morexGenes - Barley RNA-seq Database

Contig contig_7474

Source Contig contig_7474

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_7474 (4345 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_7474

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_77192	3	4329 bp	MLOC_77192.1	Available	Available	LOC_Os11g19810.2, FRAME:+2, EVALUE:4e-92, 13111.m02007 protein PWWP domain containing protein, expressed

CDS Structure of MLOC_77192

Contig Sequence (4345 bp)

>contig_7474 4345 assembly3_WGSMorex_rbca.fasta
GCCGCCCCCGCGGGCGAGGGGCCGTCCCCCGCCCGCCCATCGCGCCTCCGCGTCATGCGC
CCGGAGGTGGAGGAGGTCCTCAAGAGCCCCCGCCGCGGCCGGCCCAGGCCCAAGGAGGGC
GCGGAGCAGGACGACGCCGCCGGCCCGCGCCCGCGGTACGATTGCGCGTTCCAGGACGAG
GAGAGGAAGGAGGGGGAGCAGGGGTTCGCGCCGCCCGACGTCGTGTGGTGCAAGGTGCGG
AGCCACCCCTGGTGGCCGGCCCAGGTCTTCGACGCCGCCGACGCCTCCGAGCTCGCGCTC
CGCCACGCCAGGCCCGGCGCGCCCCTCGTCGCCTACTTCTGGGACCGGACCTTCGCCTGG
ATGGACCCCTCCGCGCTGCGCCCCTTCCGCACCCACTTCCCCCGCCTCGCCGCCCAGAGC
ACCGTCTCCAGCTACGTCGCCTCCGTCGACGCCGCGCTGCAGGAGGTCGCCCGCCGCATC
GAGGCCGGCCTCTCCTGCGCCTGCTCCCCGCCCGCCCTCGCCAGGAAGCAGCAGATTCAC
AACTCCGGGATCAGGGAAGGGGCCCACGGCGCCGTGGTGGACGAGGTGTACATGAGGGAC
ACGTTCCGCGCCAAGCCCTTCATCCACTACATTTCGGCGCTGGCGAGGACCCCGCTGGCC
GGCGCCGATCGTCTCGACCTTGCCACCGCCGTGGCGCAGCTCAGGTCCTTCAACCGCTTG
AGGTGTCCAATGGAGCTCCCTGAGTTTGTCATCTACCAGGGGATTGAGGACGTTGCTGCT
GAGGCTGAGGTGGCAGCAGCATCCCCGCACACAAAGAGGAAGAGGACGGAGAGGGATGCC
GATGCTCCTGCCAAGGAAAAGAAATCGAGGCATGTCGAGGGCTCATCTCACAAGAGAGAT
GCTGCTGCCGCAAGGGAACAAGAAGAGGCCATTGAGGATGCTCCGACCAAGGAGGAGAAG
AAATCGAGGAGGAGCTCGTCGCGCAAGAGAGATGCTGCAATTGAAGAAGAGGACAGCCCT
CCTATCCCCTCAGCCAGGAACTCCTCCAAAGATGCAGCCGATAAGGGAGGAGAAGCCCCT
TCAAACAAAGATGCTGCCATGGTTGAGGACAGCCCCATGCCCAGTAGCAAGCAAAGCAAG
TCGAAGAGAGCTAGCAAGAGTGCAGCAGAGAAAAAGAAGAAAGAAACCTCCAAAGACGCA
GCAGATAAGGGCGAGTCTCCACCAGAGGCAGAGCCTGCGAAAGAAGATGATATGAACGAG
GACAGCTCTATGCCAAGTGCGGAGGCGACAGATGATACGTTGAGCAAGCAAAGGAAGTCC
AAGTCGAAGAGAGTTAACAAGAGTGCAGCAGAGAAAGAGAAGAAAGACACCTCCAAAGAC
GCAGCAGATAAGGGCGAGTCACTACCAGAGGCAGAGCCTGCAAAAGAAGATGATATGAAC
GAGGACAGCTCTATGCCGAGCGTAGAGGCGGCAGATGATACACTGAGCAAGGGAAGGAAG
TCAAAAAGAGCTAGCAGGAGCTCAGCAAAGACAAAGAAGAAGGACACCTCCAAGGACGGA
GACAAGACAGAGTCTCTAACAGAGGCTGCAAAGGAAGTTGCCGAGAACGAGGACAGCCCT
ATGCCCAGTGCAGAGGCGACAAATGATACAGTGAGCAAGAAAAAAAAGTCAAAGAACAGT
AAGAGTTCGGCAAAGACAAAGAAGAAAGATGCAGATGGTGCATTGAGCAAGGAAAGGAAT
TCCAAAATCAGTACGAGGTCGGCAAAGAAGAAGAAGAAAGATGCAGATAAGAAGGAGTCT
CTGCCAGAGCCTGTACAGGAAGGTGCTGAGAATGATGACAGCTCTATGCCCAGTGGAGGG
GCGACAGATGGTGCATTGAGCAAGGAAAGGAATTCCAAGATCAGTACGAGGTCGGCAAAG
