morexGenes - Barley RNA-seq Database

Contig contig_7670

Source Contig contig_7670

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_7670 (5179 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_7670

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_77680	5	1220 bp	AK357524	Available	Available	None
MLOC_77681	1	742 bp	None	Available	Available	None

CDS Structure of MLOC_77680

CDS Structure of MLOC_77681

Contig Sequence (5179 bp)

>contig_7670 5179 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCCCCTAAGCACTTAAGCAGGAATTAAGAGGATGATGAAGTAGAGT
GTGTGCGGGTTCGTTCGATCACTACGGTAGCTACTTGTAGATCCACTCGTCGGAGCGCTT
GCCGCCGCCGGCGGAGTCGACGTCGATGAAGATGCTGACGGCCTTGCCGATGCGTGGGCG
GTCCTTGGTGGTCTCGAGCGAGTTGCGGACGTGGGCGACGGCGCCCCATGAGCGGAGCGT
GTTGGCCACGTCGTCCAGCCGGAGCAGGTACTCCTCCTCCGTCAGCGGGAAGGACCGCTG
CTCCCGGTACTTCCACATCACGTTCATCGCCAGCAGGTTCCGCCCCATGAACTCCTGCAT
GCCATGGACAGGGAGGTCTGTTGTTCCTTCCAATGGATTCCTCATCTGAGTCTGAATCTG
AATGGATGGATGGAAAGAAAGGAATGAAGGTGTGTGTACCTTCCGGATGAGCGTCACGTC
GTAGCTCCGGCCGTAGCGCTTCCGGATGAGCGTGGCCAGGTCGAGCCCGCTGAAGCCGTC
GTCGTCGGGGACGCCCACCAGCCGCTCCAGGTCCTCCCTGTTCCGCCTCGACGACGACGA
CGACGACGTGCCCTGCAACTGCAATCGATCAGTCAGGTCCCTGTTCTGTTCGTCAGCGAT
CACCATGTATGTGCACACGCACGCAACAACAAGATTAGTGCACCTCGTTGTCGTCGCCGT
TTCTTCGCTTCTCTTCTTCTTCTTGGTCGTCGTCGTCGTCGTCTTTGCCGCTGCTGGATT
CGCCGCCGTCGGCGACGGCTCTGACGGCTCTGACGGCGCCTCGGCGGAAGGAGCTGGAAG
AAGGCCTCCGCGTGATGCTAGGATGAGGGTTGACTGCGAGCTGGCCTGAGCTGCTCCGCC
GTGGACATGATAAAATGTCGTGTTGGTGGTGATGGATTACGCGCAGGTGGTTCTGGGGGT
GGCCGCTGGAGAGCACATTCATCATGGGTTCTGTCCTGTCTATCGATCACCACCGCGCGC
AAAATGGATGGACCGATCTCGAATTGTCTGTCGTCTAGGAGCAGGTGGAGGAAGAATTAA
CCTAACTGTCGGGACGAAGCACAACCACAATCAATGTGTATGCAAAGAACAGAGGACTAG
GTCACCAATACTGAATTAATCTTATCTTGGCCATGTGGTTGAAAATCTCACATTCAGAAC
TGTAACGCCCAACAGTAAAGTGATGTGTTAAAAAAGTACATATCAGCAAAGGGCATTTGG
TCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGAGTTCAATTCTCGGAATGCC
CCCTTTTTATTTCCCTTTTAACACCGTATACATTTATTTTAATCTTTTTTACCTTAACAC
