Contig Data
morexGenes
Links



Map Locations of contig_74178 (9197 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_74178

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_77071 2 1970 bp AK249880.1 Available Available None
MLOC_77070 1 2228 bp MLOC_77070.1 Available Available LOC_Os05g04160.1, FRAME:+1, EVALUE:0.0, 13105.m00410 protein pentatricopeptide containing protein, putative





CDS Structure of MLOC_77071






CDS Structure of MLOC_77070






Contig Sequence (9197 bp)

>contig_74178 9197 assembly3_WGSMorex_rbca.fasta
GCCCCAATGGCGGGGGCCACCCGGTCCAACTGGGGGGATTTCTATCCGGCCACTGTACGT
AGTGCTCATCTGTCGTGCCCTAAGAACGAGATACGCGACTCCTNNNNGGTTCGTCGACAC
ATCGGGTGGCCTTTCTGAACTTGTTTTTACCTTAACGATATATGTTGTGCATCGGATTCC
CGTGATACTTCGGGCTAACCCAGAGTTGAGGTTTTCCTATAAGGAATCCGAGGAGATCAC
AGGATTTGTGGTCGAGGCTTTCTATGCAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTCTTTCGGAAAGACGTGCCCGTGGTTATGTGGCAATGTGGAA
TTTTATTTAACACCCGATTCTAGATAACTTGAAATAACTTAATTAAAACTTGCCAACNNN
GTGCGTAACCGTGATTGTCTATTTCAGAGCTCCTTCCACGATCGAGAACACGGTGGGGTT
ATGACTTGCGTAAGTAGGTGTTCAGGATCACTTAGTGATTACTGCTAGTTCACGACCGTC
ATGCGTAGACCAATCAATTTACTTCATGTTCTCGTAAGTTAGCCACCATACATGCTTAGT
GATGCTGCAAACTCAAACACTTACCCTTTCACACCCAATAATTTAGTTAGTCCCGCTATC
ATGGTCATAAGATTGTTGATTCCTCATGGCTCACAGATTACTACAANNCCACAGGTCCAG
GTACCGCAGATCGAGAGGCTTTTGATGCTACGCAGTTGCAGTGGGAGTTCGATGAAGGCA
GTGGTCGTATGTACGTGACATACCCCCATGATTATAGGACCTTGGTCATCTCTTGGGCCT
AGCGAGACAGATCATTGCTATTTTGTCATTTATCTTGTCCGTAGCCGGACCCTGACTTAT
GGATGATTTGAAATAAATTGTTGAGTGAATTGTAACTTAACTTGTGGCGGGTGTAAGCCA
ACTCATATAATCACCCCTTCTTGTATGTAATGCAATGATTTTTGTGCTTGCGAAACACTA
ATATGCGCCTATTTCCCTATTGAGGCCTCGCCCCCAAATATGGAAAGTGTCACACCTTGG
TCGTTACAACGAGGCCGAAGATGGGGAGGCCTGGCAGGTCACAGCAGGCATCGGCGGCGA
ACGGCGTCGCGGCGAGCGCAGGACCGGTGCTTCTCTGTCTCTCTCGATGCAGGAGGGGAG
CGTTAGAGAAGGCAAGGTACGGGGATGGGAGAGCAAATGGCTCCCTCGGCCCCTCCTCCT
ACCCATTTAACCCCCGTGTGGGGTAGTGGGGGAGGGGACCCGACGTGTGCGGTGTTACTG
CGCATTGGGAGCGCCAACCGTCGCCCCCAATCCACAGAAGATCCGCGTGCGTGGGCCGAG