AGGAAGAAGAAAGACACAGATAAGGCGTCTCTGCCAGAGCCTGCAAAGGAAAAGGCCACT
GGTGATGGCAGTTCGACGCCGAGTAGAGGGGCGGCAGATGATACACCGAGCAAGGAAAGG
AAGTCCAGTAAGAGTTCAGCCAGGAACAGGATCATAGACACCTCCATAGATGCATATGAA
GCTGAAACAGCTGGTGGCAGCAAGACGGCAGACAAGAAGGCTGTGGATGGCAAATCAGGG
CGTAGACTAAGGTCCAGCCACAAGATGCGAGAGGCTTTGGAGGTTCTGAAAGGGCCGGGG
AAGAAGCATGCTGGGGAAACCACAAAAGCAAAAGATAAAGATGCCGTTTCTCCTCTCCAG
AAAAGGTTGCATCTTGATGTACACTCAGCAACCGAGAATGCACCCTTTGCAGTCTCTGAG
CTTGGCAGGAAGAAGAAGACGCTTGTTGAACTTCTGTCAGAGACAGCTACTCCTAATCGT
TCAGCTGGTGGTAAGAGCAAGGCTCGAGCAAAGCGTCCCTTGCCTTCTTCAACTCTGAAA
CCTGAGGATCCTAAGGCTACACCAAACACCAGAGGGAAGCATTCTTTGCCTGCTTCTGCT
GAGAAACCCGAGGATCCAGGCCGTCATAAGGATACAATGAAGACCAGAGAGAAGCGTTCT
GTGGCTGCATCAACCGAGAAACCTAAGCGTGATACAAAAAGTACAGTGAAGACTAGAGGA
AAAAGTTCTTTGCCTTCTTCAGCTGAGGAACCTGAGGACCCAGATCGTGATAAGATTGAT
ACAGTGAAGACTAGAGGGAAGCGTTCTTTGCCTGAATCAACTGAGGATCCTGACCGTGAC
GCAAAGGATGCAGCGAAGACTAGGGGGAAACGTTCTCTGCCTGAATCAACTGAGGAACCT
GAGGGTCCTGATGACCGTGATATGAAGGATACAATGTACACCAGGAAACGAAAGAAGCTC
GACACATTGGGGGATTTGTCTTCCCAGCCACAGCCTGTTTCTCCCAAGGGTGTTACGAAA
GCTCGAGAAGTGAAGCGCAAAGCTGCTGGGCAGAAGTCACAGGCATCTCCTGTTGTCAAA
TCCAGTGGTGGCATATCAGGCGATTCGTCTTCCCAGCCAGAGCCTCTCTCCTCTAAGAGG
TCCGCAAGGCGCAAAGCTGCTGAACTGAAGCCACAGACACCCCCTGTTGTCAAAGCTAAC
GGCGAAGCTTCTCAGACGAGGTCGCGTAGGGCCAAAAACAGTGAGGTGACTGTTCCAGAC
AAGCCTCCACGCTCTGTTAAGCTGGATAAGGGCAAGAAAGGTGCCGTGGCAGAAGACTCT
CCGTCTTGTGGTGAAATGCTGTCGCAGCTTTGTGTAGGAGCAAGTGATGCTGAGAAGATA
GGGAAGATCACCCCTACAAGCGCTAGCTTCTTGACTGATTTTTTGAAGAGTGCTCGTGTC
TGTACTTCTGATGTGGAGGAGGCAGCCAACACAGACTGCCGTGCTTCTAGTCCCGGTGCT
GACGAGGAGATACCTGAGAAGGCAGCAGCAGACAGAATTTCTAGTACCCATGCGGACTTG
GAGGTGCCTGAGGAGGCAGCAAAGAAAGTATCTAGTCCGAGTGCCGATGAGGCGATACCC
GAGGAGGCAGCAGAGGAAGTATCTAGTCCCAATGCTGATGAGGTGATACCCGAGAAGGCA
GCAGATGAAGTTTCTAGTGCCCCTGCTGATGAGGCGATACCTGAGAAGGAAGCAGAAAAA
GTTTCTAGTCCCCATGCTGACGAGGCGATACCTGAGAAGATAGCAGATGAAGTTTCTGGC
CCCAATGCTGATCAGGTGATACCTGAGAAAGCAGCAGATGAAGTTTCACTTGCTCCTGCA
GACGAAGAGACACTCTTGAAGGTAAAAGAGGAAGTTTCTAGTCCCCACGCTGACGAGGCG
ATACCTGAGAAGGCAGCAGATGAAGTTTCACTTGAGGAGGCAGCAGAGAAAGTTCCTGGC
CCCCATGCTGATGAGCAGATACCTCAGGAGGCAGCAGAGGAAGTTTCTAGCCCCCATGCC
GATGAGGCGATACCTGCGAAGGCAACAGAGAAAGTTTCTAGTGCCCTTGCCGATGAAGAG
ACACATGAGAAGGCAGCAACAGAGAAAGTTTCTAGTGCCCCTGCTGACAAGGAGACACTT
GAGGAAGTAAAAGAGGAAGTTTCTAGTCCCCATGCTGATGTGGTGATACCTGAGAAGGCA
GCAGATGAAGTCTCTAGCCCCCCTGCCGACGTGGAGACACCTGAGAAGGCAACAGAGGAA
GTTTCTTGCCCCCCTGCCACCGAGGATATAGCTGAGAAGGCGGCAAACAGAGTGTCCAGT
CCCCCTGCTGCTGAGGAGATGGCTGCTGAGAAGGCAGCAGACAAAGCGCCTAGTCATCAT
GCTGCTGAGGAGATGGCTGCTGAGA