morexGenes - Barley RNA-seq Database

Contig contig_75700

Source Contig contig_75700

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_75700 (3492 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_75700

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_77452	2	1657 bp	MLOC_77452.2	Available	Available	LOC_Os01g53730.1, FRAME:+3, EVALUE:4e-61, 13101.m05631 protein expressed protein
MLOC_77453	1	2201 bp	MLOC_77453.1	Available	Available	LOC_Os01g53720.2, FRAME:-1, EVALUE:2e-109, 13101.m15073 protein expressed protein

CDS Structure of MLOC_77452

CDS Structure of MLOC_77453

Contig Sequence (3492 bp)

>contig_75700 3492 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGAGTGAGTCGAAGACAATGGGAGAAAGAAAAAAGGGGCCTACGT
GCCACCGACTGTCGGGTCGGAGGAAAAGGACAGGCGTCGTGCGCGTTCATTTCGTGTCTG
GCCGACGAAATGCGGCCCAAATATTAATCAGGAACGAGAAACGGACGTGCGTCCGTTTAA
ACCACCACGTTGCACCGAGTTTTATATCCACGACGATTCAATCGGATACATGCGGATAGT
CCGGTTGGAGTTGCTCCAACTTGCGCAACGCAAACACACCGGAACGGACCAACGGTGACG
TCACCGACCTCGTGTGGCGCTCGCGTTCGGTTTCGTGGTAGTACGAGTACTAGTCAAAGC
GCACTAGCACGACGCCGAGCGTTATCCCAAATTCCCAATCGCCTCAGCTGCGGCTCTATA
TATGTCCGCCCCCCCTGCCAGATTGTAGAGGTCGTGAAACAGAGCAAGCAAGAGCAACAG
CAACAGCAAGCATATCTTCGTTACCCTTCTACTACTTGAGGCCCGCCCGTCCATTGTCTT
ACCAGAAGCCGAGAAACTTGCAACCATGGGCAGATCTGCTGGAGCTCCTCAGGTCCTCTC
GGCGCACCAGGAAGACGAGGACCTGTTCGAGACCTCCTCCTCCTTCTCCTGCGACTCCGA
CGACGAGGCACAGTTCTCGGACGGCGAGGACCAGTTCGTGCCGGCCTCCCCGCCGGCGCG
GCGACTGAACTCCGACGGCGTCTACGATCTGTCGTCCATCAAGGCCGAGCTCTCCGTCAA
GTAAGTTCCTCAGGAAACACCTTCCTTCTTCATGTATCAACAGAGTAGCAAAATGGAAGT
TTTTCCTGACCGTGCTGATCTTCTCTCTTTGCAGGAAAGGGGGGTTGTCCAAGTACTACG
ACGGCAAGTCCCAGTCCTTCGCGTGCATGTCGGAGGTGAGGTGCCTGGAGGACCTGCCCA
AGAAGAGACCCTACAACAAGAAGATGAAGCCATGCCGGAGCCACGTCGAGATCGACGGTG
ACCAGAGAGCTTGCCCCGCGCCTGGTTCTAACAACAGCAGCAAGGTAGTCGCCAAGCCGA
CCTCCGGGAGCTCCTGCGCAAACCTGATGATGGCGCGGAGCGGCAGCTCCAGCATGCTCT
ACAGGCCTCCCGCCATCCCCGTCAACAAGAGCGCCTGCCATCAGTAGGGAGGGAGGGTTC
GCGGTTGAGACTCAGAGTGTCTGTCCAGGGCTGGCTTCGCGTCTCTTCTTTGTTCCTTGA
GGATGGGGATTTTTCTTGGCGGGCCTATTAGCCTGTCAAATGTAAAGAGGCTTCTGCATC
CATGTTGTTCGAGAAGGAATTGATTGATCCAGTGTGTAAATAGAGAGACCAGTTGTATAC
CAAACATTCCTTCTGATTAACGAAGATTATCTGAGATCCGAATTCTGAGTGTCCAAGCCA
