morexGenes - Barley RNA-seq Database

Contig contig_76080
Source Contig contig_76080
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_76080 (7453 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_76080

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_77536	2	800 bp	MLOC_77536.1	Available	Available	LOC_Os07g44180.1, FRAME:-3, EVALUE:3e-20, 13107.m04647 protein OsRCI2-10 - Hydrophobic protein LTI6A, expressed
MLOC_77535	1	794 bp	AK361902	Available	Available	None
CDS Structure of MLOC_77536

CDS Structure of MLOC_77535

Contig Sequence (7453 bp)

>contig_76080 7453 assembly3_WGSMorex_rbca.fasta
GCGATGATTGCTAGCCTTGCAGCTGCTCCTGAGCCTGAGAAGGTAAAGGCGGAACAACAG
AATGTGGTGCCAAGTGAGGAGGTCAAGGAGAAGAAAAAGAGGAAGAGTGATGAGGATGAT
ATTACTGCTTCTACACCTGCAAAGAAGATCAAGGCGGAGGAGGTCACTGAGGCAGTGGAA
GGGGAGAAGAGTGAGAAGAAGAAAAAGAAAAAGAAAGACAAGGGTGAACCAGGATCAGCT
GTTTCAGAGACAGTGAAAGAGGAGAAGAGCAGTCTGTCTGATGAGGAGAAGGGTGCTAGC
GAGAAGAAAAAGAAGAAGAAGAGCAAGGAAGGTGGTGATGATGTGGCTCTAGAGAGTGCG
GAAGTTGAGAAGAGTGAGAAGAAAAAGGACAAGAAGAAGAAGAGCAAGGAAGGCGGTGAT
GATGTTGCTACAGAGAGTGAAGTAGAGAAGAGTGAGAAGAAAAAGGAGAAGAAAAAGAAG
AAGAAAGACGCAGAGGAGGCGGCACAATAGGTAGGGTTAGTAGTTTATATCGGCTGGTCA
TGTTATTTGGTTGCAATTGTGGGGGAGTTTGAACTACCTGTTTTATTTGCCCTGTACCCA
TTGCAACCGTCTATTGTACGCCTAATGTACTATTGTTAGGTTACTGCCATTGAACCGAAA
TGCTATGGTAATTACAGAGATTTCCCATTAAATTTCTTGGACAATGAAGCTTGTTTGCTA
TATTTGTTATCAGTTGATGCAATTAATTTTGCTATCATCTCATTTTGGTAGTTCCCTCTA
GTGAAATATCTGGCTTGCTAATCCCATCAATCTGCTGTTTTCTGATACTTAGCTGAAGTA
GAGTCTACCAGTCCTAATATTTCCACCACACTGATGTGAGAACATGCTTCCCTATGTTGA
TATATACTACATGCTTGCAACCACCAGAAATCTATAATCATTCTGTGCACAGAGTATGAA
ATTCTATTAGTGGCATATATATGTTTATGGTAGGACCAGAAGATATATGTTTGTTCCTGG
CATGGTTATTGAAATATTGATTTATCCTATGTTAACACAAGTGGCATATTTGTGGTGCAT
ACCAGCCTAGTTCATCAGATTTTAGTACTCCCTCCCATCCGAATTAATTGACGCAGCCTC
TGTAAGTTTACATTGTTTAGTGGCCGCGTCAATTAATTCAGATCGGAGGGAGTATGTTAT
TTGTTTGCAATTATGTAGTATCTTTATTATTAGGTTATAATACCACTCAATTGAAATGAG
GCATGCATTGCTGTGTGTGTTTTCAGTTAATTAAGTGAAATTTGCTGTCGTCTCACCTTA
GTAGTCAGCTGTACTGAAATTGCTGGCTTGCCAATCTTCAATCTGCTATCTGCTGACATT
GTTAACCTTACATAAGTAGAAATAAGTCTAGTCAGAACATTTCCACCACGTTAATGTGTG