TGTATATTTTTTTACTTTTTACTCTTCTTCCCCACACCACATACCTGCCCCCAATTTTGT
TAATCTTTTTTATACCTTAATGAATTATTTTACTCTTCTTCCCCACACCACATACTTTCA
CTACCTGAACTGAAGGATTTTTGTTTTGTTCCGCCAAACACCTGAACACCCCACACATAT
ATGATGCTTTCGCAAAATACTTCCTCTATTCTATAATACAAAAGTGTTTTATTACACTAT
ACTAATGTTAAAAACATTTTTATGTAATTATATCATGAGAAGGCGGAAGTAATACAGAAC
AAATATCCTATGAACGAACCAACGAACGAATGGATGGACAGACATCACCCACGCAACCAC
ACTGAGCAAATGGAGGAAGGAATTAAACAAACCCGAGTCAGCATGCATGCAGATTGCAGA
TGGTCAATAATCTAAGAAAGGGAAAAGAAGGAATAATTGGCAAGGAACTAGCGGAGGTAA
TTAAGCTAGTTAGTTACCTCGGAAACTTGTTGAGATCAGATCCCGGTCCAACCGAGACGA
CGAGTAAGAAGGCTCCTTGATCGATTGCTTCTCTGACAGCGAGAGCTCGCTCGCTCGCTC
GGAGGAGCAAGGTTCAGAAGAAGAAGAAGAGGTGGATGAAATCCCCAAGCTTTGCTTTTT
GGTAGGCTTGCGTGACGCCACAGCCACAGCCACAGCCACACCAGCAGGCCAACAAACTCA
AGAAAAGGATGCGTGGTAGCAGACGCAGCGGGGACGCTCACCACCACATTCTCTTTTTCT
TTTTTTCTTTTCCTTCCTCCATCTCTCAGAAGAAAAAAAACAGTACAAGGTGAGGGATTT
GCTCGATGAATTCGAACAATCGGTTGTAAGTACTTTCTCCGTTTCTACGTGTAAATCCTT
TTAGAGGTTTTCATTACGGACCACGTACGGATGCATATATACATACTTTAATAAAGTCTA
TTTTGTTTTTACCGGCTTGGGTTGTTTCTAGCACTAGATTTTTCTCTCGGGAGTCTGTTT
TGTTTTTCGAGACACCGTCGGCACGCACTCACCTCTCTAACTTTTCCCTTTTCTTTCCTT
TGTACGTACGTACTGTGCATAGAGAATTGTATTAGTTTATTTTTTGACACTAACCGACAT
ATTTCCTTGAAAAATTAGTCGGGTCAATGGCCATCCGATACGTCCACTCGCAACCATTGG
ATCTCAATGCACCCCTTGTCTTTCTCCTCTCGTCGCACCAACCTGCGCCTGCTTCATTCT
CTCCTCTAGCCGTAGAAACACAAACAACGCTAGTTCCTGTCGCCGCATGGCTCACAGCTG
CCACACCACTGGTCTCCTCTTGCAGCAGCCGCCGTCGGCAAAGCAACATCGTCGGAAGCC
GTCATAGGTTTCCAAATGCTAGATTCACCATTACATGGTTTTCTCTTTGCAATCCTTGCT
TAGCATGACAATTAGTCTATTGATTCACCCATTTACTTACTCGCTTGTTTATCAAATACT
ATTATTTTGTACCTAGAGTGAACAGATTTTTCTTCCTTTACATATTTCGTCGGACAATGA
ACGTGCCGTTATTACCTAGCGCATTTGGTTGAATCAATCATACGTGTACCCGCAACAATA
ACAAAGGAACCATATATTTAGCAACAAAAAAGTTTAAAAGAACCATCATATGTGTTGGTA
AGAGGGGAATGAAATCGGCAGAGGAACCATGGTCCATGGATTGTCAGAGGTCGATGGCAA
TCACAGGGTACATGATAAGAATGGGTACTAAGTATAACATATACTATTTAACTTGTTTAA
TATTTGGTTGAATTAATCATACATGTATCGGCAACAATAACAAAAGAACCATATATTTAA
GAACAAAAAAGTTTAAAAACAAGAGAACCATCATATATGTGTTGGTAAGAGGTGAATGAA
