morexGenes - Barley RNA-seq Database

Contig contig_77656

Source Contig contig_77656

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_77656 (4814 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_77656

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_77863	1	265 bp	None	Not available	Available	None
MLOC_77864	4	329 bp	None	Available	Available	None

CDS Structure of MLOC_77863

CDS Structure of MLOC_77864

Contig Sequence (4814 bp)

>contig_77656 4814 assembly3_WGSMorex_rbca.fasta
CTTCATGGTCAGTGATGTGTCTAGCTTCTAGTGCTTGCAGTTCATTTGAGATGTCAGTGA
GGTGATCAAAGGTATCTCGGCATCTTTCATTGTCAAGCCTCTTGNNNNNNNNNNAGAGAT
TGCGAAGAACATCGACACGCGAGTTACACTGTATTGAGACTCCCTCATTGACTTTGGATA
GCCTATCCCAACTAAGCTTAGCTGTGCCCAAAAGCACTCACTCTGCCATACTGACCTTTG
CTCAGAAGGCCACAGATGATATTCTTCGCTTNNNNNNNNNNNNNNTTGAACTTCTTCACA
TCAGCGGCATAGATAGTAGCAGTGATGGAGGGTATAACAATTTCCACAATATACCAGAGA
TCATTGTAATTAGCTTGAAGATGCATTTGCATCTTTGTCTTCCAGTACGGGAAGTCCTTT
CCTTCAAAGGTAGGACATCCTGCAGTAACGTTGATCATACCTGCGGTCGACATAACTAAA
ACTCCATGCGGTTAAACCAAAATCACACAGAAGAAGGGAGTACGTTGCTCTGATACCAAT
TGAAAGTGCGTTGTATCGACTAGNNNNNGGTGAATAGGCGATTTTTAGAATTACATCACT
GAGGAAATTCCTTGTTAGGAAAGTCCTCAATCATGAACTGAGTGCAGCGGAAATAGTACA
AGATTAGGACACTACAGGAATCGGGAATTTTGCCGTCAGGACGCTATAGATGGCAAAGAA
AGAATTACAGACGACAATTTTTTTGTCGTCATCCCATGACGGCAAACAATGTTGCCATCC
ACCATGCCAGCGAAGAGGTATTTTGCCGCCAGTCTTTGGTCGGGCAGACGGCAAAGAATT
TGCCATCAGTCAGAAACTTTTGACGTCAGCAGTAATAGGAAAACAACAAAAATATGGTGT
CTAACCGAACGACGCGAATGACTAACGTCGTTAGTGACTTTGCCATCAACTGACTGAAAT
GACTAACGGCAAACATGGCTTCTTTGCCATCAGCCGGATACCAAACCAGATGGCAAACCA
AGAGGTCCCTTTGCCGTCAGCCGCTACAAAACAGACGACAAAGTAGTGACGCATAACTAG
GGAACACAGTTGCTTGGCACGTGGCTGCTTCGGCTGACAGCAAAATTCTGCATGTTTTTG
TTTACAAATCTTAATTTTAACAGTTTAATGCACAATGTATAACAGATATAGAACAAAATT
ATCAAAATGATAAGTATCTACAGACATGAAACACTGTACATATGAAGCGTTGGAAGAAAT
ACATGTATGTTCATAAATTCACTTGATAAAGATATCATGGGAGCAATGACTACCAATTCA
AGCAACAACAAAACTTGAAACATGTGCACCCAGCAACCATGATGGTTGTTCCTCTGCACC
ACAAATCCATAAATAGCAACACCAACACTACCTAATCTAGCTAAGCTCACAAATTCAACC
GCCAGAGTCGCTGACGACAACGCCCGATCTCTTCTTTGGCAAGGAACATTCTATTGAGTC
TGAAATGCCAATACAGCAGCAACCCAATTTCAACCAAGCTCCATCCATCTGTAATCTCGC
CTTCCCTCCAGAGGATTGAACGAAATCAAAGGTGTTTGCAAGTCCACCATCTCCTCTCCT
GTAAACAACCACGACTTGCAGCCTTTTATTTTCTTTCTATACATATGATCTCCTCTCCTG
TATTATTATTCAAAGAACCAAGTCAAGCTTCTCCAGTCAATAACAGTAAACAAACAAAGG
TGATGCCTAAAAAGTGAGAAATCTCCAGTTCTAGACTTTGGGAGTTATCTTCTCCTGTGA
AGAGTGCAAGCATTTTTTTCTTGTCGGAAGATGAACGGCTTACGATTCCACAAGTAACTA
ACGACGGTTCAGAATTACGACAGTCCACATCCCAGAAATAAGCAAAGTACCAAACTGACA
ACACCAGTAGATGCTAGATAACACAATTACTACACCTCCGTCCGTAATTGCTTGACGCTC
AAACGGATGTATCTAGCACTACCTGTTTGAGCGTCGAGTAATTCCGGGCNNNNGGAGTAG
ATAGATAACTATTAAACAGTGAAGGAACTACCATGAGAGGTAAATATTATGAAGACAATT
GACCTTGAAAATCTGAGAGATAGCAAGAGAGAGCAACCTGCAACACCCATGTTGGGTTGT
