Map Locations of contig_75422 (9682 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_75422

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_77386 1 180 bp MLOC_77386.1 Available Available None
MLOC_77387 2 2749 bp MLOC_77387.2 Available Available LOC_Os01g15020.2, FRAME:-2, EVALUE:3e-79, 13101.m01663 protein lissencephaly type-1-like homology motif, putative, expressed





CDS Structure of MLOC_77386






CDS Structure of MLOC_77387






Contig Sequence (9682 bp)

>contig_75422 9682 assembly3_WGSMorex_rbca.fasta
AGCAGGTTGGAGACCACCACCGGCGGTGTTTGCCAAGATCAACGTCGATGGGGCAGTCTA
CAAAAATCCACCTATAGGTGCGGTGAGCGCAGTTTGTCGCGACGACCACGGCAAGTACCT
GGGTGCCTCGGCAGTGGTATTTCATGGACTTACCGATCCTCACACCCTGAAAACATTGGC
ATGCCGGGAAGCACAAGCCCTAGCACAAGATCTTCTCCTACAACATATCGTCGTGGCCTC
GGACTGTCTTACAGCAGTACGGGAGATCAACTCGGGCACACATGGGATTACATGCCAGAT
AGTTCAAGAAGTAAATGATGGCATTTCAAACTTTCAGCATATTTCTTTTGTTCATGAAGG
GAGAGTATCTAATAGGGAAGCTCACCTCTTAGCTAAGCATGCTTTGCACTTGGGAGAAGG
ACGCCATATGTGGCTCCTACAACCCTTTAATTTACATGTAATTCCTAACTCCGCATTGTT
GATCAATAAAGCAAAGCATTTACCCCTCAAAAAAAAGGAAATATTCTTCCATGTACATCG
TCAATTTCTTCTGAACCACTCCACGCCTACACACCATGGTTTTGTGCCCATTTTGAGTGC
AGGCATGTCACGTGTGTACAAAGTGCACAAGAGCTGCAATATGCTTAACCAAAGTAAATT
AAACGAGCTGCAATATGTATCTATCATGATGACCACAGTATTTCCGGTCCTCCAAATTAA
CGCCGACCCATCCGTTCCGGAAATTTCAGTTTTCTATTTTTAAACAAGTAATATCATGGT
GTAGCTTTCTGACAAGCTGGTCCACCTGAATTATCATCTATCACCATTTGAATGGTGGGT
AGTGGGTGCTATTACGAAGTACTCCCTCCGTTCGTAAATCTATGTCTTTTTAGAAGTTTC
ACTAGGAGACTATATACAAATGTATATAGACATACTTTAGAGTATAGATACACATATTTT
GCTCCGTATGTATATAGTTCTCTAGTGAAATCTCTAGAAATACTTATATTTAGTAACAAA
GGGAGTATACACCAAAGTAAATTAAACGAGTGAGACTTGGGAGCAACCTAGTCGTTTTTC
AAAGTTGAAAACGTCACTAAACACAAGCTGCTGCCATAAGTTGTAATTTCGTGCCCTCAC
TTAGGGCATGTACAATGATGCTATCTTAGGAGTGCCATGTAGGATAAATGATGAGGTGAA
GGAGAGATAACTCATAAGAAAAGGTTTGTCTTCTCTTATTTGAGAGAACAAGAGGCGTTC
TCTTAGCACAATATGTCTCACCATGTTTTTAGAAATAGCTAGTTATTGAAGGTAAGGCTA
AGAAGTGACCCATTGTAAGACATTTTTTTGTCATCTCTAAATTGCATGTAAGACTTAAGA
TAAGACCATTTTATCAATCATTGTACATGCCCTTACCAACTGCGCACGAGCTACGACAAA
ATACTCCAACTACTGTGGCATTATGTATATTTTTTAAGCTGGGCTGCTAGAGATATTTAA
