morexGenes - Barley RNA-seq Database

Contig contig_76227
Source Contig contig_76227
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_76227 (7734 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_76227

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_77571	1	2103 bp	MLOC_77571.1	Available	Available	LOC_Os08g04590.1, FRAME:-3, EVALUE:6e-36, 13108.m00440 protein csAtPR5, putative
CDS Structure of MLOC_77571

Contig Sequence (7734 bp)

>contig_76227 7734 assembly3_WGSMorex_rbca.fasta
AAAAGGGGGTCAGGTATCTATGATGAATTGGTTNCTCAAGTGCTTAGAGATAGCGACCGA
AAATATTCAGTCATTCTCCCACGAAATTCTGTGTCCAAAGCCTAAACATCAAAATCATGC
CACCAACATTTCCACTCGGCCCTATCAATTTTTTGAGAGACACATCCTTACGACTACATC
AATCGTGTTTCTTAACGCTTCCGCTTAGCAATCTACAAGGGTATGTAGATGAACTCCCCC
TCTCGTAGTTGTACTTCTCCATAGATAGATTTTGGGTGCACATAGGAAATTTTTTGTTTC
CCATGCAACGTTCCCCGTCAGCAATATGATGGACGAACCAAGTTAAGCAACTTGGATTAG
TAGGACGATATGATGTTGGGACGGTACACACACTCCATCCAACTTAATCTAATCGGTGTT
TTGACCAAACTTGACATGGGAAGAGTCCGTAAAGAGAGACCTAAAGGATTGGAGCATCAC
CAAAGAACTAGCCATGGACATGGGTGCGTGGAAGCTTGCTATCTATGTGCCAGAACCATG
AGTTGGTCGCGAGATCTTATGGGTTTCACCTCTATCCTACCCCAACTTGTTTGGGATTAA
AGCCTTTCTTGTTGTGATGGTGGTGGTGGTGGTGGTAGTGGTGTTTCATCCACCCAACGA
TATAACAACTCATCATTGTCATAACTCATCATCATACTAGTACATGACAAGTACCACGGC
CTCCTGATCATAATTGTCATCACAGTCATATACGAACTTATCATCTAGCATATGACAAGT
TAACCAACACTAACTAATTGTTATCATCCTAGTTAAAAAACTCATCATCATCCTAGCACA
TGATGAGTACTAGTTAGGACCTAGTACTCTTTCTTAGGTAAAGTAGCATAAAATAGGTAA
AATCCTACATCTCCATTACGAAGAATAGATATCAACATATCTTCAACTTGTGGCATGTGC
AAATCCTTCATCTCTGGCAAGTGGTTGCCTGCGTGCATTCATTGGTTTGCTCCATCCTAT
GATTTTGAAGCTTTCATCCCTTCGATAAATCAAGTATGCACTGCAAAAACCAACCGACAG
AATAGGTCATAAGCTAAGAATATCCAAATGACCTTCGACAAACATCACGACAGACACAAC
TCTGGCGGTAGTTTCTGTTGATGAATATAATAATAACATAGTTAGCAATCTAGTTTTGCT
TAAGAACAATATACGCAAAAGATGGACTAGTGACACAATAGTTAAAAAATATTACCATGC
TATCTGCACGGATGTTAACATGGTTCAACTCGTGCACTAGTGGCACGTACTCAATATAAC
TTTTGCCAATTTGATAATTGGTCTTATAATTCTCAACATCATTAATAAATGAGATTAGAT
GATTTTCTCCAACCAAGTTTGCTCAAAGTCATAACTATAGTACGCCCGGTATACTATCTT
CTATGTATTTCTTAGAGAAAAGAATAAAGCGACAATTAAAAAAATAAGTTTAGTAGGGAT
GAGTACCAAATATTTTTCAATAAACAATATAAATTACTTCAAAAATTTGATGACAAACTC
