| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_75232
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_77347 |
1 |
604 bp |
AK251730.1 |
Available |
Available |
None |
| MLOC_77349 |
1 |
3131 bp |
MLOC_77349.1 |
Available |
Available |
LOC_Os02g06140.1, FRAME:-1, EVALUE:5e-135, 13102.m00675 protein retrotransposon protein, putative, unclassified |
| MLOC_77348 |
2 |
1583 bp |
None |
Available |
Available |
LOC_Os02g04070.1, FRAME:-2, EVALUE:4e-40, 13102.m00408 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_77347
CDS Structure of MLOC_77349
CDS Structure of MLOC_77348
Contig Sequence (6170 bp)
>contig_75232 6170 assembly3_WGSMorex_rbca.fasta
TCTGCCGCGCGCGGAAGTGGGCGCCCCAAATACACCGCGCGTCCAACTTGTTATAGCGCG
CGCGGCTTTTGCGCGCCCGCTAGAGCCTCCCGCCGTGTCGCGCGCGCGCTAAAACGATCT
ATTTTTCGGCGCCGCGCTTGTTTTACGTTGTTGTTGGAGATGCTCTGAGGCAATCAAAAA
TTGGAGCGCAGCAAGCTATGGAGGAGTGGTACTTGAAATAAATGGTTTTCTTCTTTTATT
TCTTTCATTTTTAGACATGAGTTTAGAACTTTCGATATTGAAACACATAATCTTGTAAAG
CATGTACGTAAGTTGCGAGTTGGTTGTCATATTTGGTTAGGTCAATCTTGAAACCTCAAT
TTCGTTTCTTCAAACATTGTGATGACATCTTAATAAAGCTGTGTGAGTCTAAAAAAAACC
CTATCCCCTTATCCACTATCGTGTGCCTAGTTGCCAGCCGCTATTTAAAATAATAATAAT
AAAATAAAATCACCAGCCGCTGTGCGGCCTTCCTCCACCCTGCTGCGCCGCACGCCCACG
CCTCGTTCCCCCTGACAGCTCCGCATCCCAGGCGCGCATCGCCATCTCAAGCCGCCGACG
CCCTAGCGGCTGCTCGTCCCTACCGGATTTTCCCCTTCCCGCTATCTGAAATTGCAGAAA
CACCGATTTTCTACCGAACGCGCAGACCTCACCTGCAGGCTCCCTGCTCCGGCCGCCCGA
ATCTTACCCAACCCTCCACCCACCCACATGCGCCAGCTCTAGAGAAGGAGGCGGCGGGTG
AGCGCACGATCGATCGAGTCCGCTAGTACGGGAGCAGGCATGGCGGGGGACGGGGAGGAG
CCGCCAGCGATGGGCGGCGACAAGCTGATACTGCGGGGGCTGCAGTTCCACGGGTTCCAC
GGCGTGAAGCAGGAGGAGAAGAAGCTCGGCCAGAAGTTCGTCATTGACGTCGACGCCTGG
ATGGACCTCGCCACCGCCGGGGACTCCGACGACATCTCCCACACCGTCAGCTACAGCGAC
ATCTACAGGTACGCTACTCCGCCTGCACCCCGTTCCAGTCTCATCATGGTGCTGTATAAT
TTCAGTCCACCTTGCCACTGCTCATCGATCGACCTGCTTGGTGTCGCAGTACAGTTTAGC
TCACCATTCGTATCTGAAATTCAGAATCCTGCCATGCGTCCGTTCACACTGATTACTTGT
AGAACGTTTCGATTGCTATCACCTCAAAACTAACTCTGCGGTTGTTAACAAACCGGATGG
GGCTTTGGTACCCTCGACCTGTAATTAGTCCATTATATATGTATATGGAGTATGTTGCAT
TTCCATAGTCAAAATATTGTTGGTCTGCAGAAAACAAGCTCCACCTCAAGAGGATTGATT
TTGCCTCACCGTATTGGATGGTATAACTGCGGTGGGAGTAGTTTGGCGTAGACTAAATCA
GAATACTGTTGTTTTCGTGTAATTTAGCAAGCATTGTAATCAGATTCATCTTCTCAGCTC
AGTGTACAACCTCTGAGTGGATCAACAGTAAGCTAATCTCTTCCTTTTGGCTTTCCTGAT
GTGGTTTGACAATATTTGCATTGATCGTATGCCTTAGCATATATAGAGTACACGGGCAGA