GCTGCATTCAAGCGGGCCTCGCCCCGCGGTCCGATCTTGTCACGCACGTGGCCTGTCAGG
CCTCGGCCCGTGGCACGCCACACATGACGTCCTTCCTCTATGCGTCGGAGAGCCCGAGGC
AGTTCGAGCTACGGTCGGCTATGGACCGGGCCATCTCCGGCTGGCAGGCGCTCCGGCTGC
TGCTCTGCAAACCCGTGGGCAAAGAATCTAAGCCGGCGACGTCCTCGTTCCAAGCCGGCG
GGCCTCCCCTACTTCGGGGACTACTAACGGGGGGATAACCCCGGGGTAGGCTAAAAACAA
GCATTTCTCTCATTCTCCTTTGGAAAAACAACACATGACAACCTCTTCCCACGAAGGACC
GGTTGCCCCTGGCCGGTTGCGCAACCGAGCCAGCTTGAGGCAAGGCCGCTCAACCATCCG
GCTCGACTGCGTCCCGCTAGCCGATGGGTTAGCTCCAATCACATCGCCCTGACAACCGCA
TCAGGGGCATTATCATCAAAGGCATCGCTACAACAGCTTAGGTACCGCTGACCTGACCGC
GCATGACTACAACGGTGGTGGTCGTACCATTGACCTTCACCAATTGCGACTAGCCGTGGT
GGCAAAGTGGTAGCACGCCTGCCATCCACTCCATTACCCACCCTGGCGTGGCTAGAGTGC
AGTCGGTCGTACCGCTGACCGCAACCGACCGCACAAGACAACGCTGCACAGTGTGGCGCA
CGCCGACGCATAACAAGCACGCACCAATGATGACAATTGGCCAGCGGGTCTTGGCTCCTG
CGGGACCCTGCAGCCGGCGGGCCCCTACATGCGACAAGACTCCTCCAGCCGGTGAGCCAC
CTAGCCGGCTAGAGATGCTTCCAATCGGGTCCCACCCGGTACTCTTTATACTTATTGTAT
GCCATGAGGGTTGACATATAAAACCCCTTGGTACCGCACCATGCAAGAGGTCGCCCAAAC
ACACACGCACACACCACACAGGAGAACTAGAGAGAGCACCTAGCTTCTTCTTCTTCCTCT
GTCGTACAACTCAAGGAGCACATTGTAATCCCATCCGGTTCATCAACCAAACCAGCGGGA
CTAGGGGTGTTACCTCCCACAGAGGGCCCCGAACCTGGTAACATCGTGTGTCTCGCACCG
CTTGGCCCCAATCCCATTTTCGGAGCCCGCCGGCGTTCTTACGGCCCCAACCACGTTCGA
TAAGCCACCCCATGGCATCTGTCATGATAAAATGACAGACACTCCGTGGGTTGAAGTCTC
CATTAACGTGGACGTACGATAGCACCACCTACCGGAACCACGCCAAGAATCTCCATGTCA
TCTTTCTGTTTGATCTTCCTATTTGTACTCCTTACTTTCACACGCATGGCGTTACTTTCC
GCTACCATACTGGTTTACTTCCATATGTGGGGTGTACTAGACTTGCTAGAATTGCTAAAA
CTTGTCAATCAATAAAATTGGAAAATGTTAGGTTTTTAATTAGCCAAGCAGTCTATTCAC
CCCAACTCTAGACGTCCCTTCTCGATCCAATACCCTTGGCCTATGGTGCCCATCACTGTC
CTATACATTCTTAATTATTCGAAAAGCCTCATGGAGCCTCTCGAAACACTTTTTCCGTTG
TCGCAAGTCTCTGTTCCGCCATGTGTCCATCTAGAGCCCTTTTCCGATGCCATGCAGGAG
GGGGGATCGATCACGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNACTACAGACCTACGGGTCCATAGTTAGTACCTAGATGTCGATTTCTCTCTATTT
TCTTCTTCATTGCCATGATTATGATAGCTTCGTAATTCTCCCTGATCTGTTGATTTGGTT
TGGCCAACTAGATTGATCTATCTGCAGTGAGAGAGGTGCGTTGTAGTGGGTTTAGTTTCC
TACTTTGTATTGCTGCCGTGATGCCTCTCCGTGACAAAGTAGGGGACACAACACGTAATT