ACATGGAGGTAGAACTAGAATCATGTCCATATGCACCCAAATTTTGATATTATTTTCACA
ATCATCTTTAGTACAAAGATCGAAGGTTATTTGCATGCCCTCCTGAAACCCATAGGCCTT
TCATAGTGCTCTCCAATTGGAACAACCAAAATATGAGTAACCTACTGGATTGTAGAGATT
AACATCAAAAATGAGATGTTTCGTCCTTAGGTGAGCTCTCTTTGTCTCCGTACTCTCCCT
ATCTTCGAAATGGAACTTGTCCAAGACATACAGTCTTGCATACCAAGGAATACACTAGTC
GAATTGTAAAAAAGAAAAATAGAAGTTCAAGCAAAAAAAAACATGCCATGCTTAATTACA
AAGAAATACATGTCATCGTTACGTACCGTAGAAATTATGAAGTCCTCCTTTATCATGAAG
ATGAAACACGTACCGTTTTCTAAGTAAGGAAGATGGTCGCACATACCCCTATCATGGTGC
AGTAATTGCACTCATCGATCCTATCATCATCGGGAATTTCCTCTGTTCATGACTTGAAGA
TTAAAAGACGACGACAATTATACGAGGAACTCAGCACACATATCACTATTCAGCATGGGT
TGACTTTTGGTTTGTCGAGGCTTCCTTGAAAAACTCTCATATCTCATGATGTATATGGTG
GGCATTGTCTCACACTGATATGGTGATGTATGTGGTGGACACTCCCTCTAAGTTGGGTGC
CATGACTAGAGTAGCCTAACATCATCCTAAGTTGCATACAATACTTTTTTAGTGTGGTAA
ACAACTTAGTTTCATACACTACTAGGAAAATCCTTATAAGCAACCACTTAGTAGTGGCGC
GGGTTATGTGGCACGTGTTGCTGCTAATTAGTAGCAGTGCAGGGTATACATACCATGCTG
CTACTAGTAGCGTGTGTTATAAACCCCGCGCTGCTACTAAGTGATCTCCGTTGTGATCCC
CGAGATATGCCATGGTAGTAGCTTGGATGGTATAAAATCCGCAATGCTACTAAGTTGATA
GTAGTAGCACGGGGTATAATAGTAGTGCGGGGTATAAACCCCGCGCTACTACTAAGTGAT
CTCAGTCGTGTCCTTCGAGACATGCCATAATAGTAGTACAGGGTATAAACTTCGCGTTGT
TACTAAGCACATGTTTTTTAACCGCCCTGAAATCCTAATTTTCTCCCTCAAATATCTTGT
CTCTCTCACGTCCCTCTCCCCCCTCTCTCCATAAGCTCTCCCACGATGCTCATGCCCAAT
GGGAGCCTCCTCCTCCATGGCACCCAAGGAGGCCACTGCCTCGCGCCACGGGCATCCAGG
ATCTAGCCGATCTTTCCCTGCACCTCCATGCCACCACGTCGGAGACCAACCTCACTCCTC
CCTCCAACTCCTTCATCTCCCTCATTTCTATTTTACCTCTCTCCCTCTGCTTTGACACGC
CCTCCCATGTTCATGCCCCTGCAGGTTGTCGCCATGGACGACCAAGAGCTCTGAAGCTTG
GCCGCGAAGAGGAGCGCCACACCGCCGCTTTTCTCCACCCTGGATTTGGTTCCTCTCCAA
CAGCCGGCGTCGGATTTGGTTTGTCGCTGCCCGTCCGCGCCTCTCGCGACCGCTTCCATC
GCTAGATCAAACCATTGCCATCATTGACAGCACGCACGGGGTCGGGTTTTTTTTAACTAA
TAGTAGATAACTAGTAGTAGCGCACACACCCATGCTACTACTACCTATTTAACCCGCACC
GCTACTATGTTTTTCCCTGATAGTGATATATAGGCAACTTAGCAACATTGACATATAACT
CTTTAATGTATTGTAGGCAACTAAAATAGTACTCGAGTAAACTCAGAATTAATGATAGGC
AACTTCGAAAGAAAACAATCATAAGAAACTTCATAATATTGTACGCAACTAATTTGCAAT
GTTAGAAAACTGAACAACAATGGTAGATAACTAATTATCAATAGCAGTTAATTGGAGATC
AATGGTAGGCAAATTTTATTGTATTGTGGGCAACTGGGCATCAATGATAGGAAACAGAAC
