| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location | No map location | No map location |
Predicted Genes from contig_74489
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_77132 |
2 |
2040 bp |
MLOC_77132.1 |
Available |
Available |
LOC_Os06g35550.1, FRAME:+1, EVALUE:0.0, 13106.m03670 protein retrotransposon protein, putative, Ty1-copia subclass, expressed |
| MLOC_77359 |
3 |
3551 bp |
MLOC_77359.2 |
Available |
Available |
LOC_Os04g28260.1, FRAME:-1, EVALUE:0.0, 13104.m02676 protein Kinesin motor domain domain containing protein, expressed |
CDS Structure of MLOC_77132
CDS Structure of MLOC_77359
Contig Sequence (4709 bp)
>contig_74489 4709 assembly3_WGSMorex_rbca.fasta
TTGATGCGGTGGTTACCGAGTTTTCTTGTGTGCGTGCAGGAAACAGCCCCTCGTGGTCAG
GTTGATCGTGCGCCGGCGTGTTCAATAACCTCTCAGAGTTGGTTTAACGATTGCTAAGAT
GCGACGTCTTCGCACGTTCATAATCGGATCGTCAAAGTCTACTCCACCAAAAACGTTAGC
CACCATCTCATCGAAAAACAGGGACAACTCCGCCTCTATCATCATGAGCAACCTCGACGC
GATAACCTGCTTCGACGCACTGGGATCTTGCCCAAGGCCGTATGTACAGATTTGAGGCCC
CCGGTGCGAAATGCACATTGGGTCTTAAAATTAACAAATTTCAGTAAGCTTAAGGAGGCT
AGGTGATTTCTTTTATATAACTAGCTAGGGCTCTAGCTTATTAACATAGAAGGATATATA
TAAGCTCTGATAGGTAGATGAAAGTCCTCGGGTTGAGAGCAATTTGCGAGCGATGAGGAT
GTCGGCAATTCGGTGATCGGCACTTGCAGGATGATTATAATAACTTTGCGAAGTTGGTGT
CTAATTTCCGCCACCGTTTTCCTTTTTCTTGTACGCAACTTATTGGCCAGTTGTGGAACC
ACTCCTTCCTTCTACCATCTATATATATAGTTGCCGGCTTGTAGTTGTAGATCATAGTTG
CATCGATCAAATCATGGCAAGGACACGGAGGACGACAATGTTACACCTTGTCCTAACCCT
CTACATCCTCTCGGTCTCGGGCCAAAACACGCTCTCTAATTTAGGTCATTCCGCTGCAAT
CCATGGATTCCTTGGCTGCCTCTCCGCGGACATCCCGTCTGGCCTCATCCAGACCCCGGC
AACCCCGTCCTACTCCGCCCTCCTGCTGTCCACCGCCCGGAACCTCCGCTACATCCTGCC
GGACACCTCGAAGCCCGTGGGGATCATCGCGGCCGCCGAGCACGCCCACGTGCAGACCAC
CGTGCGCTGCGGCCGCCGCCACGGCGTCCGCGTCCGCGTGCGCAGCGGCGGCCACGACTA
CGAGGGCCTCTCCTACGCCTCCGTCCACCTCCACAACGAGCCCTTCGCGGTGCTGGACCT
CGCCGCTCTCCGGGCGATCCACGTCGACCCGGCGCGTGCTGAGGCGTGGGCCGAGTCCGG
