Contig Data
morexGenes
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Map Locations of contig_76706 (6902 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_76706

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_77682 1 1040 bp MLOC_77682.1 Available Available None
MLOC_77683 4 1137 bp MLOC_77683.1 Available Available LOC_Os06g01400.1, FRAME:-3, EVALUE:8e-179, 13106.m00042 protein glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed
MLOC_77684 1 1128 bp AK249030.1 Not available Available None





CDS Structure of MLOC_77682






CDS Structure of MLOC_77683






CDS Structure of MLOC_77684






Contig Sequence (6902 bp)

>contig_76706 6902 assembly3_WGSMorex_rbca.fasta
GACGCTCGTCCGATGTGGGGGGGGGTGGGATGGGGAGAGACCGGCGGCTGGGGTTGGAGC
CCCTCGGCCGCCCGCGCGGGGGCAGCGGAGTGGAGGGGGAAACGTGTGAGATGCGATCTG
TTACTGTCTGGCGGCTAGAGATCTGCTGCTTGAATAAAACACTAGAACAAGAAAATTGTT
TTTTTCTGAACTTTTAAGACAGTGGGAGAGCCTCCCACAGAATAAGAAAAATATAATATG
GATGAGGTTAGGTAATAAACAAATTTTGTTGCATTGAGAAAATTTTCCAGGATCAATGAT
GAGAAAACAGAGAAAGAAAACAAGTAAATACCTCCGCATGCGTCCAAAATATCTTGCACG
CTCAGTTACACCAACAAAGCCTCTAGAATCTAGAATATTAAAAGCATGAGAGGCCTTCAG
AACCTGGTCATACCTAATCCATTGCAAATCAAAGACAACCTTATCAATTCTTAAGGGTTC
ACAGAAAGTGCAGAAGAAGAGGAAGAATATATCAGTCAAGCATACGCAGGAATTGGCAGC
CCAAGTGATAACAAAGAGCGAGCCTCTTCTTCAAAATCGTCAAAGTGCTTTTGAATGTGA
TCAACGTTTGCGTGCTCTAAATAATATGCACTCATCTCTTTCCTGCACAAGGACACCAGA
AAAACGAGGTCCTAAGATCTAAGCACAGTCGTAATAGACTGGAACAATGATACTTGTCAA
CTCATCTAATTCAACAGGAACAACAAGAATGATAGATAAGAAAGAAAAATACAAGAACAT
GAATAATGAAGTAGAGCATGTATAGTTTCAAAACTGTGGAGAGGAAACATACTCATTCTC
GAGGAATAGTTCCCCATACGTAATTCCTTCGGTATACTGAATCTTTTTGAAATGATCTAC
TCCCTGTCAGAGCATCTAAAACAAAGTAAGGTCAGCTCTTTCAATGTGCATACGGCCTAG
CAGAGTAAGTTGGAAAATATCTTAGTAGAGAAAAAAACTGAGGGGTTTAGAAGAGAAATT
TGGTTGCTCTATTAGATTTATGATTTATGATGTCAGAAAAAAAATTGGATTTTCACATGA
GCGTACAGATAAAGGAGGCAAGATCTAGAAAAATAAATTGAACTGTACTAACACTCTACA
CGTATGGAGTAAAATATACAACCGCACTAGTGGACTTACCTGAAGTGACATGAGGATACG