TGTATTGCTGCTGTGAAGGAGGATGCGCCCTCCCCGACGCCTCCTGCACTACCTCAGTGG
CGGCGACGATGACAAGTCACGAGGCGAGTGATAACTTGCAAGTGCACATTTGTTTAGATG
TAGTCTTTAAAAAAATAAGAGTATCAACCTCACATGAGGCACATGAAGTGGTAAATTTAT
CATGATGAGGGTTCAAGTTAATGGCGGTCTAGAGCAAAACGAATACAAGGGTTGAAATAT
TGCATGAGAATAGAGACTAAAAATTCCCCTAAAATTACTAAAAACAAAAGGGCGGGAATA
AAATAAAATACCTAGAAATTGGTATAAGTTTTTTGGAATCCATAAGGCGAAGGTGTTTTG
AGGACTATGGATTCTCCTCTAGTATGTTTCTAACGTTACATATACTTGTTCTAGGTTTAT
ATTTTCAATCCACTATGTTGCTTCTATAAATGGGCAGAGCCAAGTTTATGATATCATGAA
GAATTTTCAAAGTCGTGAACGTATTTTACATTTATGAACAATTTTAAAAATTAAGATCTT
CTTTGAAGCCCCGATCTTCTTTTTTGAATTTAAGTTTCATGAACAGTTCTCAAAGTAAAA
AGTACAAAAAAAGACAAAAAAAGGAAAGACAAAAACAACATGGATCCCGGTAACGCCCGA
ACGATTCGGGATTTGATCATGTCAAATCGAACATTTTGATACAGTTTTGATGACGCGAGG
ACAAGTTTAATTGGCAAACATGAAAAATCCATGCTCAATGTTTTTTTGTCCGGAAATTGC
CATGCATTTCAACTAAGCTTTTCATTTTTGCATCACCAAAATTGCCAGCCAAAACATTTG
GTTTGCCATGATCAAATCCTGAAAATGTTCAGTGTTTATCATCTCCGAAAAATATCAGAC
CCCACGCGCCCACACATGACCGGCTGAAATCATACGCGGACTGGGGAGGGGGTGCGCGTT
GGGTATCCAACGCGCATGTCGCTGAACACGGGTCTTGTACGGAAGCCTATTTCGAAAGAA
CCAGTTCGTGTTAGTTTGAATAAGCTGGGCTTCCAAACCATGCCCGATATTTGGCCTCTC
AGGCCTGGTACAATGCAAGGTGCTTAGGGGAGGTGTTTAACGAAATAAATCAATTTTTTT
AACACCGATGCTTATTTCAAGATAGACGTTTAACTAGACGTTTCTCCTGTAGAAATATGC
ATTCATGCTTCAGAAAATTTTGATTTATTTTTCTAAACATATTTCTAAGCACCAAACATT
GTACGGAGTAGTATTGTAGGAGCCTGAAAGAATACCCATCGCTTACGCACTGCTAAAAAA
AAGTCGCTTACTCAAACGGGGCCAGTACTCTGTTCGACCGTCGAAGTTTTGGCTGCGCGC
CATGTGTTCGACCAAATGCCGCCTCCTGCTCAGGCGACTCCACGATCGCCATTTCTCCAC
CTCCCCGTCACATAACCACCGGAAGAGCAACCCGCAAGTCACCATCCGGTGGCCGGAGCG
ATCCAGTCCCTCTCCCGACGCCGGAGACACGGCGAGGGCCCATGAGGCCACCGTCAGGAG
GCTCGCGGCGGCAGGCGACGTGGACGGCGTCCAGTACGCTCTGCAGGAGATGCGGCTGCG
CGGGGTGGCGTGCCCCGAGGGAGCCCTCGTCGCCGCCATCTGCGCCTTCGCCCGCGCCGG
CGCGGCCGACCGCGCGCTCAAGACGTTCTACCGCGCGCACGACCTGGGATGCGCGGCGCC
CACCGTGCGGGTGTACAACCACCTGCTCGACGCGCTGCTCCGGGAGAACCTGGTCGGGGC
GGTGGTGCCGGTGTACGACAACATGAGGAAGGCCGGGGTCGAGCCCAACGTGTACACCTA
CAACCTGCTCATGAAGGCGCTGTGCCAGAACGACCGGGTCGACGCCGCGCGCAAGATGCT
