morexGenes - Barley RNA-seq Database

Contig contig_73398
Source Contig contig_73398
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_73398 (7243 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_73398

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_76897	3	674 bp	MLOC_76897.2	Available	Available	LOC_Os07g30800.1, FRAME:+2, EVALUE:2e-20, 13107.m03104 protein immunophilin, putative, expressed
MLOC_76898	1	2942 bp	AK354520	Available	Available	None
CDS Structure of MLOC_76897

CDS Structure of MLOC_76898

Contig Sequence (7243 bp)

>contig_73398 7243 assembly3_WGSMorex_rbca.fasta
CGGGCCTGCAGCAATACATCGACTCGACGCCTTCCGTCTAGAGTTTTACCGAGCCGTTCG
AGTTCAATCGTCGTGTTAAGCTAGCTCCAATTCACGTGTATGTACACGGCCAGAATCCAT
TAAGCTGCCTGCTAGCTTGCTGCCTAGCTAGCTTGCACTTCGTGTTTTGGCTTCCGAAGG
ATACGAGCTAGCACTCTAAAACCAACAATGTCATCTCTGGGTAACAGTTTGCAGATTGCT
TGACGAAGGGACTAGAACAAAGGACTGTGACTTGGCATGTGACAAGATGGGAATGATAGA
TATCTACCACCCATCATGAGGGGGAGTGTTGAACCGTTAAGGGCCCAAGCCCATCTAGCT
TTGTCATTTAGGGCCCAAGCCCATGTGAGCAGGCTGATCTCGAAAGGGGCATCCAGTCCT
CCCGTTTCTGTGTGAGCCGCCACACAAGTGAGTCGCGCGAGCCACCAGACACGAGAAAGA
ACCCATCTGAAAGTACTCCTCTCCCGATTCAATACCTCCAAATGGTCAAACTGATAAAAA
GGTAATTTGTTGCGTAGTTAACAGTAGGGAACGTGTGGAATAACTACCCCGTGCACCAGG
ATATTTTGTAAGTACTAGTCCTCAGTGAATGATACCACATTTCTCTTGAACTCTAGTGAA
TGATACCACATTTCTCTTGAACTCTAGTGAATTGCTAGAATTGACAGATGGGCATTATTA
AAAAATAAGCATCCATGCTCATCTTACTGCTGACGACATCATTGCTAGAATTGATAGTTA
AGTAAGACAAACCCTTTTTCATTTGTTGAATCTAGCTGTTGGAGTAAAGTGTCAATCAGG
GGGGTTGTGTAGATTTCAATAGATTGGCACAAAATAAGGATAGTGCACAACGAACCCGCT
TGGGTAACAACCGCAAGGTGAGGCTTCACTATGTGGCATGCTGAAAGGATAACAGGGCAT
ATTGGGCATTGCTTGAATCAAGCTGATACGTACTGTTGTAAATACATTTAATGTTTGCTC
GAAATATGGTTCAACATGCCGCATTGCCAGTTTGCCAATGCCATTTGTTGACCAGTAACA
GAAATAAGTGCCACTTTAAACATTTGCTACTCTAGATGTTTCAATTCAATAATTCATAGC
TATTCAACAAAATAAGCCCCTCCAAGCATTTGGTTTGTTTAATTGGGACTCTCATGAGCC
ACTCCAAGCATTTGGTTGGTTCAATTTGGCCTCTCATGAGTTGATTCACCTAATTGACAT
AGTTAAAACGCATGTGACAAAAAATACCCCTACTCGCTTCCACCGAACCACTTCAGCACA
GAATTTATATCCACAATTCAGCATCATCCTCAAAACATCTTTTTTACGGAGAGCAGGTTA
GCTTGATGCAAGTGCCCTGTGCTTAACTAGCCGACCAACAGTATCCTAGGTCCAAATGAA
AAAAATGATAGCTAAGGGCAGTATAACCATATAAGGCCGGCGTTCATCAAGCCAATTCAT
GAGGTCTCTTAGCAATTTAACATAGAAACGTGAAATCAAAAGGGAAAGTATGACACACCA
ACCAAGACCTGCCCTGAACTAACGTTCATCAAGCTGAAAGCTGACAAGATGTGCCCTTAA
TATGAACCAATTGTACATAAACAACTTTGCAAACACATGGCTACGATTTTATTGTTGACC
