morexGenes - Barley RNA-seq Database

Contig contig_7733

Source Contig contig_7733

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_7733 (2766 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_7733

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_77803	1	671 bp	AK364756	Not available	Available	None
MLOC_77802	1	994 bp	AK364756	Available	Available	None

CDS Structure of MLOC_77803

CDS Structure of MLOC_77802

Contig Sequence (2766 bp)

>contig_7733 2766 assembly3_WGSMorex_rbca.fasta
GCGCCCGCAAAAATATTTACGGCGGGTCGGGACGGGATGTGGGGTCTCCTAGAGTTGCTT
TAAGGAAAACCAAGTGAACATATATACCCCTTGGAGATTAGACCGGCCTTCAGTTATAGA
TTAGACCGGCCTTCAGTCAAACTGGCCAAATTTGTACTGGTTGAATATATATACGAACAA
CAATGTATACATCAGACGATCAAAACAAATACAAAATTGCGCTTGCGCCTCTCTCCCTTG
GAGTGTCCATGTCTGAATATGCAACACCCCGGCCATATTTCTCTTTCAATCCACAGGACA
AATCTGACGACGATCCCCGTCGAGCTGCGCGCAGGAGTAATGGCTTCCACGCGCAAGTAC
ACGGCCGGCCGCCCCGCCCGAGCGATGATGCTTGTACCTTAGAGGGAGTTTGCTCTCGTA
GCTCTCCGATCACCGGACCTCGGACCACTTGTCCATGCGTGTGCTCGCGACCATGGCCTG
CCAGTGACATCCAAGTCAAAAAAAGTATGAGCAGTCAGCAGTCAGCACTACTAGCACCCA
GCTACACGCAAAACCCCCCAATTTTCAACCGGCTCGCTCACTCTCACTCACCTCCTTTTC
CCAGTCGCAGCGAATGGTCATGATGGCCAGGATCAGCGTCTGGACGGCGGTTCCGCCGAT
CATCCCCGCCCAGATCCCCTGCGAAAGATTTCGCACCACAAAAGTCGTCAGTGCGCGCGG
CGCCGAGACCGAAGCGTAGAAGCAAGCATGGCAACAACCAAGCTTGAAAGCTCTACCGTA
GGAGGCTAGCACGTACCAGGACGCCAAGGTTGAAGAGCCACCCGAGGAGGACACCCATGG
GGACGCCGATGAAGTAGTAGCTTCCGATGTTGACGTAGGCCACCGCGGATTGCCAGCCGG
ATCCAACAGCCACACCTGCGTTTGTGCCAGCAATATAGCATGCCCATGATGAGTAAATTC
TGCTCCTGGCACAAGGATCGGGCCCAAATGATGGAGGAGGTTTTGCTCGGGGCCTGGGTG
GGTAGCTAGGGGTACCTGAGAGCACGGGCTGGATGCTGTTGAGCAGGATGGTGAAGGCCA
GCAGGATGGCGAGGTTGTTGACGGCGTCCAGCACGACGGCGCTGGACGTGAAGATGAGCG
CCAGCTTGTCGTGGAGGCCCATGATCAGCACCCAGAAGAAGAGCCCGATCACCAGCGACG
TCAAGGACGACACGATCGTCGCGAACCGGGCCCCCTTCCCGTTCCCGGCGCCCAGCTCGT
TCGCCACCCGCACTCTGCAAATCACGCAGCCAAACGTACTTCAATTAGCATGCTCGACTC
TGTTGTTCAATCAATTAGCATAAACAGGTACACGAAAATGAAATGTGCCAAGCACGATGG
TGGTGCGTGCTTACCCAGTGCCCGCGAAGAACGCCAAGGGAATCATCATCTCCCATGCGT
TAATGGTCATGCTGTCCACAGTAAACAAAAGGAAAATATTTGCATTGTCAGTCACTGTTA
TTCTGCATAATCGACGAAGGCTAGTACGAACACGATGGAGGAATAATTACCAGATGGAGA
GCGCATCCACCGCAATAGCCGCGTCCTTGAGGTTCCCTGTCAGCAAGATGAGCACCCTGT
AGTACCAGTTCTCCAAGCTGCACAAGAACCAAAATTTGTCAGTCCATACGGATGAAATGT
TATTTGTATGCAGGTTTGATGCCCGATTGACTTTCTTCACATGGTACGGGCGGGCATCAA
TCAGAAAAAAAAAAGTAACACAATGCGAGCAGCATATGTCAGTAGATCAGTAGAAGTCCA
CTCAAAAAATGTATAAAATGTACATACAGTACTCTAAGTACATACGATAGAGTCGTATAG
AAAATGTATAAAAGTAAGTACTCCCTCCGTTTTAAATATAAGTTCTTTTACATACTTATG
TATATATAAACATGCTTTAGAGTGTATATTGATTCATATTACTTTGTATGTAGTTCGTAA
TGAAATCTTTATAAAGACTTGTATTTAGAAAGTAATGGGAGTGATCAGTATAGAAGAAGT
ACGCACCATAGCATGACGCCCGACGCGGCGGAGAGCTTGACGAACTCCCAAATGTCGGCG
AACGCCTCGACGGAGAAGCCGTGCCAGGTGTCCGGGCAGCCGCCGCAGGCGACGTAGGCG
AAGAGCATGGCGAAGGTGGCCCACCAGGAGAAGTTGAGGGTGAGGGCGATGCCGACGAGG
CCGAAGCGGAGCCTGGTGATGAAGAGCCAGCTGACGAGGAGGTGGACGCAGAGCGCCACC
CCGGAGGCGGCGGCGCTGACGAAGTTCTTCATCTGGCACTGCAGGAAGCGCTGCAGCGGG
AAGAGGAGGGCGAAGGAGAAGTGGAGCGGGATGAACCAGACGGACACCCTGCCGGCCATG
GCCGACAGCTCCGGCGACTGGCCCGTGAGCAGCAGCACGTCCTCGGCGAAGAAGTACATG
GGGAGGAGCAGCACCGCGCAGCCGAGCAGCACGATCCAGGAGCGCTGCATGTAGACGCCC
ATCATGTGGTACTTCTTGGCGCCGAACGCCTGCCCGCACAGCGTCTCCAACGCGCTCGCC
ATGCCGAGCTACACGCAGCGCACAACAAGTCAGTGCCAAAGTTCAGCAAATTCAAAAGTA
AAAATGAACAGGTATAGGTTCTGTTCGTTTGGGCTTTGGCTTCTACTTGTGCAGATTTTC
CATTTTGATTAAAAAAAAAGCCACTTCTAAGGAGCTGTTGGGAAGACCTCCAGCTCCGTC
AAATAG