AATATCTCAACCGTATCCGCTATACAAGGAAAGGATCGGGAGATAAACTAGGAAATAACA
AACATAATCCTAGCTGCCTAATATACGTAATGATCATGCTCAACACCCCCTGCAGTCGAA
GCGTCGCTAGTGACGCACAGACTGGACCGGAACTCCTCGAAGGTAGACGTCGGTAACCCC
TTGGTCATAACACCAGCAAACTGTTGGGCAGTCGGCACGTGGAGGACACGAATGTGTCCG
AGAGCCACTTGCTCAATCACGAAGTGTATGTCAAGCTCAATGTGCTTCGTGCGGCGATGA
TGAACGGGGTTGGCGGAGAGATAGACGGCGGAGACGTTATCAGAGTACACAAGTGTAGCT
CGTGAGGCGTCGTGATGAAGCTCTTGAAGAAGTTGGTGCAACCAGGAGCATTGGGCGACG
ACGTTGGCCACCGCCCTGTACTCGTCCTAGGCACTGGATCGGGACACCGTTGGTTGTCGT
TTTGACGACCAGGAAATGAGGGAAGGCCCGAGGTAAACGCAGTAGCCGGATGTAGAGCGT
TGAGTGTCGGGGCAGCCTGTCCAGTCGTGTCAGAGTATGCGACCAACTCGGTGGATGATG
ATGCTCTCAAGGTGAGCCCGAGAGACATGGTGCCGCAAATGTAACGAAGTATCCGCTTGA
CCAAGTTCCAATGGTTGTCGCAAGGAACATGCATGTGAAGACACACCTGTTGTACTGCAT
ACTGTATGTCCGGTTTGGTGAGAGTCAGGTACGGAAGAGCGCCGACAATAGGGCGATAGA
GCGAGACATTCGGTGCAGGAGAGACACCTAGGGTGGAGAGCTTGGCCTTCATATCAACAG
GAGTGGCGACAGTCTTGCAGTTAAGCATGCCTGCGCGCTCGAGAAGTTCATGTGCATACT
TCTGTTGATGTAGGAAGAAGTCGTCAGAGCGCTGAATGACCTCAATGCCGAGGAAGTAGT
GGAGCGCCCCCAGATCCTTCAAAGCGAACTCGGCACTGAGGTGAGCTGTGAGCTGCGCAA
GAAGTTTGGCCGAGGATGCCGTGAAGATGATGTCATCAACGTAGAGGAGCAGGTACGCCA
GGGCAGTGCTGTGAGAGAACACAAACAGGGAGGCGTCAAAGCGAGTAGCTTGGAAGCCTA
ACTGGTGCAGAAACGCGATGATGCGTTGGTACCACGCACGAGGGGCCTTCTTCAACCCGT
AGAGAGATCGAGAAAGCAAACACACATGGTCCGGATGAGCAGCGTCGACGAACCCGATGG
GTTGCTGACAGTAGACTTGTTCGGCAAGGTGGCCGTGAAGGAATGCGTTGGAGACTTCCA
ACTGATGTACGGTCCAGACACGAGAAACTGCAAGCTGAAGGACAGTGCGGATCATGCCCG
ACTTAACGATCGGGGCGAAAGTGTCGGTGAAGTCCACGCCGGCGCGTTGACGAAACCCGC
TAACCACCCAACGAGCTTTGTACCGCTCTAGGGTACCATCGGGGCGATGCTTGTGGCGAA
ACACCCATTTCCCGCTAATGATGTTGACATTGCGAGGAGGAGGAACGAGTTGCCACGTGC
GATTGTGTTGCAGCGCATCGAACTCGTCCTGCATGGCGGCAAGCCAATGGGGGTTGCGAA
GAGCTGCGTGAACCGGGGATGGTTGGTGATGGTGATAGGGTTGAGATCGACGCCGTGAAC
AAGTATTACTCGGAGGGATACCGAGTGCTAGGTCGAAGGGCACGATTGTGCAACCGAGTC
GTAACGCCGACTGGGGTTGCCGGAACAAGGTCCAGCTGGGAAGCGCGAGAGACCGGACCC
GAGGCGGTCGATGGCGAGGTTGAAGAAGCAACCCCTGGGGTCCAGTCGGCCGAGCCGGCG
TCAGAGACGATGGCAGCAGGCAAGCCAGCTGTAGCAGATGGGCCAGCTCCAGTACCCGGC
AAGGTCGCGCGAGAGGCAGGGCCGGCTGCAGTAGACGAGCCAACTGCAGTACCCGCCGAG
GTCGCGCGAGAGGCAGAGCCGGCTGCAGAGTCGCGGGGAACGATGGCGATGACGTAGTCG
GTGCATCAGCTGGAGGAACTTGCTGAAAAGGGAACACTTTTTCGTCAAAGTATGTGTCGT
GAAGTGATCACCCGATGAGAGACGGGATCGTAGCACCAATAGCCCTTGGTGTTGGAAGGA
TAACCAAGAAAGATGCATGCGAAGGATCGCGGAGCAAGCTTATGTGGTGCTACGGAAGCG
ATGCTAGGATAGCAAAGGCACCCGAAGATGTGAAGACCATCATAAGATGGGGGAGTGCCG