GGCCACCGTCGGCGAGCTCTACTACGCCGTCGGCGCCGCCAGCCGCTCGCTCGGGTTCCC
GGCGGGCTCCTGCCCCACCATGGGCATCGGTGGCCACCTGAGCGGCGGCGGGTTCGGGTC
GCTGGCACGCAAGTACGGCCTCTCCGCTGACAACGTCCTCGACGCCCTCGTCGTGGACGC
GGACGGAAGGCTGATGAACAGGAGCAGCATGGGGGAGGAGCTCTTCTGGGCTATCTGTGG
CGGAGGCGGCGAGAGCTTCGGCGTCGTGCTGTCGTGGAAGGTGCGGCTAGTCCCCGTGCC
GGAGACCGTCACGGTGTTGAGCATCACCAGGTCAAGGAGCCAAGGTGCCGTCGAACTGAT
CACCAAATGGCAAGAGGTGGCGCCGGTTTTACCGCAAGAAGTGTACCTCCGCGTGCTGGT
GCTGAACCAGCAGGCTAATTTCCAGGCCATGTTTCTTGGGCGGTGCGGCGGCCTCCATCG
GCTCATGCAATATCGCTTCCCCGAGCTTGGAATGACGGAGCAAGACTGCGAGGAGGTGAG
CTGGGTGCAGTCCACCGTCTTCTTCGGCTTCTCCACGACGTCCATGCCGCCGGAGCAGCT
CCTCAACAGGAGCAGCAACCCGAGCTACTATCTCAAGGCCAAGTCGGACCACGTGCAAGA
CCCCATTGCAAGGGACGTGTGGGAGAGCATATGGGCAGGGTGGCTGGACAAGCCCGAGGC
GGCGCTGCTCATGCTGGACCCTTACGGTGGGTTGATGAGCAGCATCTCGCCGTCGGAAAC
GCCGTTCCCGCACCGGCGGGGGAACCTTTACCAGATCCAGTACTACTCCTTCTGGTACGA
TAACGGGACGGCTGCAGCGGAGAAGAGAATGAGCTGGGTCAGGGGACTCTACAACGAGAT
GGAGCCTTACGTGTCCAGCAACCCAAGGGCTGTGTATGTCAACTACAGGGACCTTGACCT
CGGGACGAATGAGTTGGACGGCAACGTCACCAGCTATCACAAGGCTACAGTATGGGGACA
CAAGTATTTCAAAGGTAATTTTAAGAGGTTAGCAGCTGTCAAGACCATGGTGGATCCCCA
TGATTTCTTCAGGAATGAGCAGAGCATCCCTCCTCTTCCCCGCTGCCAAAATGATACACT
ATAGTAGATGGAGATACCATCTGATCTCATTTCTGTGGAGTAGTGTGCGGTGCTCCTGAT
TGTCTCTACATGTTTCGACTCTTAATTCTTGGTGTTGTCACGTGTTTATAATCGTGTATT
CGTGTGGGTGGAAAAAAAATTGTGTATCGTATCAAGCTTATGAAAATAAGTAATAAATAA
AATGGAATGATATTGTTCCTTTGTTTAAACCTCTTTTTTTCAACAAAGTACAGACGCGGA
CGCTCATACATACACGCATACGCTCATTCCGATAAACACACACGTACACCTTACCTCTAT
CAGCACCTTAATATAACACACCGAATGCGAGCTCCACTTTGTGTTTTTCTGTGTCAAATA
GTAAGTGTGCAGCAAAGAGAGCCTTGGCTCAGTGGTTGGGCATTGCGGTTGTGCAGCCTA
ACGACCCGAGTTTAATTCCTAGAATTGACAGATGATGCACGATGCACATGTGTTTTCCCC
ATTTATTAAAGATCAAGTTTGATGTGTGGTGGAACTACTCATCAAGAAATATCTTAATCC
TCATTTAAAAAAATTCTGAAGACCATGTTTATCTTGGTATTCATAATAACATGGTTGTAT
GCATCCCTAGTTGATATAGAGACATAAGGGATGTGAGTACAAGTGTTGCGTAATAAGTAC
