morexGenes - Barley RNA-seq Database

Contig contig_78035

Source Contig contig_78035

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_78035 (6001 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location

Predicted Genes from contig_78035

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_77950	3	2386 bp	None	Available	Available	None
MLOC_77951	3	1660 bp	MLOC_77951.3	Available	Available	LOC_Os01g73580.1, FRAME:-1, EVALUE:2e-28, 13101.m08029 protein glycosyl hydrolases, putative, expressed

CDS Structure of MLOC_77950

CDS Structure of MLOC_77951

Contig Sequence (6001 bp)

>contig_78035 6001 assembly3_WGSMorex_rbca.fasta
TATCTAACATAAACAAGAAAAATGTAAATCTGAGGAATTACCGTGTTAAAAGTCACCTAA
ATCTGATATTTCGATAAAAGTTCCACTAAATGGGGTAATATGTGTCACAAATGTACAACT
ACAAGGTAAAAAGCGGAATTCACTCTTTTTATTTAGAAGTGTTTGTGCCTGAGATATTCA
TACCACATGGATCTTTTGTATGGTTGTAGATTTCCAAGGATCGCCGATCGATTATAAAAA
TAAAAATAAAGAATGTCAGTGCCTTGCAATAGATGTAGAATGATCCACGTGGCCAGTTAC
GGAAGGGAAAAGTGTTACGCTTTGCCTAACACTGAGCAAATACGGACAATACGAAAGGGA
AGTGGCATAAATCTTAGCGAGGAGATACATATCACTACTTCTGCAATGCATAACTTTTGT
TTTGCGCAAGCATCCATGGCTATCATCATATTATGGCATTATTACTCAAAATCTAACTGC
AGCATTCAGCAAGAGACTTGCACAAGCAATGAGCTGGCCACCAAATTTTCCCTCTCCACA
AAAGGCAGTTCTGTAATGATACTACTGCCAAAAATATTATGTACTGTACTACATTTTAAC
AAGCATATATTATTTATACATATAAGATTGGGTAGTGTGTTAAACTTGGCTTCTCCACGT
GGGGAAGCTACTAAACAATCAGCTCACATGATTTTTCGTGGACCAAGAACAAAAAAGGCA
CACGAAAGCAGAGTGGCATACACCAAACAGATGATCCAGAAAACATAGATGAAGCCTAAA
GGAAATAAGCAGAGATGAAACCAAACCAGAGACATGATCACATGAACATACCATTGATCC
AGTTCCTGGAAGGCTGGAAGTGGTAGGCAGTCTTGTACCTCATGCTGAAAATAGAGGGGA
CCTCTGGAGACTGTGGAGAGAGGGAGACCTCTGGAGACTGTGGACAGAATGAGACCTCTG
GAGACTGTGGACAGAGGGAGCATCTCCCTCCACTCCCATTGCTGCTGCTGCTGGAGAAGA
GGTTAGATACACAGGAGGAGAGGAAGAATAGGGCAGAGAGGAGGACGAAGGCCCAAGGTA
GCGCCATGGCAACAGAAGGAATGGGAGAGTGGGGAGTGAGTAGAAGAGATCAAAGATTTA
TGGGGGCATGTTGTGACATGTGAAGGCGTTGTCGTTTAAGAAGTTGTTTAGTTAGGTGAC
ACTCAAGAGTCTCTTTCAGATAGATTTTTCTGGGGGACCTCCGGAGAGTGTGGACAGTCT
AGACAAAGGAGGAATCTCCCTCTTTGCTGCTGCAGACGAAGAGGCTGCAAGAGGAGGAGG
AGGGCAGCGGCACTGGCATGGGCTCAAGGTGTTCGTCGCCGTGCTGGAAAGAGGCAGTGC
CCTGGTTTAGAGAGGAAATGGAGGAAATGTCGTGGCAGAGAATGAGCACCGAGGCAGCTG
CGGTGCATGTGGGCGGCACAGCGGCATACAGCGCCGAGTCGGATGGACTTAGCGCCAATG
GCTGAGCCAGGATTGGCTGACGCCTCAGGCGAGAAACTAATGGTCAAAAACACCTAAAAC