AACGACATGATTGAACAGAAGAAGATTGCATTTGTTAACTGGTATTTGTTTAGCTAATTA
GAAGGTGCTTCCTCCGTCTTATAACATAAGGACGTTTTTGACACTACACTAGTGCCAAAA
ACGCTCTTAAATGTTCACGTCTCTCTTATTATAAGAAACGGTCTTATAATAATCACTGGT
ATCTGAACTACAAAGTGGATCGTCGGGAAACGACCTCGGGATCTCGCTCATACCAGCTGC
TGCTGCTGAATATTAAAGCATGAAACTCTATAACAATACAAAGCTGGGTTGAGATTTGGA
AAATATATATATTTTAGAAACATTTCTTGAAAACTTAGAACAATTTCAAATGCTGCAAAT
ACTTTTGTTATTTCAAGCTATTTTTTCTGAAAAAATATGAACAATTTGATAATCTGAATT
TCGAAAACACGTCCATTTCTTGCAAAATGTAACAGGTTTCTAAAACGTGAACATTTTTTA
AATATTGAACATTTTCTGGCATTGTGATATTTTTTGAAAGTAAGAGACATTTTCTGAAAA
TCCTGCGAATTTTTAGAAACACGAACATTTTTCTGAAATTATGAACAAATTATGAAAATA
AGAACACATTTTTAAATTCATGTACATTTCCTGAAACAAAGACATTTTATGCATGACATC
CTGAACAGATTTTGAAAAATAGAATATTTTCTGACATTTCTGAATAATTTTTGAAAACAT
GAATATAACAAATTTGAAAACGAGAATATTTTTTATATTACTGAATTTTTGAAAAAACAG
GAACAATTTTTTCGAATTGTGAACAAAATTTAAAAACAAGAACATATTTTGAAATTCATG
AAAGACTTTTCGAAACACGAAAATTTGAAAATGTGACCAAAAAACAATAAATGTTTTGTA
AATTTACGAACAATTTTTTTAAAAACAGAAGCATTTTCAAAAACAGGACATTTTTCAAAT
AATGACCAACTTTTTTGAAACATAAACATTATTTGAAATTCCAGAACAAAAGTTGGAAAA
GGAAAAATATTTTTTAAATTCCAAACAAAATTTAAAAACATGAATATTTGTGAAATTAAA
AAAGCTAAGACATTTTTTGTAACACCTAAAAAATAAAAAAAATGTGAACATTTTATTGTA
TTTATAAACAAGTTTTCAATTGAACAATGTTTTCAAAAGCAATATTTTTTGAAATCCTAA
ACATTGTTTGAATAGTTATGAAAGTTTTGAAAAAGACAATGCATGCTGAAAAAAAACATT
TTTGAAATGACTGAAAGATTGGATTTAAATGCAAACATTGTTTTGTAAACAATTTCTGAA
ATCATGAACATTTTTGAAATTTGGATTCTTTTTCGAAATCATTAATTTTTTAAAATTTTC
CAAACAATTTTCGAAAGATGAACTTTTTAGAAAAAAAGAAGAAAATGAAAAGAAAAGAGA
AGAAAAAAGATTCAGTAAAAGAAAAGAAAAGAGAAAACCGAGAAAAACCAACAAAGAAAC
AAGAAAACCTGATAAAGAAACAAAAAACTATGGAAGGAACCTTCTAGCAGGTTCCCAAAA
CTGTTCGCTAGCGGTTGTTAATTGGGTCGGCCCATTTCTATCGCTGCCAGGGGTTCTGCC
TGTGCGTTGCGTCGACAGTTCGACGCAATGAGAGGCAAATAGGAAATTATGTGTGCAATT
GTTTGCATGCCCACAATGGTCGGTTAGATGGGCAGCAAGCCTGCAGCTGTTTGCTAATCT
AGTAATTTGCTATTCATTCCAACACGAACAAGCCATGACGTCTATTTCTCGCATTAAGCG
AGGCAAGAGGTAACTCTCTCATCAAGGTTTTTATCTTTCTGGTTGTAACTGGAGCAACCA
AGTTACGCTTGCGTGACAGTTCCTTTTATCCCCTTCTCCCCCTCGACACGGCACGATCAA
GCCCTCTCTTCATCTCCTCTTCTATATTCCCCCCCCCCCCCACCAAGTCGCAGCGCTGGC
GGCTGCTCTCCTCGATGAAGGCGAGGGCGGCCAGGGCAGCTTTGTGTCCGCGTTTTCGGT