AACTTTGTTTTCTGTGATGGTTGTGACGATGATACACAATCACCCAGGGGTCTCAGGCCT
GCATTCCTGTGCCTGTTATCTGTTAATTCAATGATTTTTGTTCTCACCTCATCTCAGCTG
TCTAGAGTCTACAGCTCTAATATTTCTGTTTTGTTGTGGAATATGATCTGCCTGCTGTTA
TAGTGGAGCCAAAGTGAAATTACTTAGTCCATGCCGATGTGACAGCTTATAGCATCCTAT
GTTTGAATACATGCTCACAATCAGTCATGAGTCACTTTTTTGGCCCTGAATTCATTGTCT
GCACCTAGAATCTGGAATTCGGTGAAATGTTGGATTGAATTTGCCAGTTTCACCTGTTTA
GTAGATGTAGCATGTATGGTGTTCCTCTCAGCTTGGTCATATCAGCCTTTGTTTTGCTGC
TTAGCATCAGCGTGTGCTATATGTATGGTGCATAACAGCATACCTGATAATTCTGTTATA
GATGGCATGACCAGACCAGGCGTATTTTTCTTTGCTATAGATATCTGGGGAACGTCCACT
GTCCCAGGGAATGCCCCCAGAGCTGTCTGATCTGATCATACGGTGGCTGTTTTTGCCAAA
AACTCTCTGCAAATTAAACAAATAACAGTTTTGTAAAATTCCATCCCCAGCTGCCACCAG
GGACATTGACGCTTCTCATCCCCGAGAATTAGTTGTCGCTCCTTCAGCTATTTGTGAACT
CAATGCTGCGCAAAAGTATATGCCTGCATGGAACCGACGTTTTCTGGTCTGGTTGGTGCG
TGCGGTCTGTGCAATGTTTTATCTTCTGCTGTGCAACGTTTTCTTCAAAAGAAATTTTGG
AACCTTCGTTGCTTTTAAGTTTAACACGTAAGTTGCTGCCTAGCCTTGGATTTCCTCGAA
ACGACTACGTGGTTCCTCACCCAGTTTCTAGCCATCCTTTTCGGGGAGCTTTTTCTTGGA
TTCATTTTCATAGGTGATGGTGGGAATTGACAACATTGAGCCATTTGGGTGAGCATTCAA
CTTCAACCAAACAATACATGAAATGAAAATGCTTCTTCTCCGTCATATATAATCAAGAAG
TTGCATTTCTGATCAACAAGTTGCATATATGATAAACTACCAACACTAGAGCATACCCGG
TCAAATGGCCAACACATGTTGCATGCCGGCTAAATGACCAACACACATGGAGCAAAAAAT
ACTTATGAACTCTTGAAGTTCCGCGCCACTTGGCCACCGGATTTGCAATTGTTTTTTTAA
GTTGCGATATTTGTTGGTAGCCTCTTGAATGGTGTATGATCGACGAGTGAGCAACTTCTA
ATTGCCACTTCCGTGTGATAGGGATCATAGTGCTTTTGCTTATGGAGCCAAACATGCACA
ATTGTCCAAAAGGTTTCGTCCATTTGCTCCGTGCCATGAATTAGATTAATGCTTGTGGTC
AACCACTCATCAACCACTTGTCGTCCTCTGGATGGCTAGGTGTCTGACATCGGAGTGTGC
GTCTGTTGAATGTTTGGATCCGGCTGTGAATCGTCCACTTGTCATCCTCGTAGCCGGCGT
TGTCATGCATGATGTTCATCCGTGCCTCCCCATCCATCGTTGCACCAGGTTGAGACACTC
TGACAAATAGAGACCATGCACCAAAGGGCAAGGGAGACACAACCGACATTCGGGACCAGA
CAAGCATGAACAACTATGACTTTGGCTCTCTGAAGGTGTAGTCCCACTTGAGGCCAACAC
TGAGTGGCACTTGATGACCGTCGGTGATGTCGGCAAGGGCGGCTAACATGGTCTGGATAA
AGCAGTCCAAATATTTATGGCCGATTTGATGAACCGTGTTAGAGTTGCCTAAGGGCATCT
TCAACACTGACCCGCAATTTTGCTTTGTATCCATATCCACGTGTAATGACCACCTTGCCT
TCAACTCACCAACTACGTGATAAAACTTGGTGACGTTGTTCTGGATGACGTATCATCGAT
