Contig Data
morexGenes
Links



Map Locations of contig_77497 (5798 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_77497

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_77839 1 155 bp None Available Available None
MLOC_77838 4 2127 bp AK374944 Available Available None





CDS Structure of MLOC_77839






CDS Structure of MLOC_77838






Contig Sequence (5798 bp)

>contig_77497 5798 assembly3_WGSMorex_rbca.fasta
GCCAGGAGGCCGCTAGGTCCGGGAACTGGGCGGTGCACCCTGCAGCCGCCGATCGGGACG
AGCGCGGAGGCGACCAACGCGGGCACTTCTCTGCTTCCTCGACCTCCAAGGAAGAACTAT
GTGAGCGCTAGATGTGTTTTATCTCAACGGAACAGTTATGTTTATACATGTATCAGTAGG
TTCAGGTTTTTAGTGTCTGGATTGTGTTCTAGTCGACAACTGATGCTAGTCAAATTATGC
GTGTCACATATGTTTGATATCCGAAGTTTATGTCATAGATAAAGATGGGATGGTATCTTA
CAAGTCTGTTCTTATTTTGTACAGGACAAGGCTATCAAGCGTTTCTTGGTGAGGAACATC
GTGGAGCAGGCTGCTGTCAGATATGTGCAGGAGGCTTGTTTGCATGATGGTACAATATCT
CTTGTTTATTGTTACACTTGTACATGCCAGTTTTTATTTATCACTAGTAACTACATACTG
TAAACACCTCATATATGTGCTCTTGTGTCCAGGATATGTTCTTCCCAAGCTGTATGCCAA
GGTGCACCATTGTGTTTCTTGTGCCATCCATGCTCACATTGTCTGTGTCTGCCCCCGTGA
GAACAAGAGGAACCGTGAGCCCCGCAGCGCTTCAAGCGCAGGGTGTGATTTTAAGAACCT
ATATGCTCGCTTTGCTTGCAAATAAGTGTTGAGGTTTTCTTGTATGTTGTTCCGATTTTA
ATTGTTAGATAGAAGTTTGAGGTTCATAATGAGTAGTACACCATGGCTAGTTCTTCACTT
TTTTAGTGTTGCTTTTGGCGTTGCATTCTCTGTGTACATGTCATAATGGATGCGTCAATG
GAAGCATAAATAAACATTTCTGGGTGTATTGCAGGCTTATGTGTGATGGTTGAACCCTAA
TTCAGTCATAACTTCCGCATTGCACTCATGTGAAACAAATTTTCTTCATTGTCCTTGTTT
TGCTTCTGGCGTTGCATTCTGTGTGTATATGTTGCAATGGATGTGTCAACGGAAGCATAA
ATAGACATGTCTTCGCATTGCAGACTTATCTGTGATTACTGATTTGCTAATTCAGTCATA
ACCTCCTCATTGCACTCATTTCTGAAATGCACACATTCCATTTTGATCAGTTGGTGATGT
GATAGCAACTCACATTTACTTTCTTATGTAGTTTTATCTACTTGGTTGTTATTCTCTTAA
ATTCAACAAATTGTGGGACTTCTTGTCTACCCCATTTGCAATAACAATTGCCTATGGGAT
GAAGCAGTCTCTTACATCTGATAACCATCCTCTTCACTTTGTGTGCTAAAACCTTTTGTT
TTTAGTTGGTCATTAACGGATGGGACATTTATATATACATCTCCCTCACTTTGTCTGCTA
AGATGTTCTATTTCTAGCTGATTGTTTGTGGACGTGATATTTCATGACTACTGATGTTTC
TTAGTTCTTCCTCGATGATTCATTCAGCTATGTGTCCCATCTCCAGCCTTCTGATGTTGC
TGCTGGCGTGTCATTTACATCATGTAGAGCAAGCTGAGCGAAACATGACGTGGATGTATC
ATGCGCTAGACCAGCTCTAATTTAAAACTACGCATCACCGTTAAATTTTTTTTTTTAGAT
AAACCAACAGACATAACTTGTCAGATAGTAAGATTTTACCTCAGATTTTTAGAGATAGCC