AATCTCTTCTTCTCCTTGTCGGTTTTCTTCTCCAGATTTCGTGGTGAAGGATTCATCTCG
GGAGAGGTATGCGTCGTCTAATTGGTTTGTTCTCCAGTTTTCTCGCTCATTTGTGGGCCT
GGCCGGGCTTGTAGCGGGCCGAACTCCCAGCCCCCTAGCCGGTCCTGAGGTGACCGAGCT
AAGAGCTCGACCTGATGATGTAGTGATGCAACACAGTTGATGTGGCGAGGTGAAGCCCCC
GGTCCAGCTAACATGATGAAGTTGGTTGGATGGTGACGTCGTAGTCCCCGGAGCAGGTTG
ATGAAGAGATGGCGAAGACCCCGGTCTAGCTGAGGTGATGGAGTAGATCAATATGGTGAC
TCTAGAGCCCCCATGCCAGCTAACATGTCAAAGCACGTCGGCGCTGTGGACATCAGCTTG
AAAAAGCGATGGTGCGGCTAGGCCGACGCGGGTTGGAATTTGTAACGTGGAAAATGCTTG
CTTGATGAAGCAACAGCGCGCCCGACCCATGCAACCCGCAGATGACGAGTTTCTCTTAGT
GATTATTCGGCCATCGCGTTGCCGAACTCTTGGTCAGCTGACCGAGATGATGAGAAAATT
TCCTCCAAAAAGGACGTCTGACAACCCTTTCATGAAAAAGATGAACTCGAGTCGGATTCG
TTTTCGCGCAGAAAATAGATTCAAAATTTGTTGTACGCATCAGACATGTTTTGGAGTTTG
GACGATCGGATCGACTTGAAAGTTTGAGGGGTCATCGATATAGGAATTCCTCAGCCGAGC
TTGAATCTTTTAACGGATGTCCGAGCTAGATACTGGACACCTCGCCCTAAACTCATCCAG
ATTTCGTCCAGATTCGAGAAGGCTCCGGTATATCGGAGATCGCCGGAGATTCCTCCATCG
AAACGCGATAAAATTTTGCAAGGTTGTTGTAGATTCAATTTCGTACAATTCCACCAAAAC
AATCGTCAAAGCGATGCTAGAGGAAACGGGGACGACGAACATGAATCCGCTGTCCAAGAA
AAACTGCAATCTGCACACGAGTCATCGATCCTTCGGCGACCCCACATCAGAACTCTTAGT
GAAAGCACCAATGTCGATGTTAAAACCGGCATATCTCGGGTATGGGGTCACGAGTTGTGG
ATCTTGGATCAATGGTAACAAGAATAGGGGAGACGATGTTTACCCAGGTTCGGGCCTTCT
TGATGGAGGTAAAGTCCTACTTCATGTTCTTTGTTATGTTGACGATGGAATATCGAATAC
ATAGTTGATCCATCTCCAGATCATATGTTGTGGTCTAACCCCTAAGAGTATTGATGTTGT
CAACGTTATAATATATGATAATAATTATTAACTAACCTGACCTCAGTTTATATAGTACAC
CAAAGGATAGGATAACAAGAGTCCTAGTCGGTGGAGAGAAGTCCTTGTCTTAAGGAGATG
GACCAACGCGTAAGGATCCCTTAGTTCCGGACTTTCTCGGTGTACTAAAGATGGCACCGT
CATTATGAGAAACGACCGGCTCCTGAGATCCTACTACCCTCAACAACCACTTAACTATTC
ATTCAAGCTCCAGATGCCAAAGGGAGTAAACAAATGTAGGAGCTTTTATAATTTAATTAG
ACCGCAAAAACATCTTACGCCTGTGTATAGAAGGAGTAACAACAACCAGATCATAAAAAT
CTTTACCATACAGATCTCATATTCAGTCTTCTTCCCAGCCCCACTACCAAACAAACATAT
TTGCCATAGTAACCATAACATAGGATCCATCTATACAGATACCTTCTGCTCCAATTACAT
ACCCATTGCTGCGGAAAATTGTAGACAAATAGTGTAGGATAATACTCCCTCCCTCCGGAA
ATACTTGTCGGAGAAATGAGTGTATCTAGATGATACATCCATTTTTATCTATTTTTCCGA
CAATTAATTCCGGACAGAGGGAGTATTTCACAAATACAAAAGAGTTCTCATCCACCGGTG
GAAAAATGCAAACCAGTTACATAACATCTTCTCCAGTCACATGACACCCTTGGCCAATAA