CTCAAGTCCATATGTTATTTCGACAGAAACTGGCAGCAAGGGGAGGCTTCCAGACTAGAG
TGATGAAATTTTATGAGGATAAATAAAAATCTAAGATTAGAAGGGATTTAGGTGCTTCAA
GCAGGACATACGCAGCAACCTTAAAGAGAAGGACATAATTTGTACATATCTGGTTAGCTT
TACCTGCTGAAAATATGTGAATTGCGTGATTTCCATGCCGTCCATCCAAACCTCCCAGCC
CAGCCCCCAAGCTCCAAGAACCTGTCGATAATGGGAAGAAACATCAAGCAGGTGAAATAA
CACACTGAAACGACTCGGGAAAAAAAAAAAAAACACTGGAGAGCACTTCACTGCAACGAC
TGTCATTATGGGTATAAGTAAGTGGACATGTTGTATGATTTTTCATCAGAATTCATTTAA
AGTAGGACATGTGCAGAAGTCAATGAAGAGAGCAAAGAAAAAGGGGAAAGAACATTACAG
GACTCTCCCAATTGTCTTCGACGAAACGGATGTCGTGTTCGGGAACGTTGATGCCTGAGA
TAAGAAAAGAAAAGAGAAAACACCGCTTATAGGCAACCACTGGCTTCCTCTGTTGAGAAA
ATAGATAAAAAGATAATGCTCCCGATAGAGCTGAATTAAGCCAAGTGAGATTCAGAAGAA
GTAATGATGATACCTAACGCTGAAAGGCTGTGCAGGAAGAGATCCTGCGAGTTCCCCGGG
TCAGGCTTCAGGATCACCTGTTGTTGGCCAAAAGGCATGGTCAGCAATCAGTAATTGGTT
CGAGCCTGAGCAAGCAAAAATAAAAATGTGTGGTGGGACAGAACAATGTTGGCAACTAAC
CTGGAACTGGGTGTGGCGCTGGAGCCTGTTGGGGTTGTCGCCATAGCGGCTGTCGTCGGG
CCTCACGCTCGGCTCCACATAGCTTCATTTCAATTCAACAGAGAGCGTCATGTTAGCAAA
ATCACAAATGGGGGCAAATGCATTATCTGAACTGCAAGCATCTACGAGTACTACTTAGTA
TATTCAGTAGTAACTCGGTTGTCTGAACGGTGCTGCATTAGGAGATGTGCATTGAACTTG
GATGGATAAGATGCAGGGTCGGGTTACTCACGCGACGTTCCACGGTTCAGGGCCCAGCAC
CCGGAGGAAGGTGAGGGGGTTCATCGTCCCGGCGCCGACCTGCTCGATGGATTGATTGGG
AAAATTCAGAATCGTCACATCTATCAGCCATTGATTGATGCTGCTGCTGGTGAAGCTACC
TAGCTAGCGAATACAAGTAGGAGTAGGAGTAGAAGAGAGGAAAAAGTTTGTGATTTGGTG
GTACGGTCGGGTGAGTAGAGACCTCGGTGTTGCTGCACTGCATGACCGCGCATCCGACGG
AGGCCCAGTACTCCTGGAGCCGCTGGATGGCCTGCTGGAAGGTGAGCGCGCCGCCCCCCT
TGGTGCCGGAGCCGGAGGAGGAGGAGAGCGCTGACGGCGCCCCGTGGGAGCCGGAGTGGG
CCGCCGGGGAAGACACGAGGAGACGGCGTGGACGTGGGCGGGTGGACGGAGGAGCGGGAG
CGGTGAGGGCGAAGGGGTGAGTGGCGGCGGGGGGCGGAGAGAGGAGGGGAGTAGGCATGG
CGACGGCGACGGCCATGCCCGTGGCCGCGGCCATGGCGACGAGGAAGGAGAGGAGAGGAG
AGGATAAGGGGGTGGATGGGATTGGGGCGGGAAGAGTTTTATGCTGTTAATTAACCGCCA
AATCTATCCAACCTGTTTCTTTGTTTCATTATTATTATTACTCCCTCCTATTCCAAAATA
TAAGACCTTCTAAAAAATTTATAAACGAAGGAAGTAGTATAAGAGGAAGTAATATCTTAT
AATGTAGGTTCATTTATTTTGCATCGTATGTAGACTATAATATAATTTTCAAAAGGTCTT