AGCAAAAGAAGAATTGGGTTTTGTAGTTAATCTATACTTCTGGTGAACTACTGCTTTCCT
TAATAAAACATTTATTTTCCAGCAAGTATTTAATTTCCTTGACAATAATGAACTAGCCTC
ATAAGAACAATGGCTGGTCGCTAAGATATCATAACACATATTTTATATTCTGGTCGATAG
ATGCCATAAATAGATTGAACAAACGTCAGCCTAGATGATTTAAGACTAGTGTCTTGATTT
ATTATTATATTGTTCTTACTCCTATAATATAGGAGTAGACCATGTGGCCTGTTTGTAGTA
CGTATCAGCTATTATATCACAAAGCCACAAGAGAGGCTGGATATTGCAATTCATTGGGAC
CTTGGATCATGGATTGCCAATTTTTCATCTTTATGAAACAATCGGCTATATATTCAGAGA
AGATAACTAAAAAATTACCTCCAGATGACATTTACAAGATCATCCTGGCTTGCTTCTGGG
CTTATTGCAGTATCATATTTCACAATGTTCCCATAGAATATTTTTTCTAGCTCTTTCATC
CATTTTATCAATAACAAGTTGACCTGTAGAGGCACTAGTATGTCACACGCATAAACTTTC
ACAAGAAATAGCAATAGCATGCACAAAGAGAAGCCAGTCTTCATATCATGCAAGACGTAA
TGAAAAAAATGGCCAACACTATGGATTCCATGCTTTATAAGATTAGTTGCATTATTCATT
CTTATTACACAAAATAGTGATGTCTTTTCAGCATTTTACACATAATACCAGCTTTCTCTC
ACAAGAAAAAGAAGTTCTATTTTTGTTCCATATAGTTGTAAGTCATGATAATCGGTTAAC
AAACTGCCAAAAGTTTGATCTTGCTGTTTTGTACTCCCTCTGTTTCAAAAAAAATGAAGT
TCTAGTTTTGTCCTTAGTCAGACCTTTTGAAGTTTGACCAAGTATATAGAAAAATACGCT
AATATCCTGAATATCAAATATATATAGTATGAAAACATATTTTGTGACCAATCTAATGAA
ACCAAATAGGTTTTGTAGACGTTAATATATTTTTCTCTAGACTTGGTCAAACTTAAACAA
GTTTGACTTAGGACAAACCTAGAACTTCAAAAATTCTGAAGAGGGAGTGCTAAACTATGG
TGAGATTCCATCTCCCTGTGCCATAAACAACCAATGCAAAAATGGCAGTACAAATACAGC
CAATTCAAAAATGACAGTGCAAATACAGCCAGCGCAAAAAAGGACAGTACAAAGACAAAT
TGGAAATGCAAATAACCAAGAAGAACATCAACACCCACATCATAAAATATCCAAACTTTG
CTCATATATTCCAAAGGGAACTAGGAATATTAAGATGCCAACGATAACATGTAGGTTATG
CTTCTTGCCACAAGTCCCAACCCCAGACAGATCACACTTTCCAAGTTTGACTCATGTGGT
GTGCCATAGTTTGATGGCATTGCACCTAAGTATGATGCACAGCTGACACACTAGTTTGGT
TCCTTTGCTAGACCGCTCTCTATACGAGTGTGTACAACTGTGTATCACATACACAAATGA
AGAAGTATCATTTAGATAGGTTGAGCATTTCTCCAGTTCTTTTTTGACACTGGTGGACAA
GTATTAGACCAGCTAGCTTTATATCTCGCAATTCTAGCAGAAAATTTATAAATAAGTCGG
GCTTCACATGTATATGATGGTCATGGTGTGATGCTAATCAACAGTAGTTCATTCGGACAA
TTAATAAGGAGGACTAAAACCATCAAATCCAATAATTAGGATAACAGGAAATTTGTGGAT
AATTTAACCTCAGATATATATCAATCTTTTAGAATTATTATGGATGACCTACCCCAGCCT
TAGAAACTCTGAGCTCTACATCATGATTGTAAGTTTCATAGATGTACTGTCCAAATTTAA
CACCATCCTTTCCTTCTTCCTTCAAGCGACGTAGAACGAGCCACATATGGAGAACAAGCA
ACGAAAATGTTGTTTTAAATGTTTTCTCCAACTGAAACACTGCAAAAGAGAGACATCAGG
AATTGTTGTACATAGAAGAGAACAGCACAGCAGCAGCCGCAGTACTTCGTGTCTAGATCT
ACATAGAAGAGCAGCAGCAGCAGCAACACAGCAGCAGTAATTGTACATCACTATCTAACA
TCAAAGGAGAGCAGCACAGCAACAGTACTAGTTGTACATCACATAAGAGAACAGCACAGC
AGCAGCAGCAGTACATCAGCATTTACATAACAACACATCATAGGAGAGAAGTTTTGGGCC