ATCCACGGTAGGCAACTAAGCAACCATGATCTGATCAATGATAGGAAAAAGTTTATACAA
CTAAACAAGCGTGTGATCCATGTGTGTTTAAAATTTCAGGCCAAAATAGAAGATCTGTAC
AAAAATGATAAAATCATGATCTGAAAAGATGAATAGTGTCATTTGTTAAAAAGCTTTAAA
TTTATCTTTTTTGTATAGCCCTAATTTCAACGTATTTAGTTCTAAAAATTTACACACTTA
TGTATTATACCATCATCTATTTATGTTTTTTTTTTTAAATTTGGAATGTTAAAATATAAA
TTTTCATAAAATTTGAAGTTTGAATTTGAAGGCCTCCATGGAGCTCGGCCTCCAAAAGCA
ATTTCCGGAAATAAGCACCTTTTAATGATACGAGAACCTTTGGGACTGATTAAAAAAACA
TTTATGAGCATGTATGTTAGCAAGCATCTAAAATTAAGCCTCATCATATGCATGCATTTT
CAGCAAAATCTTAAGGACAGCGTGGCCTTTTGTCAACAATATATCTAGCATGGCCAAACA
CACAGAAGTAAGATGTAACTCCTGACTCACTCCAATTCTTGGCATTGTCAGCCGACGAAC
GGGTACTTGCAACATAGAAGCAAATCCTTCATAAAGCAATGCCATAAACGCCATCAGCAC
TAGAGAACACAACGCTAGACTCCAGGTCCAACAACAAATCAGGTAACAAAAAAAATGTAA
ATTGGCATATAATCCAGAAATAAGATGCTCCACCAACAAGTTAGAAATGACTGCCAAAGT
AGGCAGTGGTAACTAGCTCAACAACAAAATAGGCCACTTAATACCACTGATGTATATACA
CAAAAGACCACAGTTTAGAGGCTTGCTAGTCTTGTACCAGCGTACAGGAACACGATGGAA
CATAGTGTTAGTACAGGATTAAGTAGCAGACAAGTTCACGATGGAACATAAGACTATTCA
CTCTAACCCATCTTCAACAAGCGTCTTTAACAAGTTTCATGCAAGGCATACATGTCCTTA
ATTTGTTTCCATAAGGCTCTATAGATCCCCTCGGCTTGATAAGATGCTGGCTTTCAACAA
GGAGGGACCAAGCTACAGTGATCTCCACTTCACAGTTACCAAGCTTACAACGTCCTTGAC
TTACGTTGCTGGATTGGGGTGTGAAGTCAACACTTCCAATGTGTTCTCCAGCCTTTATGA
AAACTGACAGCTCTCCTGTGGATTTAACAGACACCACATTTCTGGACAGCTGGAGGTAAC
CCTCTCCATCCACCGGCATTGTTCCAGCTTGTGAATCAAGCAGCAAAACATGCTTAGGCG
AGCACGGAACACTAGATTTAGTTTTGTCTTTAGATAGTGCTGAGCAAACAATGCCATTTC
CCCAAGGCAACAAGCCCTGGACAGCGCAGACACTGAGGATTGTGGCTTGGACTGATTGTT
CAAGATTCTCACAGCTTAGCACTATTGTGCAAAGGCCCTGGAGGTGACTATCACCATGAT
TATCATCATCGTAAGTGAAGGCTTTACCGATCAATACTGCATCTTCAGACTGCACTGTGC
CCTTTAGTTGTAGTTGGACTTCAATCATAACAGTGTCATCAGACATAATTGCACGAGAAG
GGCCAGTCAAGTGCAAAAAAGGATTCTGCAAGCAACATTATTCATCATTAACTTGTCAAC
AAAGCTGCAAGCCGTAACAAGAAGAAGAACAGGAAAAAAATACGCGTGAGTACCTCTTCC
GTAAGGATTTGGCAATCATCCCTAGTGCGAAGGAAGAGATGGTTGCGGCGATGGTCCACA
ACATCTCGGGCAGCAACTACACCATATACATTCAGTGGCCACTCGAGGGGGATCCCTTTT
GTTTCTGTGACTTTAATGGAGTAGATCTGCATCGTCCTTAAGAATTTAGCATCCATCAAG
GTTTGGCCGGCATTGCCTGGCATGTAGTGGGTGAACTGCATTGGGCTGAATAAAGCTGCA
CGCAACCAAGTGATGTGTTAGTAACGTGAGCTAACTAAAAGAGCACACACATTGCTTTTA
CGATCCATTCAAGAAAAACAAAGAAGAATCAATATGTCAAGTACTTAAAGAAGAATAAAG