ACGATAACGACCTCACATTGCGATCACGGATGATGTCACAATGTGCTTTCATTCGTGAAA
TGATTCATGAACTTGGTGCCAGAAGGTCCCCTCTGTGTTCCTCCCTACGAAACCGTGGAT
ACGACCAATCACACATCGCATAACAACTCATCCTCCATGGTCAACTACCCCGCCATCCTT
CTTAGTCTAAGAAAATGACATGACATGACGTCTGAAAATAAGCTCGATGGCATTTGATCG
AATAACCGTCGGGCGTGGCGGCCGCCATGGAGATCGCCGACAGGGTGGCGGAGTGTACCC
GGGCACAAACGGCTTCAGGGTGGACATCATTGTTGTAAAAGGCGAGCGGGCACGTCGATG
CTCGTTGGGAACGTGTAACAATGCCTGTGTGACGGCCGGAGAGACACATCAGCGATGGCG
GAGGTGGAGGATGTGGATGCAAAGCAAAGAAGAGAAGTGAGGAGTGAAAGAAAATGGGTG
GGTAGGGCAGATTTAGTGGGCCTAAGGTGTCGGAGTCCAACGTGGATATTGTCCGGACTT
TCGTAACACCCCTCCTCTCACTCTGTCTCCACTAAAAAATATGTTCGTCGAACGGATCGA
TACAGTTACACATTGAATGATTTTCCACAATGTAAACGCATATATATTATTTAAGGGTCG
TTATTGAAGATGCCTTAACACCCGTTGTAAGTTAGAGAAAGTATACTCCGTGTTCCTTTC
ACCAAGAATGTAAATACTCGTGACGCGTGGTGTCGAGCGTGCATCTAGAACCATATTTTT
TTACATTCATCTAGAACCACGTCTTGGTGAGATGAAGGTGTGGGCACTGGGCAGATACAA
TATTTACGGTTATGAATTTAGCTCATGATTCCTTCCTAGACGTTTTAAGTTGAAACTAGA
TCAGGCTAGCGTGTGGCGCTCGTACACTAATCCTTATGCTACTTTATGAAAGGAATTGGA
GGAACTCCCAATTACCACAGATCAAAGAATTGCTCTTGGTATGCACCAATCTTGCAAGGA
CAATGAAGGTTTGCATGGTTGGTTATGCAGTGCAAGTGACAAAACTTTTGAAACTTGGGT
TTGGAAGTTCTTTGCCGACGAAGATCATGTTAGAAGATAGCAACCTATGAAGTTCTCTAG
TTGCTAAGTTGTGATGTCTAGAAGTTGGCTACTTGTGAAGTTTAGAAGATGGCAACTTTT
GATATTTAGGAGAAGATAACATGTTGATCTGTCAGCTTGCTGTCTTTGAGAGTTGAACTT
GTGTCTTTTGGGAAGTACTCCCTCCGTCCGAAAATACTTGCCTTAGAGATGAATGTATCT
AGACTTATTTTAGTTATAGATACATCTATTATATCCATTTCTAGGACAAGTATTTTCGGA
CGGAGGGAGTAGATCTTTTGATGTGTAGTGAAACACTCTAATGTAACTAGGTTGGAACTA
GTGATATTGTTATGACTATTATTAGATTTTATAATGATGGCTGGAACTTGGATGTATCTA
TCTTATTTTCTATCTTGACTATGAATTGCATTTATGGGAGCATGTTGCAATATGATTGAG
TTGTAAGACAAATGCCAAACAATCGCACCACTCTTATAAACACATGTGGCATGAGTCCAA
ACACAAACCATAACTTTTTGCCAAACATTTGTGAAAGACATCCAAACGCACACCACATAA
AATCTGCCACACCTAACCTAAGACATGGCTACCAACCAAACAGTTTGATTTTGCCACACA
TTATGGCAAGCCACAGCGTGGCAATTTGAGCCCCAAACCAAACGGCCCCTGAGTCATACA
GTATATTTTCCCCACGTTTTCCCTGCCGTGCGTACATCACATCGGGGACACTGGCAGTCT
GGCACTAGGCGCCACGGTGAGCTGTGCGGCCTTGTGCGATGACCCGGCGCTCGTGACTCT
GGCACTTGTCATCGTTGCCTCTTGGAAACGGCATCGGGAGTTTTTTATTTTTTATTTTGA
AAGTTATACCGGAAGAAAATGAAACAATAAAAAATAGGACCTTTGACTTATACTAGAAAA