CCTTTTGGTTGGTTGTCTATCTCGCGTGTGCTTTAGAGATAGCCCCTTCTGGTTGGCCCC
AGATTCAAATCCCCCATAGCTCATTCTTTAATACCCTTCATCCCACTAACAAAGTGGTCC
ACAACAGGCAAGAGACAGATTGTGTGCAGCAGTTGTAGTTTATGGAGTTGTTGCTTATTT
GGTCCGAATTCTTTTCCTTATGCATAAGAATAAGCTAATAAAAACAGAATATTGATTCTC
TGCGTGTTATGAGTAAAATGCTATATTTTCTTTCGTCACCTTGTATGAATATCTCATTTT
AACTAGCTAGAGAACATCATTGTACTAGCAGAATTTGTGTTATCATTCTAAAGAACTTGT
TGTTCATTTTCTGAATGGTTTGTTCATAATATATTTACTCCAGTTTTTTTGGTTCCTCTG
TGTTGATTCATGTAACAGGGCCACCGTGGAAGCCTATGGAAGGTTGTTTCATATGACTAG
AGTAGGAGCCCAGTTTGCACCAATCGTCATTTTATCTGTGTAACTCTATGTAACTGATTG
TATTTGTATGTGTGTCATATGACTATAGCAGGAGCTGATTATACACTTGTAGAGCTTGTA
ACTTCGATTGTCATCGTAACTCTTTATATTATGTAACAGAATGATTCTGGCTACTGTTAT
ATGAAGTATTACTTATGTTTGCTGTCTGTGTTGATTTAAATATTGCATATTTATATATGG
TCAAATTATAATCAGAAGAAAAAGACACTCACATAAAGGGCACACTTATTAGAACCTTGG
TCCCATCTGATAGTGGACCCTTTTGAAAAAAGAAAAACTAAAACTGCTAAGCCAAAAAGG
CCAAGGCCCAAAAATAAGAAGGCTAATTGTTAGGCTTGGCCCATCTAGGTGAGATAAATT
TCATAGAAAAAATCCAAGTAGTTTGAATTGTTGGGCTAGGCCCATATAGATGGTTGAACT
GGACCGGGCTGATTTTTATCAATGACCAATCTAATTAGTCGTAACTTTGCCACGTCACCT
TGCCATTGGATCCAACGTGGCATGGGCAGACAACCAGTGACCAAAACANNNNNTCGTAGA
ACCAACGACCTTTTGTTTGGTCGTAAATGTCTTCGACCATTCGAAAATAAAGGTCGTTCT
AGTTCATTAGAGACAATCAGCTTTTGACCATCTGTTTTTGGCCGTAAAAAGGTCGCAAAT
GGAAATCAACGACCATTCGGAGACTAATATTGAAGGTCGCAAGTTAGCATATTTCATGTA
GTGTTTTTAGGGAAGCTTGTGGCTAGTTTGCAATGGATGAGTTGGAGCATCACTGTAGGG
TTAAATCTTTCTGATAGTCGTGCCCGCGATTATGTGGCAACTTGGAAATTTGTTCAACCA
TGACCATCCTTCTTTTGAGGTAAACTCAAATAAACTACACCAACTATGTGCGTAACCGTG
ATCATATCTTCTTGTGAGGTTTGAACCAAGAAGGGAACATGGTGGGGGTAATGTTTGATT
CGTAAGTAGGTGTCGAAGATCACTTTGTGATCATTTCTAGTTCACGTCCATTAATGCGTA
GATCACTTTTCTTGTTCTCGTACACGTAAGTTAGCCACTCAAATTAAATGCTTAGTGTTT
GTTGCAGACTCACCACTTAACCATGCCTNNNNCATTAAGCTTTGCTAGTCTTCATACACT
TGGAAATAACATTGCAGAGTCCCTATGGCTCACAGCTTCAACAACATAGGTACAGGTAAA
GCGATACTTTGACGTGAGTGTAACAGCCCGAGACCGACGCTNNNGAAGATTCCCCTTTTA
TTCCATCATTATCGCCTTGTGATTAGATTGTTTGTCGCATTCNTCATCGCATCATTCGCA
TCATCCTCATTGCATCGGCACTCTGTTGCCGCCAATTTTCAAANNNNNNNNNNNNNNNNN
GTTGCCGGTTCTCTCCGTTTTTTCATTGACCGTTTTCATACCAACCGCACACACACGCGC
CCGCGACATCGTTTAATCTTATTTTTAAAAGTGTGAATGAAACTTTCTCGGATTGGATTG