ACGAATCAATATGGTTGCATACTACATGTAAATCTCCGCACCTACAAGACGAATTAGATT
ACTTGAGACATGGAATGGAAGTAAGGAGAACAAGAAAAGCAAACTAACTACATACAAGCA
TGTTTACTCACTTGGGTCTTCAAAGTTGCAACCATTGCCATGTCTACATTCCCAGCGTGT
ACGATAAGCAGCGAAATGGTATTCCTCAGCCCTCTTCTCCACCTCGTACTCACGCACATC
GACATCCTCCTCCTCATCCACCTCTTCCTTATCCTCATCATCATCATCCCTTGCAAGGAC
AACTTCATCTTCCTTATTCTGCCTCATTACCACATCCCCATCCCTTGTGAGGACATCTTC
ATCTTCCTTATTCTGTCTCATTGCCACATCCACATCCCTTATGAGGATAGCTTCATCTTT
CTTAACTTGTCTCATTACCACTACCAATTCTGGCACCCATGCACAAAGCCTGTCAATGAC
TGCAGAGATGGACTTCAACGTGGAGCAGCAGCGTACAAAGGACTCGTCACAAGTAAACAT
GCAAATTGCTAGAAATTTCAATTCTGTCGAGGATAGCTGAGGCATGGAGTCCCACAGGTC
ATGGAAGTGCCGGGAGAGCAAACCTAATTTGAAGTCAACCGCCCTCTCCTCCATCAAGGT
CTCCTCCCCCTGCGCCTCAATAAAGTTTTTGACAGATGCAGCTATGGACATGGATATATT
GTCCGGCAGCTCCTTGAACAGCTCCTTAACTGCCTGCAGCTCCTGCTCACTGAACCGATT
GGAGATCGATTTGCAAATCTTGCTCTGCTTATTCACGGATCTGCTCTCGTTGCTGGTCCT
CTTGGACGACTTCCCTGCCCATTCTGTCTTAGCGTCCTCGGCAATCTTGCTCTGGCTATC
CATCGATTTCATCGATCGGATCCTCTTCTCAGCCTTCCCTTTGTTGCCGAGCCAACAGGC
GTTCTGCTGCGCGCGGACCTTCCTCTGGGTCTCGGATTCGGCCAGACGTAAGAGCTTCTG
CAACAACTCAGACATACCGGATTTCAACTCCAACAGATTCTTGTGATCCGCGGAGCCCCC
GCGACGTCCAATCTCAACCATCTTATTCTCCTGGGCCTGGATCCAGAGGATACTCTCCTG
AATGGAGAGTGCAGCCATGTAGATTGCACTCTGATAGAGCTCCTCGCTTAACACGGACTG
GCCACTCCTTCTCTTCCAATGCCCTGCGGTCGCCGACTGACCGTCCGTCGCCCTTTCTTC
TCCCCGCCGCCAACCGCCGCCGATCATTTTTGTTTGGGGGAAGGCAAAGGTACAGTGCAG
GCGGGGATTGGTTATATACAGCCCCTCGGGCTCGGCCTAGCCCAGTGTGCCGGCCAGTGG
AAACCCAACTCTTATCAAAATGGGCCAGCCCACGTAAGTCTTTTTTACCGTGTTTCTTTT
TTAGGAAACTTCCATGAATGTTCTGACCTTTTTTTCTGGGCGGGTTACTTCGTTTCTTCG
GGTTTTGTCGCTTTTTCTCGTTTATTTTTAATTATTATTTTTTCATTTTCTCTTTTATAT
TTCTTTTTTATTTTCCCTTTTTCTTCTTTGATTTTCTTTTTTACTTCTAATGAAATTATT
AGTAAAAAATGTGATGAAATCAGTGAACTTATCACAAACTCGTGACTTTTTTCAATTCAT
GTGAATCTTTTTTTAATTCGTGAACTATTTTATTTTAGCGATCTTTGTTCAAATTTATGC
ACTGTCCTAGTCTTGAACTTTTTAAAAATTCATGAACTTTTTCGCATATTTCATTAAACT
TCTTCAAAAAATTGAACATTTTTTAAAGAAATATTAAATTTTATCTTTTTCAAGAATGAC
GGGGGATAACCCCAGGGTAGGTCCATCGAGCCTACTCCTTTGCCTTCTACCTGAAAGGAA
AAGCACGACTCATTCTATGCGGCCCAATCCCCGTGGCCGGCTAGGGGCGAGACGGTTGAA
TCTCCCTGGCCGGCTAGGAAGCTCCTGTCGGCTAGGGGCGAGATGGGTACCTCC