ATAAAGAGAAAGAGAGAGACCGCAGTGCAGCCAGCCACTCCCAGTGCGAAACGTGACGGA
CGCTCACTGACCCCCCCGCTCCGTGATTTCCTCCGATCCGTCACATCCGTTTGAACCTGA
AACTTATCCAATCCAACGCTGCAGCACGAGAAACTCGCCAACATACCAACCAATCGGGGG
CGATGCAAAAAAAAATTAAAAAATCTGCGCAAGGAACGCTCGAGAACAATCGGAAAATTT
CTCCACCAATCAATTGATTAATTAATTAATTCATCAAAGTACATGGACGACGAAAATGGA
CAGAGGAACAACTGGATGCATGGATACACTGGGGAAGGCGACAGGAGGAGAGGAGTCTAA
TCATCAAGCAAGAACAACAAACAGATGTACAACAGCATGAACACACAACGCGTACGCAGC
ACCATGGATCACCTGGCTCGCGTCTCGGACAAACGGAACAAGTTGGCCATGGATCACCTG
GCACAAACAACAAGCAGAGATCAGTCCGGGAATTTCCATCGCAGTTCTCTGAACCAAATA
AGGATGGTTCCTCTGTTTTCTTTCGAAACAAAAAGATGGAAGCAACGGCGGGCTGCAGGG
CGCTTCTCTTTTTGGATTTGCGAAATCCTTTTTTGCTTGGAAGAAGATGCATCCTTTTGT
TGTGCTGTTAATACGGCGCCCTATGTTTGTTTGTTAGGTTTTTTTTATTTACAGTAGATA
AAAATTGCTTTTGTAAATTCTACGGAGGACTCCACTGAAGAGAGAAAAACCGGGGGAAAT
GACAAGTTCCCCCGAGGTGCATGCATACCTAGAGACAAGCAGGCAGGCAGGGGCGGCTAC
TTGGTGATGACCCAGACGGCGTAGATGATGCCGGGGAGGTAGCCGAAGAAGGTGAGCAGC
AGGCAGATCCAGAACTCGATCTGCAAAGCACGAGCATCCAATTAGCCACAGCCCAGTGCA
TGCATAGTCCGTCCGTCATGAGATGGCAGCCCGGGACAGGGATCGGGCGCTCACCCCGCA
GGCGAACTTGAAGAAGACGCCGAGCGGCGGCAGGATGATGGCGAGGATGATGTCGATGCA
GTTGGCCGTCCCCTCGTCCGCCATCTTCCTTCCTTGTCTCGAAGCAGTCGAAGGGAGAAC
CCGAGGCGAGAGGAGAGGAGAGGAGAGGAGGTTGATGGAAGAAACTAGGAGAGCGAGACG
GCTAGAGGTGGAGTAGTAGAGTGATGATGCGGTGGTGCGACGCCCCTGCTGATTATAAAG
AGAGACGGCGAGGCACCACGCGGGGCGAGGGCGCCGGTTGGCGAGGTTACGTTACGTGCC
CGGCTCGTGCGGCGGTGATGATGCTCATGCTCCCACGAGCGCCAGACAGGGGGGTTGGAT
CGGACGTGGGAAGAATCGGATGCTGCGGCCGGCCGGTCCTCGTGCGCGCGCTTCGCTTCG
CTGTTGCCTGTTGGTTCGGCTCCAACGGCTGGCGGCGACCCGTCCGCCCGGTTCCGTGCC
CGCTTCTCTCGCGTGGACGCGCCTTTCAACTTTTGACGTTGAAGGCTATCATTTTTTTTT
CTTTTGCGGGCAAAAGGTTATCAAGTTCAAAAAGAAAGAACGTTGAAGGTTATCCTTATT
CTTTTATTTTTGAAGGGACGTTGAAGGTTATCTCGACTCCGGGTGCTATCTGCTGTACTA
TCTCAGCCCCAAATTTGACTGTCAAAACAAAGGACGCGTTTGGTTGCGTGCATTACATTC
AAAAGACCCGTATAGAATGAAAATAGGCTGTTTGGTAATATGCATTCACTGTTTGGCCCG
CATAATACAAACCTCAAAGCACCTCTCAGCCAGGCCCGATGGGAACGGCCGAATCGAACG
TTTTTTGCGAGCCAAGCTCGAGCGATGCAGGGGAGGGGAACGTCGTGCCGCGCCGCGTAG
GGAAGGGAGATGGCGGGAGCGATGGCGCATCTTCGAAAAAGTGGCGAGACGAATTCGAGT
CATCGCCCGCCGA