morexGenes - Barley RNA-seq Database

Contig contig_76778
Source Contig contig_76778
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_76778 (6833 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_76778

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_77689	4	2159 bp	MLOC_77689.1	Available	Available	LOC_Os04g42620.1, FRAME:+2, EVALUE:0.0, 13104.m04212 protein uncharacterized protein At4g06744 precursor, putative, expressed
CDS Structure of MLOC_77689

Contig Sequence (6833 bp)

>contig_76778 6833 assembly3_WGSMorex_rbca.fasta
GAGCATGCATCTCTATTCTACTCCCTCCGTTCCTAAATATATTTAGTCTTTTTAGAGATT
CCACTAATGAACTATATACGGATGTATATAAACATACTTTAGAATATAGATTCACTTATT
TTTTTTCGTATGTAGATTACTAGTGAAATATTTTAAAAGATTTATATTTAGGAACGAAGA
AAGTACAAGCTTAGGCCCATGGTTCGGTATACCCTGTGAACGAATTTACATCCGCTTTTC
TACAAGTTATGATCGATGAGCGTGGACTCAAAAGAGGTCGCAGATTCTGCATTATTTGGT
TTTTTGACCGGAAGGTGCGATGTCTTGATCGATCAACAAATGGCCACGCAGTTATATACC
ATCTTACTCTCTAACATATCTTGTATAATGCCTCGATCCACAAAATAATCATCAAAATAA
GGGTTGAAACGAAAAATGTTGCCAGATCAGACCCCGCAAACTCGTTCGACCCGTAAAACT
TTTTAAGGGGCGCGACAAAATCTCCACCTCGACCCATGAAAACACAGGTTTCTGCCTCGT
CAATACGGTGCCCTGTATCGTAGGAAAATGGTTGGCGGGATGGACATTTCAACCCACGCC
CTTTCTCCACCCCCTTCCGCCGCCGCGCCGCCATTTATTCCCCCAGTCCGCCGCCGGCTC
AGGGTGCCGCTATCAGCCGAATCTTCGGGGTGAATCACGCCGCTGGTTCACCGCTTCCCT
CTTCCGCCGAATCGTTGCACCGGCTCCCCCGGATCCGTCAATCCACGGCGGCGGAAGATC
CACCGCCGGAGATGGACTTGAGCATGTGCGAGAAGTTTCTGCTCGAGGATTCATCCTCTT
CGGATGACTCAGATGTTGAGAGGATGCTTCTCACATTTCGTGAGCAGAGCTTGGTAATGG
CCCTGGCCGTGAAGGAGCACGAAGACGAGAACCGAAAGAGGCGGCATGGATTGACTGTCT
GCCGTCTTTGCATTCCTCGAAATCGCCATCTCGGCAACGAGATGCTGATGCGACACTACT
TCTCCGCCAATCCAACATACCCACCACACCTTTTCCGGAGAAGGTACCGTATGTGCAGAT
CACTCTTTGTTAAAATTGTTCAAGCTTGCGAGGCGAATTGTCTATATTTTACTCAAAGAA
GGAATGTCGCGGGCTTGAAGGGATTTAGTGCATATCATAAAATCTCGGCAGCTATGCGGG
TAATTTCATACGGCGTTCCGGCTAACTATATCGATGAGTACCTTCGCATTAGGGAAGATT
GTACAATTGAGTCAGTGCATAGGTTTGCCAAAGTGATTGTCCGTGTCTTTGGTCCTGAAT
