Contig Data
morexGenes
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Map Locations of contig_74740 (4575 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_74740

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_77194 1 200 bp MLOC_77194.1 Available Available LOC_Os02g01170.1, FRAME:-2, EVALUE:2e-30, 13102.m00028 protein HECT-domain domain containing protein, expressed
MLOC_77195 1 607 bp MLOC_77195.1 Available Available None
MLOC_77193 1 220 bp MLOC_77193.1 Available Available LOC_Os02g01170.1, FRAME:-2, EVALUE:3e-35, 13102.m00028 protein HECT-domain domain containing protein, expressed





CDS Structure of MLOC_77194






CDS Structure of MLOC_77195






CDS Structure of MLOC_77193






Contig Sequence (4575 bp)

>contig_74740 4575 assembly3_WGSMorex_rbca.fasta
GGACCCAAAATCAGTGACCAATAGAATAGAAAACTGGCCACAATAGGCCAATACTATGAG
GTTTGACGAGTTCCACATAACCNNNNNNNNNNNNNNNNNNNNNNTTCGGATCGCAGCGGG
ACCCAATAATAACCAAGACGTATATGAAGGAGATGCCAACATAAAACACCTTTTGAACTA
TGGTAAGCTTGGGACTAAGGGCAGCCAAACCACCAGTTGGAAGCCGAGAAGAAGCAACAG
TTACAAACTGGCAGAATGCATGCTGTTGATCAGGGGTAAATTTCGCCATGATCTCAAGTA
GCTTCGCCATGATCTCGAGTAGCTGCAGACAACGAGAGGATCAAGATATCATTAAACATA
TACAGTGCCAGATTAAGGTATAGGAAAATAAGGGTGTACTTACATTTATAATGGCAGGAC
TTTTAGGAGTAAACCGGTGATCAAATTTTATGTTATCCACCAGTGATTTGGCCTGCAGCA
ATCAAGGCCAGTTCAGTGGAAATGTAACAGGACACAAGTGAAATCAAGAGAGGGAGATGA
AGCGTTACCTCCCATATTTCTTGACGACCACATATTAGATAGTCAAGCTCTTGAGGTGAA
AATATTTGGAGGGATGAGATATCAAAAAGAGACCTAAAACAAAGAAAAGTACACAGTCAT
TTAGGAAAAGTAAATAAGTCTCGATACATCTACACAATGATTAAAAGGAGTTGACAAGCG
AACAGAATGAGGTCGCACCTGGCTAAAACCTGATATGAAAGCTTCAACCTGCTTCATAAT
CCCTGACTTCACTGTCGCATCGACTACCAAAGAAACATACTCCTCTAGGTTGTGGATATT
AACCTAAGGGAAAGAATAAACTCTATTTATCACTTCCCGCATAAAAAGAAGAGCAAATGT
GAACACGAAATCCCTAACATGAACACATCACTTACAATTATGTTTTGCTCGCCTTCTTTG
AGAACATAATCAGGAAAACCTGGAAGAGTAAAAGCTAAACACAGGTCCTCGATAGGAGCT
CCACGGAGGGAATTGAGGAAGAACAACAAAGAACCGAAGAGGAACCAGACAATCATGGCG
AAGGAATTTTTCTCGAATTAACAAAGTCCGGCGAGGTTTATATTTGACCTCTGGTGATCA
TTAGATGTATTAATTCATGTGTCGGAGGTAGTTACCACTAACTGGTAGACATCATTTTCC
ATATATATGGTCATACGAAAAATTCTATGATATATACATAACGTCTACAGTATATGATGG
TGTAAAATATGTTTGAAATGAAAAATAGAAAATGAAAAGCAAAAATAATAAACAATAAAC
CCTAAAACCCAAAACCCCAAAGCACCAAAGCCTTTACTCCCGGTTGGTGCCCGCGGTGCG
AGCTGCCAACCACGTGGATGTGTATTAGTCCCAGGTCGTGGTCAACCGGGACTAGGGGGG
CTTTAGTCCCAAGTTATTAGTCCCGGTTGATGACCCGGGACTAAAGGCCCTTACCAACCA
GGACTACAACCTCGTTTTCTACTAGTGGGTGGATCAGGCAGCGAGCACACACCGGTGCGC
GACGAAGGCCTCGTTGCCGACCTCAAATGTCACATCAACGCCCACCTTACTCTGAAGGAG
AGCGCTAACACGTTGATGTATGTCCGGCGGGAGCACCTCCGTGCCGTCAAGACCACCGAC
ATTATCATCTCAAGGGCGTATGTTCTTGTAAACCTGTCGTTGCCCTAGCTCGGAGCGTTG
TGGGCTGCGAGCTAAACGAGTACTAGAATGTACCTTCTCGACCTAGTCGTCGAGACTTAA
ATAAACTTTGCATCCGGGACCTCCTCGACACCGGTGTCATAGAAAGGGTTAGAAACAGCG
AAATGAAGCTGGTGCAGAACGAGATGTTGTCGTTCGGGAAATAGTCGAATCATGGCCTCC