ATATTTAAAAACGAAAAAGTAATATATAAATGTTTAGATTATTAAAATAATGTTTTAAAT
ATTCTTATATTAATTTATGGGGGGAGTATTATATGAACCATCTGGCCTGGTTCTGAATTT
AATCACTTCCTCCTATACAAACATTATTATATAAAGAGGTCACGTCTTGATTCGAATCAA
AGAAAGAATTTTAATAATCTAAACATTTTTATATTAATTTATAGAAAAAGTATTTTATAG
ACCATTTTAAAATGTCATTTTTTATTTTTTGTTTTGCAAAGACTTCCACGAATGTTTGTT
TCGGGGCGAAAATTTTCAAAACGTTTGTCGAAGCTATCGTTTCGCTTTGTTTTCCCATCC
CATATGAGAGAGTCGAAAGACCAGGGATGTTAACTTCTCGACATCTTCAATTGATAATAT
ACCACCAGGGATGTTAAGAAAGACCAGGGTGGCAACAGGGCAAGATTGGTTCCCCTGAGT
GCCTTTTGTAATTTCTCGTTGTGCCATTGTTTATTTTCAATATAATATGGGTCTTGTCAT
CTATCGTCATCTTCTTAATTGAGTTCATTGTCCCGGCATAACCCTAGACGCAGACCGATT
ATTAGGGGGGGGGGGTCAGTTGCTTCCCCTCCCGGATCGCACGCGCGTGCGGCTCCGGAG
GCCCCCGAGGCCCTAGTACAGGAGGTCGTCAGATCTGCTCCCCCCCGCCGCTGCCGTTGT
CGGCGCCGGCGATGGCGGTCGCGCCCGACTATCGAAGGCAGGGGTGCTGGCTGCGCCCCT
GATGGACCCCTTCGCGCGGAGCAGCGGGCGGTTGGCCGTCTTCGCATGATGGACGGGCGA
TGATGCCCTCGGAGGCGTTGGCGTTGGAGCGGTCGGTGGAGGTGTGGTGTGGGTCAGATC
CAGATCCGATCTTGGTTTTGGTTTGGGCCTGTGTGTTGATTCCTGTGCGTGGCAGTCCCC
TGGTACGGGTGGTGGTCCTGGCCCTCGCACGGCATGGTATGTGGTTGCGGTTCCTCGTCT
GGTTTGATGGTGGTTGCGGTGGCATGCTCCCTCGGCAGCGCGGGTGTGGATGGACCTCGA
CTGCACGGCTTTAATGGCAAGTTGCTACGGTGTCGGTGGTGCAAGGCTTCATTGGGCAAG
GTTGCCTTACCTGGAGGTGTGGAGATGCGCTACATTATGGATGAAAATCTTGTCCGGTCT
TGATCGGGTCGGTGACGGTGATGCCCGTGGGTGTCATTTCCTTGTTGGAGGCATCGTCGA
GTGTGTCGTCATGTCACTCACTCCTTTGGTGTTGGCAGTTGTCTCCGGGCGAAAGCCTTG
AATCGGTGCAGGATTGGCACGATGGCGGCGTCTTTGACGTCGTTCCTCTGTTGGGAGCAT
TGTGTCGAGAGACATGGCATGGAGTCATGTGTTGCGCTTCTCCGGTGCTGGCCATGGCCC
ACGATTGTTCTTCTTCGGTGCAATGTACGGTAGTCGTTGGTGAATCCAAGAGAGTGCCTT
TTTTGAGCTGGATCGAGTCATGCCATCCTCTTGCTACCTCCTTTTAGGCATTAAGGAGGG
ATGATGCGTTGATAAGGAAAATTTGGTGGGTGCTACTGTTCTTTGAAGGTGATCGATGTC
GGTAGAGACGTGGCGAGGTTTTCGTTTTTGGGCAAACTCTTTGCTTTGTAGTTGTGTGGT
TGTTGTTGGCTGTCTTTGGAATACCAGATGTGGAGTGGTTGCTACTCTTGTTGTTCGCAG
AAAGCTGTAATGGTTTGTTCGCAGAAAGCTTAATGGTCTGGTTTGTTTAATTCTTTCTTC
TATAAAGCTATGGTACTCATTTTACGTACTCTAAAAAAAAATTTAAGCTGTAATGGTCTG