ATCTTCGGGCACCGAACGAGGAAGACACAAAAAAATTGATGCCATTTAACGAAAGAAGAG
GTTGGCCTGGCATATCAGGAAGCATAGATTACATGCATTGGATTTGGAAAAATTGCCCAA
AAGCATGGCATGGAATGTATTGTGGCAAGTCTCGTGATGCAATAATTGTGCTGGAGGCCG
TAGCTTCACATGATTTATGGATTTGACATTGCTTTTTTGGTATGCCAGGTACTATAAATG
ATATCAATGTGTTGCAACGGTCTCATTTGCTTGATAGACTTGCTAGTGGTGACGCTCCAG
CTTGCAATTACCCTATCAATGGACATGAATACACAAAAGGATACTATCTTGTAGATGATA
TATACCATTCTTGGTCACATTTATGAAGAGCATCAAAGACCCCCAAAGTAGAAAAGACTC
TGAATTCACAAGGGCACAAGAGGCAGCCCGAAAAGACATTGAAAGATCATTTGGGGTTTT
GCAATCTAAGTTTGCCATTGTTCGTGGCCCTGCTCGGTTTTGGGACAAATGATCCTTAAA
AAACATCATGACAAGTTGTGTTATTCTTCACAATATGATTCTCAAAGATGAAAGAGGCAT
GAACTTAGATTCTTCTATCACAATGTGCGTAACCGTGTCAAACCAACTAGAGACCCTAAC
CTAATCAAAGCTTTTCTTCAGACCTATGGAGATATTGAAAATGCAAACACCCACTGTCAA
CTTTAGAAGGATCTCATTGAGCACCATTGGCAAAGGGCTGGGGAATAGTAACATTCCATT
TTTCCATCCGTTTTCATTTTATTCATGTGTAATTTGTTTACGGGACAAGTTTTGTATTCA
TGTGTGCCATTCATTTAGTTTGCTACGCTGATTTGAATAATTATTATACTTTGGATGATT
ACTGCATTTGTAATATTGATATTCTATTTATTTTACACATGATGAGTAATTCTGATTTAC
GGGATATTTGATTTGTGGGTCGATAGAACGGCGTTCGAATATACCCCGCATTGACGAACC
GTATAACATCATCTTCTATTAATATGCTTTCATACCTGTCCGTTTTGAACGGTTCACCTT
TGTCCGCATCCTCACCGGCCCGTAAAATTCGTTTTTCATAAACAGTAAACGGTTTTTGTT
AGTCGGAATTATATGGGGTAGATGCTCTTACGAAAGCGAGCAAATCTGGATGCATCTGCG
CTCCTCTCGCACCGCACGTGAGCTCTTCAAATCACATCTGTAACCCGGGGCCACGGAATA
GCACGGATACACTGGCATCCAACAAGCAGCAAGACATGCCTGTTCCAGCTTCTCTTTGAC
AATCCTAGCACTGCTCACAAGAATAGTAAATACTCAGGTAGAACTGTAGGAGTACAGGTT
TCAGCAGCAACAGTACGGTACCGGCGGTGGCACATGGCCAGTTCCCGCCAAGCGCAGGCG
TTTATATAACCGTGCGCACCCCCTAATCGAAGGCCAGGGCCACTCGATCGCGCAGTCGCG
CTCCGTCTTCACTTCGCGCGAGGGGACCCTGACGCGAGTCAAGCACGAGCCACACTGTTC
CCATTTCTTCTGCCGACACCTCCAGTGAGAAAAAATGGCAGGCTGCTCGGTGCCTCGCCG
CCTTGCTCTCTTCTGCTTTTTGGCTTCGTGCATTGCGCTCGCGGCGCGCACCTCCGACGC
CAGCCGGCGGGAGCTCGGCATCAGCATCGGCAACGGCGGCGGCGGGGGGATAGGCATCGG
GATTGGGATCGGCGGTGGTGGCGGGGGCGGTTACGGAGGCGGCGGCAGTTACGGAGGCGG