AGCACAGCTGAGCACCTCCTGAACCAACACAAAATTCTGCAGTCTAATATGCAAAACTCT
GCTGTCTAATAAAGTGAGCTTGGCAGGAGCATGATCATGAGCAAATAAATGGTTACCACA
ACAAAGTATAGCAAAACAGAACCCCTTGGCCGTCTAGTACACAATTCTGCAGTCAGATAA
TTCTTCGGTCGATCAGCTCTACCGAGGAATGCAGCTCGCTGCTCTGTTTGTTTCATTCTT
GCTATTTTGTCTGTCCTCGTGATAGAAACATCTCTGGGACAGTGAATCCCCCTTGCAGTT
TCTTCAATTCAGCCAAGCACAATACATAGCAATCAAGTAGCTCTCTGCTCTTCAATCCAG
TCAAGCAACAAGACTGACATAAGCAGACACAAGACGGGATGGCTACCAAACAAATATACA
CAGAGTCTTGTGCATGAAACAAAGATCTTGGTCACAAACAGTCGTGGTACCATAACATAG
GAATGCCTGTTCCGATTACATAGCATCTAATAAATCAGCTACAAGTATACTAAAGATAGT
TAGAACTGCAACTGATTAAGGAAATACAGTTCTCTGCTCCTCGTGGTCGCTGACCATCCA
AATGCTTGCGTATATCATCCTTCTTCACACGGCATTGCTGTTATAGAGAAAACGAAGGAG
CAGGATGAAGATAATTTAGCATCGGAATACTTTTCGGCCACTTAACACATCACAAAATTA
AATAAGCGAACAAGACAAGTGGCTAGCACAACTATACTAAAATGTAACGCGTGCTCAGAA
ATCAAATAGTGAATCTGCTGGAGCAATATAGTTTCCTTTAAATGCTATTATGGGTTAAAT
GGCATCATGTCCCAAACGGAGATGTTTCCAATTTATAATCTGCATTCGAGTACAGCAAAA
TTCTGATCATACAAGGAAAAATGCCACACAAACACAAATTACCCACCATTAGCTTGGACC
AACAACTTGCCAATTGTCATACAAAGGAAAATTTTCAGGGTTATATATCTGAACAACAAA
TGATGCGTAAGCTCAGGCATACCTATATATAAATTATGACCCACTAGAGTTCCAGAGTAA
AATATACAATCCATCAACAATATTCAGATTAAAAAAATAAGTAATAACAGATAGCTTGGG
GTTCACAATTCAAAGGTCGGCAGTAGAAAATTACACCATGATTATACTTAAGAAATACAA
AGCTAAATTCCAAGTTTGATGGGTTTGTGATTCTGTTTCAGGACGAGAAAAATATTGTGG
TCAAAACATTAACAAGGCTAAGCATCTTCCAGTTCTTCATATACATGATGTTTTATACTA
CTTTTGTAGGCCTAATTTCTAGTTTTGTGGTGATAGTTCAGAAAACAGTGATACGACTCA
ATTGGAGGTGCATACTAAGAACAGCACACAAATCACTTTTCAGCACCATCACAAACTGAT
GTTATGAGACTTAGTAAGGGGGGACTAACAGTTTCAAGAAGCATTATGCCTAGTTCCATC
CAAAGCTTTAAATAAAAGAAACACACCCACACCCTGCGGTCCAATATTATGACCACAAGT
GAACACTACCCCAGTAAGTTATTTGATATCATTGCACGGCAAGCATTCTCTAATGTCATT
TAGCTAGTTCTGTCAAAAAGGCCTAAGGACAACCATATACCCAACATATTTCCACAGCAA
TACCTAACAGGCAATGGACGATGTACACAACAGAACTTTGTAACCTCCACAAGAGGACAA
AAAGGCAAACCTTGCAGGATTATCCTTGAGCACAGGAAATTTGGGAGGCCAGATCATCAT
AAGAGGATGGATGTCACCCAATTGCAGTTCTTCTTCCGTCATGTCATACACTTTACGCAA
CTGCATGGACTTGACATCTAAGTGTAGCGCGCATCGACCCATCTCCAAGAACACAAACTC
AGCATAGTCACCTACATGGTGTATCTGGAGAGGAGCATTGTGCTCATCCTCAACCTCGCA
CCCTGGGATCCTCAAATTAGCAACCTTGTCACGCAAACAAATGGTGTCCACGAGCAACCA