ATCGACAGAGGAACCATGTATCATCATAGAGGTCGATCGCATCAGCATCACGGGGTAAAT
GATAAGAATGGGTACCAAGCGTAAACATATACTCTATTTAATTTGTTCAATTATCAAAGT
GAGCGAGAAAACAAAACCATGACGGCGCATACATAGTCAAGGAAACTAATAATCAAACAA
CTTTAACAAGAGCTAATAGTAGGCAATGGATGGTTTTCTTTATTTGGTGACTTTGTTGAC
GAGCACGTCCAGGACATCCATGGCCTTCTCGGCATCGTTCTTGGTGGAAACATCGTCGGG
TGTCTTCTTGTCATTCGCTGGGCGACACCTGTCGCAATTCCACTTGGCATGCGCCCCCTT
GTTCTCCTTGATGAAGCCATGGATTTCTGGGAGCTGGGCCGACCCGATGTCGTCCACGCC
CTCTTTGGTCGTGCACAACTTGTCGAGTGCTTCGCCAGCGTTGGTCAGCTCCTTGTAGCA
GGTTTCAAAGCAGACCTCGTCGGCCTTGGTCAGATCCGGGTAGCGTTCCCTCTGAACGCC
CGGGCACGCATCCCCGGCTGCTTTAAGGAGGAGGGTGGCGGTGGTGAGCGCCGCCGTCCC
CACCAGCTTCTCGTCGTCCATGCCCTTCCACTCGTCGTAGCGCATGATCATGGAGGCGCA
AAGGTCAGGGTAGGGCGTATCGGCGCACAACTTGTTGACGTTGGCGTCGTCGCCATCTTT
GGCCGCGGCGGGGAGGGAGACCTCAGTTATGAGGAGGAGGAGAAGAAGGACGGCGAAGGA
GGAGATGATGGTGAAGAGCCTCGCCATGGTCAGCCGATGCACAAACTAATCAATGGTATG
TATGTGGAATGGAGGTGTGTTATTGCAATCTCGATCAATTGTTGGCCTCTTGATTAGTTG
TCCCATCCGGCTGCAGTGCTATATATAGATAGATAGATATACATGCGGACCGCAGGGTAC
GTGACACTGAACCAATGGATAGCCGGAGGTTGAGGAGTTGTGTCTTTGAGGATAGCCAGA
GATCGTAAAATAGGGAATATGAGAGGCGGTGGCCATGGTTAATCCGTGGAGGTGAGGCCG
CCGAGCCTCAGATGCATGCATGTTGCGGATGGTACGACGCGTGGTAGGCAGCAAACCAAC
GGATGGTCGAGCTCTTTCAAGAGGTAAGATTAACTTTTAATCTTAGCTAGCCTTCGAGTG
ATCAAGCGTATGCTTGACCATACGAGTCCTTTAGTAGCTACTTATAGTAGGTGATTGTTG
TGTCTGTTGAAAAGGAGTTCATAAAGACATTATTCTTTTCCGGTTACCACGTGGTATGGT
TTGGGACAAGGAGATATGGGTATTACTTTTAACATGATATATATGTGGGATGTTTTCCGC
ATCATGTTAACTTGCATAGGCAAGAACCCCGCAAAAACAAAAGAACTTGCATAGGCAAGA
GCTTGCACGACACATACATCAACGAAACAAATCATCGGATATGGAGTATCGTATCTTCGG
GAAGTGTCACTCCAGTGCACATGGATGATACCATGCCGAAAACAAAATTGCATATAAGGT
ATTACAATTTATGGACCTCTTCCAACTCCACATGATAACACTCCTATTTTAGTTATTGTT
GATTATGTCACTAAATGGGTATAAACCATTCCAACTAAAAAGTTGATCATAAGACTTCTA
TTAGAATGCTTAAAGATGCTATTTTTCAAGGTTTGGGGTTCCTAGATATCTCTCATGACT
AATGGTGGTTCAGATTTATTCAGGGTGCTCTTAGGAAGTTCTTGCTAAGTATGATGTAAA
CTACTCCCTGTGTCACATAATAACCATTACCAATAGCATCCTTAGTCGCTCTCTCGCGCG
CGCGCGCGCGCGGGGGGGG