CGGCTCGCCGTCGCATACGCCGCCGTCGTCATCCGGGCCGAAGGCGAGCGACTTCGAGAA
CGAGCGGCTGTACAGGGCGTACCTCGTGATCCAGAGGTTCAAGAAGACCATAACGTGCGA
CCCCCAGGGCGTCACCAAAACCTGGACAGGCACCGACATCTGCAGCAAGACCTGCTACCT
GGGTTTCTTCTGCGAGGCGCCGCCCAACATCAAGGAGCGTGCCCTCGCGTCCGTCGACTT
CAATGGCTTCAAGCTGGAGGCCCCCACCGTGGAGGGGTTCGTGGACGCCCTCCCGGACCT
GGCGCTCTACCACGCCAACTCCAACGACTTCGGCGGCGTCGTGCCCATCCTCAGGTCGCT
GCAATACTTCTACGAGCTCGACGTGAGCAACAACAAGCTCGCCCCCTGCGCCTTCCCGAC
GGACGTGCTGGGGATCACCAACGCCACCTTCGTCGACATCCGGTTCAACAGGTTCTTCGG
CGAGGTGCCGGCGGGCCTCTTCTGCTCGTTCCCGATCGTGGAGGCCATATTCGTCAACAA
CAACCAGTTCTCCGGCAAGATCCCGAGCAACCTCGGCGACTCGCCCGTAAACTACCTCGC
GCTTGCCAACAACCAGTTCACGGGGCCGATCCCCTCGTCCATCGGCCGCGCCGCCAACAC
GCTACTGGAGGTGCTCTTCCTCAACAACAAGCTCAGCGGCTGCCTCCCCTACGAGCTCGG
CCTGCTCGCCAAGGCCACCGTCATCGACGCCGGCACGAACCAGCTCACGGGAACTATACC
GGCCTCGTACGCGTGCCTGCGGAAGGTGGAGCAGCTGAACCTGGCGGACAATCTCCTCTA
CGGCGAGGTGCCCGACGCGCTGTGCCGGCTCGCGTACCCGTCGTCGGGCGGCCACCTCGC
CAACCTCACGCTCTCGGACAACTACTTCACGTCGCTGGGGTCGTGCTGCTGGGCCCTGAT
CAAGCAGGGGAAGCTCAACGTCGCCCGCAACTGCATCCCCTATGCGCCCAACCAGCGGTC
GCACGAGGAGTGCGCCGGCTTCTTCCACAGGACCAAGACCACGTGCCCCGTCAGCACCTA
CGTGCCATGCCACCACTACGCCGCCGGTAAGGAGGAGGTCTCGGCGTCGGAGGAGAACAA
GTACCGGACCTACTCGGCGCTGCACCCGTGAGTCCGTGGCTCCCAGCAGCAGTCAGCACG
GCCGGCGAGGGCACACGTACACGTGCTGAAAAACAAATTGGGAATGCACCTGTGCGTCTC
GTCGCGGCTGCTTGGGTCGTTGCGATGGCTAGTTTGTGTTGATATTTTATTTCAAAATCG
TGTGTACTTTTCTAAGTATTTATTATGTTCGCTTTCTCATACTACCAGCAAGGCTTGATT
AAGTAGGTTGTTCGAGGTTACGATGGCTGAATGGCTGAGCATCACAGGCGGGCGCGTTTG
GTTATCTATATCATAACTTTTGATCCGAGCGTCAGAATGACGATCGGTTTTCACGGCTGT
GGTTTTTAGACAAGCTTTTTAAAACTAGATCCCATATATATAGGTTTCGATGAACTTTTT
TGAACAACTTTGTATGCTAGATGAGGCAACTTTAGTGCTATAAGCAAGCAACTACTTTCC
CCTCTTAGTATGACTATCTATCAGCGAAGAATTATTCTAAGTTGGTTACCACGACTAACA
GTTGACTAGATTCACCTCTAAAAGCTTTACATAATTAAACAATGTCGATCAGTTTCCTAT
AATTGATGCTCACTTGCCTACAAATACTATAAAATTGCTTAATTTTTATGCTCAGTTGCC
TACAAAACACTATGAAATTGCTCAATTTTGATGCTCAGTTGACTATTACTGATGGTCAAT