TGGTACATGATCTAAGATCATGCTGGTTATTTCTCAACATAACAAGGGGTACAAAGTAGC
ATGGCTAAAACAGAGAGCATCCCTTGGTTACCAGAGATTGAAGAATGTTTTACAGATATT
CCCAGTGGAAAAAAGAATGGCGTGTCTCCACCGATTGCCAACCAACCAAAAAATGGCTCT
GCCTGATGCTTTCAAGTGTTAAAACTCTTTGCGGGTACTGTGACTGTGACCACAACCCTG
AATGATCTTGTCGATAGATGTTTGAACAAAACTTGTTATTTGGCAACAACACTGGGAAGA
CAAAACCCTGTCCCAGTGCGCCTTGGTGTCAGCGTCTGTTAGAAAGCGTAGTCATAGATG
GCCTGCGCAACTCCATCTTCGTCATTGGTGGCGCCGATCACGTTCGCCACTGCTTTGGTC
TTCTCAGCGCCGTTTGCCAGAGCGACGCCCAGTGATGCTAGCTGTAGCATTTCTATGTCA
TTCTCTCCATCTCCAATTGCCATTACCTGGCACAAACAGGCTGCAAGTTAGAAACAATGC
AAGTCCTGGTAGTATTGGTGATCAAAACAAAATTCAAAATGTTGAGGATTCAACGGAAGC
TTAGGGGAAGTATTATCTATTTGAAATGTGATTTTGATTTTTGGCCATGTTATTTAGAAA
AAACGGAAACTATCAAGATTAGATTTGTAACTGAAGGAAACAAAGAGAAGAAAATGCAGC
AGCATTTGACTTGCACCATGGAAGATGTATATGGGAGCTAGACAACTCATACCTCGTCCG
GACTAATGCAGAGATGGTCCAGCAAAATCTTCACCCCGGTGCCCTTCGAAGTTGCAGGTG
GTACAAGCTCAAGCATATCAGGCTGTGCCTGAAGAACACCAGCCCTTTCTTCTATTGCCT
TTGTCCAGTATGGCCTCAATGTGGAAGAAACTCCCTCAGAAGTTCCAATGAACACTAGTT
TCTGGAAATGAAAATTATAGCATGGTCAAGCTATAACAGATCTTAACATTCTCAAATTGC
TAAATCTTTTCCTCTTCAAAAGATCCAGATATTTTTCTAAACTGATGACTATGTCCATAG
ATAAATGCCAGATGCAATAATAAAAAGAGAAAAACAGCAGCTTATTTGTTCCAGCCATAA
AAACTTGCGAGTTTGGTAAAAAATAGTTGATCTTTGATGAATTATTGAATCCTTGGTTGG
CAACATGGACTTATTTGTATTATACAAATATTTATCAGAATGTGATTAAGAAAATGTCAT
TAATCCTTGCACTGCAAGTTTTGAAATGAAGGGACCTAATAAAAAGATTCATACAGAACT
GATCTCAGACTTGTAATCGACACCAAAGATAATTTTTAAGATAAGCACAGAACCTGTATC
TCAGCTGTTCCTAAAAGCTGATCAATAGATGACACTATTTCAGCCTGCAAGAAGAATACC
ATGTAAGTCAATAAGAGTAGAAACCTTTGGGTTTCACAAAAGAATGGAATAGTAAACCCC
GTCATACCTTAGGTTCATGGTATACATCATGGAGAGAATCAACCAATGGATCCTCAAACA
TAGAAAAACACCGATCCTGGCTAAATGCTACTAATGGTACCTTGTGCTCCATAGAATATA
AGAATGCCTGCAGCATGCCAATAAAGTATCACTAATGTTGCAGCTGTAGAAGCATTTGCT
GGGGAGATGGTTATCAGATGGGAATGGATGATCTTCAATCGTAGGAAAACATAAGTTGTT
GCTTACCTCTCGGCATACTTCTTGGTTCAATGTATTTCTATAAATTTCTCTCCCTTCCAA
ACCATAAACCAACAGCCCCTACAATTGAAGATTTAACATCATGAAAATGGTGACAACACT
CATGGGAATAATCAATTTGCTCTTATTTAGTATTTACAGATGAGAACAACAGTTTATATT
TTTGAAACAATACTACAATAGAACAATCATAACTCGTTTTAATATACAGCATGTGAGGTA
GCATCAAGTTTAGACTAGCATATTAGAGCATCTCCAGCCGCGCCACCAACAGCTCCCCCC
CCCCCCCCCCCC