CGACGAAATGGCCAGGAAGGGCTGCCAGCCAGACGCGGTGAGCCATACGACGATCGTTTC
TGCGCTGTGCAAGCTGGGAAGGGTGGACGAGGCCAGGAGGGCCGTGGCAGAGACGGTGCC
TGTGTGCTCCTCGTACAATGCTGTCGTTCACGCGCTCTGCAGACAATTCAGGATGCGGCA
GGTGCTCTCGGTTATCGACGAGATGATTCATCGTGGACTGCACCCAGAACCTGCCACCTA
CACAAGCATGGTCGACGCGCTCTGCAAGGCCGGTGAGCTGAGGATGGCTTGCGCCATTTT
GGCTAGGATGGTGACCGAAGGTTGTGCTCCAAATGTTCAAACATTTACTGTGTTGGTAAA
AGGGTTCTTCGATGCTGGAAAGGCACATGACGCAACTGACATGTGGAATTGGATGGTGGC
TGAAGGATGGGCACCAACGACAATCTCTTACAATGTTCTCATCCGTGGCCTTTGCCACAC
TGGTGACCTAAAGAGGGCATCATCTGTTTTCAGTGGCATGGAGCAAAACGGCTGTTTTCC
TGATGTAAGGACATATTCTACTCTCATTGACGGATTCTCCAAAGCAGGGGACGTAGATGG
TGCCATGTCAATATGGAATGACATGACAAATGCTGGTTTCAAGCCAAATGTTGTTGTTTA
TACAAATATGGTGGATGTACTTTGCAAGAAGGTGATGTTTGATCAGGCAGAGAATCTCAT
TGATAAGATGTCAATGGAAAATTGTCCTCCTAACACATTGACATTCAACACGTTGATCAG
AAGCCTGTGTGACTGCGGAAGAGTGGGAAGAGCTCTGAGTGTGTTCCATGGTATGAGCAG
ATATGGATGCTCTCCGAATGACAGGACTTACAATGAGTTGCTTCATGGTCTTTTCAGGGA
AGGAAACTGCGAAGACGCCCTTCGAATGCTGATCGAGATGCTAAACCATGGGCTTGAGTT
GACTTTGGTATCTTACAACACTACTATTAGTGGTCTGTGCCAGATGGGAAGGAACAAAGA
AGCCATGATTCTTCTTGGGAGGATGATAGTTCAACAAATTCAACCAGATGCATTCACTTT
CAATGCAATAATTCATGCTTACTGCAAGGAAGGGAATGTCAAGGCTGCTGCTTGGATGTT
AGGTCGAATGGATGCATGTAATTGTCCACGCAACATAGTTGCATACACAACTCTGATGTC
AGGGCTTTGCAGTCAGCACAGGTTGGATGATGCCATGGTCTATCTCTTGAAGATGTTATA
TGAAGGTATATGTCCAAATGAAGCAACATGGAATGTGTTGGTCCGTGGGATATTTACACA
CATGGGCACCATCGGACCAATGCACTTGATTGAGCATATTTATGAAGATTTATAAGAGTA
CCCCGAGAGAACTTCTACAAACCTCGGGCACCATCAGACAAATGTACTTGATTGAGCATA
TCCTTGAAAATTTATAAGCATCTATTTGGAGAGTCTAGTGGTGATATCATCGGACAAGCA
GCAAGTTCTCTTTCATAGTTCACGAGGTATGTTATATCTGATAATACTAATGATCTTTTG
GTATTATAAATATATTTCTCAAGGCTTCATCAGAGGCACATTCAAATTTGCAAGTTGTTA
TCTTCAGTTTGGTCAGTATGTAATATGTGCATGGTCAATATATTTTTAGGACACATGGAT
GTATAGTCTGGGACTGAATCATTCATGTTCTGCCTTGCATATTGGCCCTCGCACAGTCAT
TAGAAGGAGTAGTCATTAGAAGGACTTCATTCCTAATTTTTGCACCGTAGCATCCCTTTG
TTTCAACGGGGCGCACGCGACATTAATAGAGATTCTCCATAGGTCAAAATACTCGGCGTA
GCACAAAAATCTGTTTTGATTGTTATCTGTGCGGCACATATGTAAATTTCGGAGAGTGGG
GCAGATTTTTTTGGGGGAGGGCGGGGTATACATACACAATGCACCACACAATATGCATTT