GTTGTCCCCCTTGTGTAGCCAAATGTGAAGTTGAATCTTCTTGACATGGATGACATACAC
ACCAGAAGCATCATCAGCCCGTGCCAACATGATATCTCTATCACCATACTCCACCCCTTG
CGGGAGCTGAACTGTGGAGATGCTCGAGGCATTCAAATCCAAGACAACAATGTCCTTCTG
GGCGCTCGCTATGTAGATTTTATTGTTAGCAAGCACAGCTTTTGGTTCCTGTCGCAGATC
AAGGAGCTGGTCTATGTCGAAGGTATGATACATGCGCCACACACCATCATCATGTCGCAG
TATATGTACGTGCACTGTTGATGTTGTTATCTGTATGTTAGACACCACTGAAACATGCAA
GTAGGACAAGCCATCGACTTCGTCTACCGGGAGGAGATTGCGGTAAAAGACATCCTGGAT
TTGGACATGTGGGCATGGTGGGACGACAACCAGGCCTCTCTCAGGATACAAAAGATTGTG
CACCCCAACTGTAAATTTGTTGTGATTATTCTGGTTGTGCAAGCTGATGAGGACTCTGCT
GCTCCAGGAGCAGAGGAATTTGGCTGGCGCACCACGGTAGGACTCCAAACTGTAGCTCAC
CACACGGCGGATGACGGCAGCAAGCTCTGGGGGCTGAGGTAGCATTGGGAAGAAGCGAAT
GGAAGCCACTTTATGACCCTCCTTGTCTTCGAGGTAGAAGCCGAGGAGGCGGGACCGGTG
GCGCTCATGGAAATGGTAGAGGAAGGCGGGTTCGGAGGCATGGTGGTACCATCGCTTGCA
GACAAGGGCAGCACGGACAAGAGTGGTGGAGAAGCCAACGCGGACGATAATCTCCCTAAG
AAGGTCATCATCGTCGAGGACTTTGGATACCTTTCCACCACATGCAGCCATCACATCAGA
ATCATTCGTGGAGACTCCAATGCATGGGGTTGACTCCTCAGGTAAGATGGATCGAACCTT
TCTGGCTTGGTCTCGAGTTTCTGACATTGTAGCCACATGACCCACACCAAAAGCCAATAA
AGACCTGAGCCCATCAGTATTTGCAAGTATCTTAAAGCCATTCTCTACTGTAGTAACAGC
AAGAAGATTGCCTTCTTTATTGAACCTTAACCGCGGAAAGCTCTGTTAGAATGTACAGGG
GTTAGATTATTAAGTCGAGAAAAAAGGTTGACAAATATAATAGGGAATTCAGACTAACCG
GCAAGCCTCCATCAGCTTCAATGCAGGTAAGCATGTTGGTGTTATCAGCATCCCAAAACT
TAATTCGGTTCTCTTCACCGGCAGCTAAAATGTGATTATGAGTTGTATCAAACTGCACGA
CACCATGCAGTACACTAGATGGTGTTTTACGGAATCCAGAATATGTCCTTTCGATAGATC
CTTCACTTTGCTTCCACTCAACTAAATGTGAGTCTCCCTCTTTACTTGTTCCACATGAGA
ACAACCTTCAAATCAACAAGTAAAATATTACGTATGAATAACTAGAAGCACTTCTAGTGA
GCAAATTAACACATTTATGTTTACCTAGTTCCGTCGGCACTATAGAGCATTGCAGTACAC
CATTTTCCTGGAGCATCATACTCCACTCTAGAACCCATATTGTCATAAAGCCATGCCTTA
ATTTTCCCGTCAAAGGAAATTGAAAAAATAAACTGCAACGAACACGATAAAACCATATAT
AAGTACACAAGATAAAGTCTGACGTGCTTCAAAAAACAATGCAGTGGCAAATCTCTCTCA
GAGCACAAAATAGAAAATACAGGCATCACCCGCATGTGGCTCATACTGCCACAATTTAAA
CTATAGTTGAGTGGACTTTTGCTGTATACAGACTAAGGAGCAACCAGATATATTCATTGC
ATGCTGAGATGTTAATGCCTAAATATTGTGTTCAGATAGCACACACATGAATATTTTCCA
TGTGATGAGGGCAAATAGAATACACAGGTGCCTCATGCCCTTCAAATGAATATATTTTCT
GTCCATGCATATCCCAGACCTACAAAATGGAAAGGAAGCTAAAAAGATCAGGCTGGGAAA
AAGGAAATACTCCCTCCGTCCC