TAGAGAAGACGATGTGACAGATAGTTCCAGCGAGCACGACAGGGCCGGATGTTGATCAAG
AGAGACGCCGTGGCAAGAGCATCAGGCCAGAAACGAGGTGGGATGTTGGCATGAAACAAG
AGAGTACGAACGCAATCATTTAGCGTGCGAAGTATGCGTTCAGTCCGCCCGTTTTGCTGC
GAAGTGTAAAGACAAGTTAGACGAATGAGAGTACCATGAGTGGCGAGAAAATTCCGAATG
ACCAGATTGTCGAACTCTTTCCCATTGTCGGTTTGAAGTGCGAGGATGGGGCGACCAAAC
TGCATGGTGACATGTGAGAAAAAGGATGTAAGTGTAGAGAGCGCGTCACATTTCTGTCGT
AAGGGAAAAGTCCACACATAGTGAGAGTAATCATCTAATATGACCAGATAATAAAGATAG
CCAGAGTTACTTGCGAGAGGTGAGGTCCAGACATCACTATGAATTAACTGAAAGGGATAA
GATGCAATGGTGGTAGAGTCGCTAAATGGTAGACGCATGTTTTTGCTGAGACGGCAAGCA
TGACAAGTATGGTGGTCTACTTTATTACAAGTGAAAGAAAAACTCCAAAGAATATGATGA
AGTGCAGCGGGGTTGGGATGTCCCAGACGAGCGTTCCAAAGATCCACACCGGCGGAGAGC
GACTGGTCCAGCAGAGTTGGAGGCGGAAGAGCCGACCGGGTAGAGATCATCGGGGCTGTC
ACATCCGTGTAGAACCATCCGGGTACGGGCGTCCTTCACAGAGAAACCACATTCATCAAA
TTCAACAGTGAGAGGATTTTCACGAGCAAGGCAGCGAACGGAAACAAGGTTTTTAACAAG
TTCTGGAGAGACAAGAACATTAGACAGATTGATGGGAGTAGAGTTCGAAGGAAAAGAGGT
ATGATCAATATGTGTAATGGGAAGAGAAGAACCGTCACCAACGGTGATGCGGGTAGAGGT
ATTGACAGGAAAAGAAGTGGCGAGGTTACCATCCGAAGAAGTAATGTGGGCGGTAGCCCC
GGTGTCCATATACCAGTCTCCGCCGCCAGTAGATGTTGGGCGTGGGGGCGGAGTGAAGCG
CGGCCAGCAGAGCCGGGTCCCAGGGAGCAGGCGGTAGCTGCTGAGGGGCCGGGTGGAGAT
AGGATCTGCCAGCCGGTTGCAGAGGTGGAGCCGGCAGAGCCGGGTATGCCCCATACTTCT
ATGGCGGCGCAGCCGGCGGTGGCGATGCGAACTGTTGGGGCGCCACGAGGTAGGCCTGGT
GATGAGCGAGACGAGGACCGAGGATGCCGGGTGTGAGCCCGCGAGGCATCGACATGGAGT
AGGCATGGACGATGCCGGTCCATGGGTTGTTCCCGTAGGACCACGACGGCATGGGCTGCT
GCTGCTGGTTGGCTCGAGGCGGATCGCCCGGGACAGGCGGCCGCTGCTGGCCTTTGCCCT
TGTCGTGGCGGCTACCGCAGTTGACAGGGGGAGGTGGTGTTGGTGCGCCCTGTTGTGGGA
ACAGGAACGGCAGCGAGGGTGCGGGCGATGCCAGCTGCTGCGGAGGTGGCGGTGAAGGAG
CAGCAGCGCGCGAGGTGCCGGCAGTGAGGGCCGTATGGACAGCCCGGAGCTTTAGTTGCT
TCATCCGACGCTCTTCCAGCTTGAGATAGGCGACGGCCTTGGGAAAGCTCGGGTCAGGGA
TGAGCGTGAGGTTGGCGGCGGCGTTGGAGAATTCCTCATTGAGGCCGTTGACGAGGGTGA
TGAGGAGGAGATCGGAGGAGACCTTCTCGCCGATGTCGTGGAGTTCATCGCAAATGCGTT
TGAGGTGCATGCAGAAGTCCTCCACAGAGGAGTTATTTTGGTGGCAACCAAAAAATTCCT
GCTGGAGAAAGACGAGGCGCTGGAGGCAGTTGTCGGTGAAGAGCTCGTTGAGCTTACTCG
AGACGAAGTAAGCATCATCATCATCATGAACCACCGTGTAGAAGAGGTCCTTCGAGATGG
TCTGGAAGAACCTGCAGATGAGAGTAGCCTCGATAGCCGACCACTCGGTGTCGTGCTTCA
TGGCCTCGGCATCGACGAAGTTGAAGTAGGTCTTCCAGGGGTAGTAGGAGGAATCGTCCT
GGGAGAGACGGATGGGGACGCGCTCGTGCATGTCTCGTGTATGTTGATGTTGCGGGTGTC
CTCGGCGGCGATGGGATCGGGACCACGTGTGGGGAAAGTGGACGACGACGACAATGGAGC
TGCGGTGGTCGGGTGCGGTAGACGGCGGCAGGAGGGCTGCGGCAGTCGGG