CTTCAATCTAAAACCCTGGCCGAGGTCAACGGTAGACACAATGATTCACCATTCTGGAAA
GGGTTGATGAAAGTGAGAGATGCCTTTTTCCATAGAATTAAATTCATTATTGGAAATGGT
GAGGGAACGAGATTCTGGGAGGATACGTGGTTGGGGGGGACGCCTTTAGCCATCCAATAT
CCAGCGCTGTATAATATTGTGCAACGTAAGAAAGCATACGGTGCCACAATTTTACAGTAA
ACCCTCTAAATATTTAATTTATACTACGCCTTGGGCGTCGCCAGCCGCTCGCTCGGGTTC
CCGGCGGGCTCGTGCCCCACCATGGGCATCGGTGGCCACCTGAGCGGCGTCGGGTTCGGC
TCGGGTGGAAACAGACGTCATCGAGGTAGGAAGAGACCAAAGAGGCTTCATTATAAGATA
TGATATCATTGTCAACACCTCGTCGATGTCGTGAGAAAACAAAACGTGACGAGAAAAAAA
AGAGAAAAAGGATGGACGGGTCCCACTCCTCTTGCCTCGCGTACGTGACTCCTCAGGCAG
CCGCCTCCTCCCCCATCTAGGGTTCCTCTGCCTCCCACGGCGCCGTCACCAGTCCGCCTT
GCATCTGGTGGCCTTAGGGTCATGGAAGCGCGGCGGTTCTCGGTCTTTGTCGGTGGGAGG
GCTTCGTTTTAGATGAGTCTTCGAGAATTGTTAGGGTTTGTGTCCAACTCGGGAAGGCAG
GACGGTGGCGGCTCCGTGAAGATGTAATAACGTTCTCCCCGCCTAGCCCTCGTTTCAGTG
GTGCGTTTAGCATCGTCGGTGGACATGTGGATGTGTGTCTCCAACAGATCTGTCCTTGGT
GGATTTTCTCGTCATTCATTTACGTTTGTGTGTTTTCAGGTTGGATCCTTTCGATCTACA
CTACTCTTCATCGGCGGCGGTTGTTGTTCTAGTGCGCTGGTCCTTTGGAGCCTTAGCACG
ACGACTTGTCGATTGTCTACAACAATAAGTTTTGCCCGACTCTAGTAAGGAGGGGTGATG
ATGGGCGCGTGTTCAGCTCGCTTTAGTGTTTATTGTCGTCACTAAGTGACCTACGAATTT
AGATCTATTTTTTATTATTTATGGTGTTTGTTGTAATCGAAGATGAATAGATTGGATGTT
TAAAAAAAGGGGGAATAGGAGGGGGACCGATCGATGTGGCGGCGTGTGGAAGAAAACTTG
GCGGCGGCCGCTAGGGTGACAGAGGTTGTGGCCTGCGGGTTGACGGGATCGTACGTTTGT
CAAGTCCTTTCGATTGGCCTGTCGTGCAAAAAAAAGGAAAAGAAAATAAGTTTAATGTAT
TTTTTTTGGAAAAGAAAAAAAGTTTTATGTGTTGAAATTTAAAACACCAGGGCTCCGTAC
GGGACGCTACTCGTCTCACAAGCGGATCAAACCCGCTCACCAAGATCCTGGACTCAGCCA
GGGGCATCCCCAAGTAAGCGATGGGGAAGAAAGCCAGCCTGCAGTTGAGGTTGTCCGCGA
TCCTGTGCTGCTCAGCCACGGAGTAGCCAAGGACTACCACCTTGCTCTTATCAAACTTAA
TCTTAAGTCCAGACATTTCCTCGAAGCAGAGCAAAAGGAACTTAAGGTTAACAATGTCCG
AGTTGGAACCTGCAACCATGATCATGGTGTCGTCTGCATTCTGCAACCATGATCATGGTG
TCGTCTGCATTTTGTCATGGGAGGGATGGATAATAGATGNNNNNNNNNNNNNNTTCCCTA
AGCATGTATGACCACACACGGAATGCATG
