACAACAGCTAT
ATCTATCCCTGCATTTGTAGTTGTTCATCAGGACAGAACACAAAAGGGCGGCGAACTGTG
TCGCAATTCCACCTTTATTATGTTGCCTTGCTTGGATTCTGTGTTCATCTGCTCATCACA
ACAAATACAACACAAAAGTCCACATATATACTACATTAAAAACACAAACGATATATTACT
GCTCCACAAGCATCATCAGCAAGGTTTCTTGCAGAAGTAGATTGAAAGGGGGGGGGGTCA
AAGGAGGTGATCACACACTTCCCTCTAGTGAAGTCCTCCTTGTGGTAGTGATTAACACAT
GTGTCTTCCCCACATCAGAGAGGAGTGTAGTGTTAAACATGAAGTATTGGCAAGGTTAGG
TTCGGCCTATCTTGAGTATCAAGGAGTTGTTAGGAGATAGTTATTCAGTTTAACCTGTTG
TATCTTATCTCTATCTATCTCTATCTCCTCCTTGTAAATCAACTCTCACCGATTGATCTC
TATAACAACCGGTGCTCAAGTTGTACCTCAAGCCAAGATCAATATATATACATGTGGGCT
CCCATGTATGGGGGTTAGAGACACTTCATACAACTTTGAATGCCCCCATAAGAAACTGAT
CAGGATCTGATGGTGGTAGTTTTGGACCGAAAGATCCCTACATTAAAACGAACTGCCATG
GCAGTTTTGAAAAATGCCAGCCCCCACTGAAGAAACTGCTAGTTGCGCCGTTCGCAGTTG
CCATCCTAGCCAGGCATTGACGCCCTTTTGTACCGGCTTTAAAAGTCCAATTGAGTCCAA
ACACAATTCAACTTAAATAACTTGGATTTTTATGAAATATTACTGAGCAATATTTATTTT
TTCAATAATGATGCTAGTTCGTTCTTGAACAATATTTCAAATAAGGTTAGGGGCAAACTT
AAACAAGCCCATAATAAGTTTCAATAACTTGAAAAATACAACAACGAATAAGGGAAATCA
ACTGTATTTATTGATTGGCTAATTTTATTTAGCATTCCAAATCTTGAAAAATTTGGACGT
TATAAAAGGCTCGCCTCAAGATCTTATTGCACGTTGCTTCACATCCCGAAGCAACTTGAA
GCAAAATCAGCATGG