AAACTTGGNNNNNNGTCTTATTTTAATGTAGGTAGGCGGCTTGCTAAATTTCACCGCAAT
CGAAGTTCGTTCCGTACCGAACCGTTAAACCGATAGCGGCACTATAACCGGTCAAACTTG
AGACGTTTCAGTATTTTTTAACACTGTCGCCAGGCTAACCGTTTTCCCTCTCATCTCCAC
CTAGCCTATTCTACACAGCCCAACACCACCCACCTAGCCTACCCCTCCGTGTCGGGCCGT
TCGATCGAGATCCGACAGCCCGAAAATGCTGCAAACCCCCAAACCCTAGCCTCCCTGCTA
TATATAGACAAGCCCCCTCCTAGATTTGGTCTTCTCCCACCTCCAACCTAGGTTTGTGCG
CCCCCAGTAAACCATAGCCACTTGGCACGCCACCGCCGCATGCAGCCAATCCTAGCGCAC
CACATGTCGCCCTAGTGCCCCCAGCCGTCGTGGCCCGCTCGACACGTAGCAGACCCGCTC
GGTCCCGAGCGCATCTGCCTCTGCCCACACCCCGCAACCAGCCGAGTTGGGATCGAGGGG
AGGAGCCCCTCGAGCGCCCAACCCCACTCCCCGCGACTGCGCCTGCGCCTGCTATCTGCC
AGCCGGCCACTGGAAAGCCACCCCTCATCGGAGATGGGTGCCCTTGCCATGTGTCTTCTC
TCCCCGTCTTCATCTCTCTCCCTTCCTCACCTCAAGCTCTCTCTCTCTCTCTCGTGCAGG
TCCACCCTGCAATGGCCGCCGTTGAGATCGCCTCTGCGCCTCTCCGTGTCCCGTCTCCAG
CCAGATCCGGGATGGAGCTGCCGGATCTGCCAGTTCCCATGCTCCTCTGGCCGCCCTCAC
CCCATCCAGCCCCGTCGCCCGGTTGCCGCCGCATTTGAGCATCTCCATGGCCGACGGGAT
CCCTTTCCGTGTCAACATCGTTTCTGAATCGTGTTTGTTCCTAGATGTGTTTCTGTTGCG
TAGAGGTAATATATATTTGTCACTGACTTTAATCACGAGTTCAACGCTAGCTGAGTTGGC
TAGCGCAGTCGATCCCATCTCCCAGCAGGTCGAGGGTTCAAATCCCCGTGAGTGCATGTT
TTTGATATGCAGTTTTTTTTCCTCTTGAGGGTAAACTCCATCCTTTATTTTAGTTCCTCT
CAAGCCAATATTATTTGGCAAACCACTAGCTAGCCCAACAGGTCAATGCGCTCGCCCACC
TCGAGTAGGTTCTGGGTTCGAGTATGAGGAGCATCATTTAATTTTGGCGTTTATTTTTTT
CTATACCTTACAGGTGGGACACCTCTATTATACACATGCATGTCCACTTGGGCTTGTTTC
CACTCCTGGGCCGCTACAAGCTGTTGCAATTCGGCCCAGAGCGTTTTTTTAGTTTTGTGA
ATTTGTCTAATTAGCCCCGGATTTTAAAATCGCAGATTATGTGCATATTTTAAACCGCCC
GTAGTTTTTAAACCGTGTGTCGGATCGCGACAAATTATATATGTAAAACGTGTATAGTTT
CGCGTTGATTAATATTCTCCAACTCTCATGCATATTTAGATCTATTACCGGTGCTGTTCG
CATTGGTTGTGTGTCGACGTGATAGAAACGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTGAGCCATATATGTAAATGAACTAGAACGACGGGTAGAATCACGGGAACCA
CTCTATTTTCCTGTTTAACAAACATAAAAGGTGATTAGGAAAAATCTGGACAGATTTAGA
GTTAACGTGTGGGGTCATTTCGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGC
CTATATAGGTAGTTTAATTTGTGCTTCACCCCTTGCCATATCAACAACATTTTAATATTG
TCATTATGTTAACCAGGAGTGAACTAAATAATTAAATGTGGAGTCTCGTCCATATGCAAT
TCGTTGCATATTGAGCTCCACTTAATGTGTAACGTTTGACCATGTGAAATGCCATGCCAT
GCCTTGCATATTTNNNNNNNNNNNNGCATCATATGTGAATTGCATCATGACGTGCATGTG
CCGTGGCGAATATCTATGTTGATTCTTGTTTCCGGTTT