TGCCTACGATTGATGTTCAGTTGCCCGTCATTAATGCTCAACTGCCTTCTATTTGTGAAT
AGTTACCATAATTGCACTCGAGTATCACAAAAAAGTTAGCAACTTTTAGTGTGTTTTTTG
CGCAACTCTAGTGCGTTCAACAAGCAACTCATGTATATACACACGATGCAATTCATCTAG
CATCAAAGTTGCTTATGTTTAGCATCAAAATTGCCTCATCTAGCATCGAAGTTGCTTTTG
AAAAAAAATCTTCAAAACATATTCGTATGGGATCTCGTTTTAAAGAGTTCGTCACGAGAA
ACCTAACGGTGAAAACATATCATAATTCCGACACACGGTTTGATAGTTATAGCTTTTTGA
ATTTTTTTCATACAGGAATTAATGGACATCCAATGCATGGGAAGCCGAGCATGCACATCC
CACGCATAATTTAAGCATTTCAGTTTGAAAATAGCTGACCACATCTGCCATGTGGTTGCT
AAAGGGTGAAGTTATTTAACCTTCTTATCATGATAGATAATTTTGAAGGAATTTTTGTTG
ATAGGCGATCATACTACACACACTAATAAGAAGTTGCTTTTCTTTAGCATTAAAGTTGCC
TAAATATGACCTCACAGTTACTCAAAAAAAAGTTTGTCGAAAACTATTCATATGTGATCT
AGTTTTGAAGAGCTCGTCGTAAGAAACACAACCGTGAAAACGGGTCGTCGTTTTGACGCT
CGGTTCAAAAGTTATAGTATTTTGAAAAAAACCCGGAATAAAGTGAAATGACTTATTGCA
CACTTCCGCGTGAGGATGCGCTCGTTCCAACCAAATAGTGCAGCTGCACTTTTTAGTATT
GGGATTTTACAAATTATAATATCTCACTTGGTCGTGCTTAGAAAATGCAAATAAAAAATA
GCATATATATGTTGTTTCATCGTTGCATCCCCTCTAACCTGCTAGTGCCGAGATAGAAGA
CATGTTGTTTGGTTGCGCACTTGTTTAGAAGGAAACACAAGTTCACTTGTATTCTCACAT
GCAAGACAATTGTCTTGTAATAGCATCTCTAACAGACCCTTTATACTGTACCGACCTGTA
AAATAATCATCGTTTTACAGTTTTGCGTGAAAAAAAGTCCGAACACAAACCGTATCGGAC
CACGGCCCTTCAAAAAAATTCGAGGCGCGGCAAATTCTTTCCCTCAACCCTTAGAAACAC
AAGGCGGGAGACCGACCCGAGGGTGACCCCTATTGCTAGCAAGATTTGGTGGGAGGGACA
TGATATGCCTCAAATGTATCTACTTTCTCAAACACTTTTGCTTTTATTTTGGACTCTAAT
TTGCATGATTTAAACGAAACTAATCCGGACTTACGTTGCTTTCATCACATCTACCTTGAT
GTTATTTTTGTACATAAATAAAATTTCTCGAAATCGAATGAAACTTTTTATGGATATTTT
CTCGAATATATAAACAATTATGGAGCGAAGACCTACCGGAGGGGAGCCACCCGTGGGCCA
CAAGCCAACAGGGCGTGCCCACCCCCCTCGGGCGCACTCATGTTGGCTTGTGGGGCCCAC
ATGGCTCCCCCGAACCTATTTTTAGTCATATAAATTCACAATTACAAAGAAATAATTAGA
GAGAAGTTTTCAGCGTGTTTTACGAGATGGAACCGTCACCACCTCCTGTTCTTTCTCGAG
AGGGATGATCTGAAGTGTGTTTGGGCCTCCAGAGAGGGGGACTCGTCACCATCGTCATCG
CCAACCCTTCTCCATCAACAATTTCATGATCCCCACCACCGAAAGTGAGTAATTACTTTG
TAGGCTTGTTAGACGGTGATGGATTGGACAAGATTGATCATGTAATCGAGTTA