CGACGAGAGGGCCGGCGGTTATGCTCTCGCCCATGGACATTAGCTCTTTTGTGCGCGAGT
AGCCCTTGACCATGAGCAGGTCTTTGCATGCCTGGTGCTAGAAACACTAAAGTGTGCCTT
CTTCCACGACGTGTCCCCGGGGTTGGCAAGCCTAGTGCGGTTCCTCATCAACATCGAATT
CTTTCGTCTACACATGCCCGGTGCTGACAACACTGACATGTTCCATCGTCCACGATGTGT
CCACCAAGCCTAGCAAGTCCAGTGAGGTGCCTTGTCAACATCGACTTCTTTCGTCTATGC
ATGCCCGATGCTGACAACACCGACATGTGCCATCACAATGCTTTGTCAACATCGTATTTT
TCCCAGCGCACCCCTACCTCGAGTCCACTGTGCACAAGACTAACTCGGCGCCTCTGTGCC
CCCGCGGCTCCACAGTGACTACCTTGACACCGGCCACCCCGACTGGACATAGACCACTTC
GTCCCTCGCGCAACTACCTCGACCACGACTATACCATCCTACATTCTCACGTACATCAAC
ATGGGCACAAATATCTAACGTCTTACTTGAACAACCTCGTTGGTTTCCACACTAGCCAGG
AATTCCGTCGATGCATCGACCATTACGACTTATGTGTGTGTGGGGGGGGGGGGTATCCGT
CGGCTTACATTCTGGTACCTCTTCAGTCTCATCACCTGTGTCGCTACCTTTGTGACTGTG
GGGCGTTGTTGAGTATCGTAATTAGTTAGGAAATATAAAATAGACTACGAACTATTTCAG
CTTCTCTTGTACTTCAAGTTGATCATGTACATCTATAGGTATAGGCACGAGGCTCAAGCA
ATAAACATTAATGCCCTTCTCTATTCCTCTTTACGTTTAGAAACAAAAATAAATAAAATT
AAACAAGATATCGGCTCTGTGTTGACTACTTACCTACTGCAGTTTGTGTTCCACAAGTTG
GTTGACAAAGTCAAAAGACTACGAAAATATAGATGCAAGAGACTAGCTTGCGGTTTGTGC
CTAAAAAATGATTTAGTTTGCAGCCTGAGCGATCAGTTATAAGCAATAAAAAGAAGGCAA
CAACCGCGTCGTGTCTTTGCCTATAGATAAATAAATAATTTCCAAGAGAAGGAGTACTGA
GATCTATTAACTTGAACATTTATTTATTCAACCTGACTGACATTTTTACAATAAATAGGC
ACCGAGCCAGCTGGATTTGGTACTCACAAATTTGATCCCCTATGTGCATGCATACATACC
GAGGCACTAATTCTATCCATTTATTATTATTATTTAATTTTGGCACATCAGATTGCAATA
GAGATAGCCACCATCAAGACTGAGGGATTTCTCCGTGGTGGCCCTCAGCACCACCTCCTG
CTCGGGTGACACCATTGCATTCAGTGGGGGCGCTCTATATTCTTCTTGAGCCGTTCGCCG
GCGTTGGGATCGAAATTGATCGCTGCAAGTGCAAGCGTATATAAAATACCGTTGTTGACC
ATTTCACGGACTACGGGAGGGGCCAGAACTTATATTAGGTAAAAACGAGGCAGCTGAGTA
CTCACCGCATTCTACGATGGGGCTGGTCGTGATCATCACCGCGACAACGATGAGGAACAT
GATGGCGAGAAGACGAGCAGATCTTGCCAAGGATGCCATTGTACGCGCTATGACAGGGGG
CTGATAACCTATGACAGGGGGCTGGTTATCAGTTTGAGTTGATTTATGCTTCTTCTTAAT
CTGATTAGTGTGATCTGTCTTGTCCTTGCAAGCCGTGGTATTTATAGTAACAGACATGTA
TGCAACTGGTTTGGAAGGGATGCACACATGACTAAGTCTAAGGGCACGTGGTGTTATGCC
TATATTTAACTAATCGGTTACTCGAAAGGTGAGAACAACAGGTGTGAATGAACGTTTTAT
TTTGGAACTTGGCCTCGTATATATGACAGTCAAAGCTTCTAGCAGCACACGTGTATTCAT
GGTAAACACGTAGAATAATTCAGAAACCTTTCACCCAGTTGCTCTATATGGCACATCCAT
GACATACCAAGTTTTTGCAACTAATGATCAAAGAAATAAAAAAAAAAGGAACATCACACC
CATTGGAAATTACCCGAAATAGTTACACTTGAGTTTAAACCAACATCACATATAGTCCGT
ACGATACAAATGAAAACGACAGTATGATGCAAATATATTACATAAAATTTAAAACTAAAA
CTAGATAAAACTTTAAAACTAGATAAAACTAGACTACTTTTCATCATTGTCCTCGTTGCT
GCCAGGGTTCATATGAACACGTCCGTCCACCCCTCATCGTTCGAGCCTCACAAGATGACC
GGGTTCTCCGACTAGGAAATCGCCAAAGCCTTCGGCTTACGCTTCTTGTTGCATTTCGCA
AGTCGGTCCGCCCTCCTTCGTGCCCAAAACGCGTGTTCGTCGGTGACATCTTGCGGGAAT
CGCTCGCGCCACACCGTCATGGCCTGCTCATTCATCTCGGTGATGAGGAGACTGCACTCC
CACCTCTGCTTGATGTTGAGGTCCTCCGCGGTGATTAGCCGCGGTGGAGGCGCGTGGGCC
TACACCTCCTCGCGCGTCTGAATTTCCGGGAAATTCATCTGAGCCCGTGGCCTCCTGAGC
CGCCACGCCGCCGCG