CCAATTTGAAGGTATACAAAAGTCGAACTATGTTGCATAGATCCCAAACACAATATTCGA
CGGCAGTATTTGTTCAATGATGGTTCAACTAATAATAAAGTAAAACATATCAAAAAAGAT
ATATAGCATAAATGATACAAAAGATGGTACCAAATCAAATGATTCATTGATCGGAGCTTC
CCATAACCATAAGTACATCTTCAATAGTAGAAGAAGGTAAACCTTCAATGATTTGAAATG
CAAATCGATACATCCTCAATAGATATAATTCGAGGCATGGTATCAATTGTTTGAGCTAAA
GGACCTGCTACCGTGGATCCCGTGGTTTGAACTTGAAAAAAATAATGGCATTGTCTCGTT
TCTCTTACTCATTTTGCCTTCCTGTAAAATTGCATAGAAACAAAAGTTACTAAATTCGTT
TCAGCATTTACAAAAACTGCAGAATTATTACAAGGCTAAGGGAATGAAACAACACTGAAT
TTCAATCGAGGTATCGAACGGTGGCGTTTGCTAGCGGGGTTGAGATGAGCAGCAGGGATA
CCTTTGCTCTGCATGCGAGCTGCTGCGGCGGAATTTGACTGGGCGCCGTCCGCCGGGGTT
GCTCCCCTCCTCAAGACCTGGACTGGACGGACAGGGCGATCGCCGCCTCGCCGGGGCTGC
GGAGGAAGCCGTCAACCAAGATTTCAATCCAAGAAGGGGAGGAAGGGGAAGATTGGACTG
CCCTCTGCCGCGCGGGGCTGGCCGGCTGGGCATGGCGAACGAATAGTGGGGCGGCCGGCC
GGAAAGCGGCAGCCCACGCAGGGTAGGGTTCTTTTCTTGCTCGTCGGAGTACTCGCGCAG
GCGCAGCCGCACGGTCCTCGGCGGAACGGAGCCGAGGCGGAGCAGCATGAGCGGCATCGC
GTGCCTGGCGGCGAGCGCCTCGAGAGCTGTGGTGGCCGGGCGTGGGCACACTGGGCTTAA
GGTGTTCGACGGAATGCCGCACTTAGGTAATACCGACTTGAACCGGCTTATCGCAAAAAC
CACCATGATAAAATCATTAGGATGAACAGTCACTTCAAGAGCCCGACTTTACATTAAAAA
ATTCATTAACTGATTAAGATTACAACCAAAAAGTACGGCAATGGAGCAGTGAGCAATGAA
AAAAGAAAAGCCAAGAACCAAAAGTTACAAGGATGTAACAAAAAAACTTACAACACAACC
AACTCAACAAGCACTCAAACCGAAAGTAAGTTGTGTCACTCAAAGATGGATAGCCCTTCG
CACTTGGTCACCGAACCGGAAGACAAATACACCACAAAACGAACAGCCAGCTATCTAAAG
AACGTTACTATCGATGCAATGCCTTAGGAACCACGAAGATCCCACACCTTCTTTCTCCCT
CACCGAAGAGGGACCCTACCCGCTCCTTTGGGTTTCAAGGACGTCACATCGTCACACGAA
GGAGTCGTTCACCCTGAATATACGAAATGCATGGTCTTAAAGCCACCAAGGCAAAACAAC
TCCACGTTGCTCCCTTGCCACGGCGGGCAGATCTTGACAGCTACAATGTTGTTGCCCGTT
GATGACCAGTCAAGAAAAGATATTGAAACCAAAGGAATGAAGAGCTCAAGGAAAACTGAC
AAGCATACAGAGGAAGTGTTATAGCCGCTAAGAAGGCTCGGGGACTTGATGAACCACCGT
GGCGATGATGTCGGGGAAGGGATCTTGTGCAAGATCGAGGGTGACGAACCACCGCACAAT
GGAAGGGCGCCCACACGCAAGCACTAAAACAGAGTATAGCATATCAGAGGGAAGATGGGC
CACCGACCTTTAGATATGATGCGAGAGACCATTGTCGTAGCCCACGAACCACCCACCACA
CTCGCCGGCCCGCATCACAGACACCCTTCCGCTCAGATGATATCGCCTCCCCACCCGCTA
TTGCCGCCTCGGCGCCCAAAGTCCCTCCGCCTAAGTAAGGGAGCAACAACCCTCATCGGC
GGCTGTGTAAGCAGACCCAGGGACTGCCTCCGGCGATGATGAGGGAAAAAAGGGAAGGGA
GCGGATACCCTAGTCACCCTTGAATTACCCCACATAGGGACGATGCAAGGGTCAAATGTT
TCTTTTTCATTGAACTTCCTACCATGAAAGACTAGTCACAACTCAGCAGGACACCTCAGC
TCGGCGAGGGGTATATGACAGTTGGGACTGACTATGTAGCGGCGCCGCACATAGGTTTTC