ACGTGATGGTCAAAGGAGTTGTGCGACAAAGTAGGCGACCACATCCAGCGCCACTGGTAG
CTAGTCAGAAGAAATAATAATTAGGATAAGAGGTTCATCACAATTTCTCATTGTCGTATC
AGTAAATTAGATACGGCAAAAAGACAGGTTAATGATCATTAAAGTCCGGTAAATACACTA
TCTGAACAGGTTATTGATTTGGATTCGTAAATTGTGAGTCACCCCCCAACAAAAGACTTG
TAAGAATTAAACACAGAAAATGCTGATTAAATAAAATATAGACAACCCTCTAAAAGTTTA
GATTGCACATAAGTATTTCAGCAAGTGACCTAGCAGGCTAACGTTACAAATTTCTGATTA
GATAAACTAGTCGCCAACCCGTGCGACCTGCACGGGCTAGTTACTTGGTTTAAATGAGGA
ATTATATTGGATATACAAAGAGATCTTATATATAAATATTGATAAAAGATGGAACCTTTT
TTTTGTATTAGACCCATGTGGTACATAATTCTTTATGATCCATTAGTTCCAAAATTACAT
AACACACATACTTACATGGCAAAACTATGATTGATTTTGCGAAGGCAAGTGCGCAACGCC
CATTTTAGGTCCTCCTAGGGAGACTACAATCTCGATATATTGTTTCAAGGTACTTACTCA
CACAATTCCCAAACCCAGTCTGCGTAACTGAACATTTATTTAGGACTTATCAAAAAAACT
TTTGTTGTCCAAAATGAAAACTTACTTTACAAACTAAAAGATAAGTGATACTTAACCGAA
TAGAATAGTACGCTTTTTGACACCACATCAAGGGAACAATCACTTGAACGACATCTTTCT
CACTGAATAATCTTGGAATAATAAATTTTGTGTTAATATTCACAAAGTCATAAACATAAA
GTAAAAAATAATAACGCTAAATACAGATTAGGAGAAGACGGGCAATATCTATCTTACTTA
TCGGTGTTTCATATTACATTATTGTCGTGAGAAGTTCAAAAGGCATTGAAATCCCCTCAG
CTGACCTCAGTTGAAGTCACTAAATGCATTTGCGGTAACATCTTTCTCAATCATCCAGTA
CAATGAGACAAGGAAACAGAACACGGATGCAAATAATAGTGGCAGCAATACAAATTGATG
TCAGTTTAAAAAAAAGAATCAAGTGAAAAACAAGCTAAGGCACATGCGATGCGCTTTTTT
TGGTGGCAAAAAATCTTACTTTATTTTGTAGTAGAAGAATGCATATAAAAATCAAGCAAA
TAGTTTTCTTTTTGTGATGAGATTCTCGTGCAAATCATGTAATAGAAAGCCTTGGTTTCC
GACTTCTATTTTAACGTCACAGTTATCTTATAATAACCAATTCACCATTTATGGGACGTG
TAACAAACCTACTCAGGACTGAGCGTTTGATGATATCCCTTTTCCATGCGAAGTTATCTG
AAGTCCTGAAGAAAATACAGTATGCAAGAATGAGCTATAGAAACAATTCTAAAATCATTG
ACGTTAGCAAGAGCAGCAACCTTAAAAAAATGACCCCATATATACAGCATGTGGAGAGCT
CGTTCGGCAAGAATCACATAGAAAAATAGCTTGCGAGTCATTTACTCGATTATATATCGA
GAGTGAACTTTACTTCTAAAACTAACATAAAAAATCACCTTGTTTCCCTTTGTCATGTAT
CCATGAATGTCGTCGCTTGACAACCACATATATCCATTAACTCGATCATATTTTCAGAAT
TGTATATATCAAGTTTCAAACACCAATCAATTTCTGAACTTCAAGTAGTGAGATAGGCAC
TTAGAACAGGCACTCGTTCCTTCGCTCGTTCGGCAAGAAACACATATAAAAACAGCAAGC
AAGCCATTTAATGGATTATACTTCGAGAGTGAACCTGACTTCTATAATTAACATTAAAAA
ATCACTTTGTTTTCCTTTTTTTCTGCATCCATCAATGTCGCTTGGCAACCAAAAATATCG
ATTAACTCATTCATACTTTCAGAACTTTATATCTCAAGTTTCAGACACCTATCAGTTTCT
GAACTTCAATTGATGCCATAGAAAATTAGAACAGACACTAGTTGTGAACCAAATTGGATA
AACTTTTGCACAAAAATCAGAAATATGTATGCATAACATTACATTTACCTATTGAAACTG
GTCTTTGGGCCGAATCTTCAAAAAAAAGGTAACAAAAAACTTCTATGCGTAGGGGAAGTG
ATATATATTCTAAATTATCCATGTAGTATCCAACACCTCATGATCCATGTAGTATCCAAC
ACCTCATGGATCTAGTGGATATGCCTGCAGCACGAACATGAAAAGATTAACAGGGCGTGA
GGAGAACGAACCAAATCCTAGGGAGAGGAGGGATGGGAGTGGGGAGGCATCTTGATCCGT
GGAGAGGAAAATAAGCACGCACTCCATCACAGATACATGGAGAGGAGACCTCCGTCAACG
ACGTCCATCGTCGGCCAGCCGGGACCTCTGACCACAAACCCTAACCCTAACAGAGAGGGA
ACGATGAGGGGAGAACAACATGGACTGTTGGATCCGCGGCCTGGGTAGGGAGGAAGGCGA
GGGGAGGTGGAGGGGAGGGGGAGAGGGTGGGTGGCCGACGGTGGGTGGGGGCGGAGCCTT
GTGGCAGCGGTGGG