GTTTGTTTAATTCTTTTCTTCTATAAAGCTATGGTACCCATTTTACGTACGTCCCGGCAT
CTGTCGCCATCTCCATTGTCCTGCCCAAACTATGGATCCTTGAGCGGATTCAGAATTTCA
GAGTCGTGGAGTTGGCGATAGATGTGGGGATAATGAACTCAGTTAAGTATGCAAGCATAA
TGCCCTTCAAGTGCAATCATGTCAATGAGAAATCTAAGACAAACCATTCAATTATTCTTG
CCATTTTCCTCCTTGTACACAGTAGAAAAGAATCCATCCATCCACACGTTTTGCTACTAG
TAGTACGTATCTCAACACATTTGCTAAACATGCAAAGTAGTATTAACCGAATCACAACCA
CAGCAACCGTACTAGCCCTATTAATAATATACCACCCAGGAGGGAGGGAGTAAAAATCCT
TTTATTCTTCTACCAACAACAGTGCCTTGCCAAGTGAATAACAACGAATCACGCTCTCCT
TGATACTCTACCTTTTAATTACTGCTTCGCACCCACAGCCCAACATGGATAGGCAGACAG
ATTCAGAGATGAAGGGTCCATCATATCATAGCCTCGAGAGCTTGAGCTGCTGCTTGAGCA
GCGGCCGGAGGTGCTCCTGGTAACCGTCCGGCACCACCGTCTCGTTCAGGGGGTCCTTCC
ACGCCTCCTCGTACAGCGCCGGGTACACGTCCCCGTCGTACCGCCCCAGCACCGACCCCA
GGTAGTGGTCTGTGTAGTCAAACGCGTCCACCAGCGCCACGGCATTAGGACGCACCTGCA
CAAACCATCACATTCACTTCAGTTCGGCCCGTGGAAAGGCAGGCAGCTTCACCGATTGTG
TATGTCGGACACGTTGCCGCCACACGGATTCTTACTTGGGCGTAGAGCTTGCCGAGCTGC
TCATTGGCCAGCGCGCCCTGCCTGGCCGTGACGCACCCCGTCGACAGGAAGTCGCCCAGG
TGCTTGTGCAGGAGGTGGAGCGCGTAGATGCTGCACAGCTTCTGAAGCTGCTCCTTCACC
CCAGGGCCAGGGATGTCCTCCTGCATCTTCTCGATGAACCTATGGCAGAGAGGGGGAGGC
CGAAGATAAATGAATGATTGGATTGTTCCAGAAACTAGATATGCATCAACCCCAGCCTAA
GACCGACAACTCACTTGGTCACAATGATCAGCTGGACGTGAGCCACGGCAGCCTCGAGCA
AATCAGGTGAGAGCTCAGAGAAACCTGCAAAGGAACGAGATCATCCATGTCAGTGAGTGC
ACCAAGAAATTCACTAAGAGATGCTACAAAAAACACCCAAGGTTAAGCCAGTCTTCAGCT
GTTTTGATGTTTTCAATTACTGACTATGTGCAACACCAACCTTCTTCTTGGCTTGGCGCC
TTGCTGATGTTCTGGGCACAGTTCACGGCCATCCTCAGGGCCCTAGCTTCAAACACCTCC
TTTACGGTAGCAGGATTGAGCCAGTCTTCGGCTGCAGAGAATCATTGATGCATGAATCAG
TATGACGATCAATCACAAGGTCAATCGCTTCACCAAAAAGAAGCTCCAGACAAAACGTCT
CAGGCAGTTGCAGAAGTTATGTTATAAAGAGAAGTCTGCCTGAAGATGTAGCTGCATACC
TGTACTTACAGCGCTTTTGCATTGCATCAAGTGCTGTATGTTGCCCATGTAAGCTACGGT
GCCGACAGGTTGGTTCCCAGTGGCCACCTGAGAGACAGTCTTCATCAAAAACCTTGCAAC
CTGCAGAAAGGATCCAAGGTTGTGATTATACTACTACTGGCCAATACTGAACCGGGGTAC
AAAAAACAGGTTAAAGCGGATCAGGTGCCAAACGACACTAACCTGCAACAGCAAAACGAC
ATTGTCTCCTTCATAGGTGCAGGCAGGAACATAGACCGCAAACAGTTCAGGGAGCCCACT
GC