CCATGCGACGGCCTCTACCATCCCATAAAATGCATGTTTTGACGCGTGTTTTATCTTCTT
CTGTCAGGCAGCAGCGCATGCATCAAAACATATTGACAAAAACGGTACATGTGTGCATGA
ATAATATAAAAAAGAGAAGATTACATGTAGCAGCGCTAGCTACAATAGTAGTAGCACTAT
CCATGCTTACTAAAAGAGTATAACACCGGCTCTAGGTACATGCATCAGGTGACATTTGTT
GTCAGGTTGAAAAAATAGTTCCAAAAATCCAATTAATTAGTTCTCAGATTGCAAGTAATT
AGTTCTCCCGACTTCAGTTTACAAATACTTAATTGTCGTAGCACAAAAACATGCTTAATC
ACCACATTACAACTTCTTAGCTGCCAGATTAAAAAAAGTGATTGCCGAATTACAAATACT
TTGTTGCCATATTAACTGCATAAAAGTGTATATGTGGCGTCCGTTGAAATGCATTACCCG
CGTCAGAAAAATCCTACTATCTGCTGAGCAGATTGGCTAAGCATCCATGAGTCCCTGATT
GCCCAACTGATCCACCTTTTTTGTGTACTCTTGCTTTTTACTCTTGTGATGCTGCTTCAC
ATCCCGGCTGCGAAGGACAAAAGGGAAAAACAAAGAAGAAGAAATGCATTGGTGGAGGAA
AAACAAAAAGTAGTTACCAAAACCTGGATTTGCTATACTTATCTAACGTACTTGTCAGAT
TAATTGTGATGAATTGCCTGATTTAGTTGCCAAGCTTGCCATGCTTGGATTTTTGGTACG
TACATCATTGCCTAGTTGTCCAATTACATCCCCCTAGTTGTCAAATTACCTGTGTTAGAC
AACCACAAAAAAGATGCAAAAGGTTGTATCAAGTTGCGGCACTTGTCGTGCTAGAGATAT
GCTGTGTTCAACTCACATCTAGTTGTCAAATTAGATGTACGTGATTGCCAAATTAGTTTC
ACCAAGATGCCAAAAAAGAACTTCCGAGCTTGCCATGCTAGAGGGGCGTCCGTCGGATGG
ATCCGTGGCCGTGGCACCTCACCGGAAACCGCGCAACACCAACCGCGACGAAGGGCGGAT
CCCCCTATGAATCCCCGCCCCACCCCTGTGCAGCCGACGACCAGATCGACCCCGCCCAAC
CCACCATCCCCGCAAGGGGAACAAGAGAGTGGACTCACCGGAGTTGCCGGGCGCCGGCGC
CGGCGCGGATCCACCCTTCGTCGCGCCGGATTGAGCTCGCGAGATCTGCCCTTCGTCGCA
CGGGATTGAGCTCGTGGGATCCGCCTTCGTCGTGTCGGATTGAGCTCGCGAGATCTGCCC
TTCGTCGCACGGGATTGAGCTCCCGGGACCCGCCTTCGTCGCGCGGGATTAAGCTCACAG
GCAGGCGTGGGAGAGGAATGGGCGTGGGAGGGAAACGGAGGAAATCGTCGCTAGTAAAAA
AGAAATGTTGAAATTTGAACAGTAACCGGTGGGCGGTCGCACGCATGCAGCCGCACGATT
CATCACCCCGCACGGGGAGTCCGCGGAGCGGCGCCTCTGGTTAGATTTTCCCATGACAGT
TTTGCTCACAGAGTTTTGTAGCCACTTCAAAACATTTCAAGAGATTCTTATGTGTGACTA
AAGTACTCATCCCGTGAATTTTATGACTAGTGTGCGTTTCTATAAAAATTGGTACAAGTA
ATTGAATTGGTACAAGTAATTGAGATGGGAAGGGCTTACTAAGTAGTAACTACAATATAT
GAATACTAGAGATCATCAAAGAAATGACAGGCTATTTTTTCCTGCTGAATGTCCTTATTT
CTGCCAGGCAATGCTCATGAATGATAGTAAAAGAATCGAGAAAATCGAATTGCTCCTCTG
CTTTAAATAGCACTCCAACCCTTCTCCACATTCACTTGTGCCTTCCTCATGGTCCATGCG
CTGAGCTGTGGCACCCTGACCATGGCATTTCCGTTGTTGAAAGCGTAAATGTGTGCCCTG
CCGACGTTGGCGAGCACCGCCGGATAAACTCTGGATGTGATGCAAACCCTACCCCCGCCA
CCGAAGCTCTCCACCGCCGACCGGTCAATCTGCAAGGCAGCATCCAGCCATCCATTTTCA
GTTCTGACATGTAGGAAATGAATAACAGGAGAAATGGCAGAGCCTCCCAGCTTACCAGGG
TTCTGAGTGATATCTTCCTTTCCTTTGCAAGATCAAATTCAAAGAATCGTATAACTTCGT
A