TATTGCTTTTATGTAGTCTCGATTACCAGCGTTCAATAGTAGATTTACAATAGTACTCCG
GCATGTGACCTAACAAAACACATAGCTTTACTTTGCTTTGCTCGCAGCCCTCTGACCCTC
CAATGTTTTGTATACTTTATCAATCTCAGGCTGCACATGAAGAACAGAGAATTAGAATTA
CTTAAAAGAAGTATAAGAGGACATTTATGGGCAAAGCTAGGATAAAGACCATAGAAGCCA
GCTCTACGACATAGGGATCACCAGGTTGGATCTGGATGCTATAAGTTTAGCTGTTCATAG
ATCAATAGTGATCTTGTATGGGATTTACCAATTTTATTGGGTTCACTTGAACCCAATGCT
AATACACTGGCTCTTACCCTGGAAATTAGTGAAAACAACAAAAGTCACACTGCAGCAGAT
GAAAATATATTACCTGATAATACTTTAGCATGTAGTTTCTTCTCTTCTTCATTGTTGCAG
TGACCAAATCCCTTTCAATGTCAAAAGGTACCGGGTCCAACATTACACCTTTGATGTACT
CGAAACCTCGTAGCTGATCCGAGACATGCAAAGAGGTTTACATATGCGATGTTTAGAGAT
GCAGTGAAGATTTAAAATGAAGGAGTCTACACTCTATAGAAACTTCTGAGTTCCTCTTTG
TTCTAATGCAAAAGTGAAAACCAAGTTGACCATAATGGTAGGAGAATTTGATGCGTGACA
TGATGAATCATACTAATATGTTTAGTGTCCAATGTAGAAGTGAATAAATGGCCTTACCTT
GTTCTTCTGTGCAGCCGCTGCGAGCTCTTTAAGGATATGCTCTTTAAGGCCTTCAGATTT
GCATATTTCACTGAAAGAGCCTTTGTAGCCATTTGACCCTGCCCACTTCATGGTGTTTTC
TTCATGTGGGTTAACTACTGCCACTAACATTGATTTGTAGCTGTCCCCGTACACCCAGAT
CTACAAAATCACAGTATTACATTGTATGTAGTGCCATGCACTCTCAATATAAGCATATGA
TTTCACTGGGTTTGTCCTTACATCTTCAATAATTGGAGGGAAGACATATACTTTCTCCAG
ATACTCAACTGCGACATACTCCCCTTGCGATAGCTTAAATATGTTCTTCTTCCGGTCGAT
AACCTTCAGGATTCCATCCGGGGTCATCTCTCCAATGTCTCCTGAAAACAAGATTGTGTC
AGAACATGATAGTTTAAACTTTACCTCAGTCTCCTGTTTAAATTAAAATTGATTATTCAC
CTGTATGAAACCATCCATCAACCATGACCTCGTTTGTGAGCTCAGGATTTTTGTAGTACC
CAGTGAAAACAGTGGTCCCTCTAATGAGGATTTCACCACGGGAAGGAACGCCAAGTGGAT
CATAACCCATCTCGGGAACTTCTTCCAGTCGCAGTTCAGTAAAGGTGGCGGCAACACCGG
CAGTTCCAACCAGGGACATGTCATCAGGGTAACCGACTGTGCTAGGTCCCAGTGTTTCCG
TTAAACCTGAGCAAAGACAACACAATCTAACGTTATACTGGTTCCTTTTCATTGACAAAG
GGACTGATAACTAAACCATGCAATTTTGGAACATAATATGGAGAGAAAAAAATATGTGGC
ATGTTGGTATTTGTGTGAATAGGAAAAATAGATGTCCACAATCTTTCACTTCAAGCTGTA
AACAGTAATGTGCAATAAGTTAAATAGTCAACACAGAAAGATGGTTGAAAACTCTTAAAA
TTAATGTTTCCAATGGGGATAGGATACAGCAAGGAAACATGGACCCAACCTACATACTCC
CTCCGTCCCAAATTAAGTGTCTCAACTTTATACTAGCTCTAGTACAAAGTTGTACTAAGC
TCGAGGCACTTATTTTGGGACGGAGGGAGGATGAAATAAGCTTTTTTAGGTATTTTGTGT
CTTTCTCATACAGGTCA