AAAATATGCTGCCCAGTTAATCGGGCCTGAAACCGATAAATCGTCTTGTCAGACTAATTG
GGCCGAATAGGCCTTTCTCTTCTCGCGCGCGCGCGCGGGGGGGAGGGGGGGGGCAATAGC
AGTTAACTGCAGTTAATCGGCCGATATTTGTAACAATGGTCACATGCACTTCAGAATATC
AGAAATTAAGTGCTCATTGTTAAATTAATGTCAAGATCAACCATGCAGAAAATCATGGAC
AACCAGAGGTCTCTTTTGTTAGTACTAAGTACCAGAACATGCATAAATCTTATTACAGCA
GAAATACAAAAAAAAAAAGCAAATAGGAAAAGATCAAGGAAATGCTGAAAGTGCAAAGGA
ACGAGTTTACCACCAAACACAGAGGTGTGTACCTTCATAGATATCAGGCTTGTCAACATG
AGAAGTGATGCGGTGATAAACAGTGTTTGCTCCTCTGATGGACTTGCTTTGCTTACTGTA
GAACAAGAGCAGCGTGAGCATCAAGCGCTTAATGCCCTCATAGTGTGGATCTTCCGCTCT
AAGAGGAGAATCAGGAGGCAATGCCAGTGAAGAGGGCTTGGACAGGAACATAGAATTCAG
TCGGACCTATAAAAGAAAGAATTCATCCTTAACAAGAGGCATATAGGAGCTACAGATATC
AGTTGTAATTATTAGTTAAGCCTTTGTAGCATGTGTGATAGATATGTAGTACACACTAAG
TAGCGGCAAATATCACTAAACAAAAAAAAAACTTAGCCTGTATAAGTAAGCAATAAACTT
TTTGGACGTTGCCATAAAATCCTTTAATTTCTACACGCATCCACACAAAAGGCACATGTT
TACATATCAAAAGGATAAAAAAAACAAATGGCTTGTTTCTGCCAATTTCTTGAAAACATT
CTAGAAATGCTAGGTGGTAGATTACAGTTATCCATTTAACCAGAATAGGAAATAGACGAC
ATTCAGAAAACCTTACAAATTTTGAAATCTATCTACATTGCAGAAGGACGGAAGCAGACT
ATGAACATATTCCATGTTGCAAATCTACGTGGTTAGGGAGCAACCAGACCTAGAATGCGT
CGATCCCAGTAGGTACTTGCAACAGCGAGCTGCCCTGGACAAAGGGGCCGTTGTAATCCG
CCAGATCACACTATGTGCCCAACAACAATAAGCGGCAAGAATGGCATCTCGGGGATGCGG
TCCGTACCTCGGGCCACGGACTGGCGGAGGAGGCCGCGCTAGGGCTGTGCGACGTGGCGG
CGGCGGAGGCGGCCTTGGAGAAGGTCCTGGACAGAGGCTGAGGAAGTGGCGAGGGAGGCT
TGGAGAAGGCCCTAGAGAAAAAGTGGGAGGCGGAGAGGCGGGAGGCGACGGCGCGCCATC
GCGACATGGCTTCCTTTTTCTGGTTGCCGGCGGGGAGAAGCGGCCTACCGGTGCGGTGCG
TGAGGTGAATCGAGACTCGAGAGTCGAGAGATGGTTATGGCTGCGGACACGCTGCGCGGG
GTCCAGCCACAGAGGAGAGACAGGTATTCTTTTGGCCACCGACATGTGGGGCCCTCGCCC
CCGCGTGTGTGTGTGTGGGGCTGGGCCTGGGCCTCCACCTCGGCTTCTACACCAAGCTCA
CCATCATCATCTCTCGGCTCGCTCCCTTTAATTATCCCCTCCCCCTATTTCTCAAAAAAA
AAAACTCCCCTTTACTAAAAAAGATTTATCCCTTCCCTTGCTTGTGCTTCTTCACCTGTG
AGTGCGAGTGCGAGTGCGAGTGTGAAATGGGTGAAATCAAGTGTGTGGGATTGGAGGGGA
AGGAGATGGAGCTGGTGTCCTCCTCCCGCTCCATCTTATCCTCTTGCAACCGTGAGGCCT
CCCCTCCCCTCCCCTCCATCTTCATGAACAATGAGCTCTTCATTTGCTCATTTTTCTCGC
ACTTCTTGCATGATTGGTTGCTTCCTTCACGTCCACGACAACATCAGCAGCTACGCGCCA
CGGGAAGAGGCTAGTATGGTAAATCATCAATTTTGTTTTACCTCACCTCTCAAGAATCTA
GACCCTCCTTTTTTTCTTTTTTCATTTTCTCAATTTTTTGGTCGTTAGCCTTGCCTGTTT
GGTTATCTGCTCTAGAGAAAACAAAAATAAAACAATTTCTTTTGTAGCATCAAGAATGGC
ATGTATGCACATTTCATCGTTATCTTCTGTTGTATTTGACGTGGTTTTGTTAATGCAAAC
AATCCAGTGTCTTGGGTGGAGACACGAATGGTGAGCTCAAGATCGGGAAGTGGGCGGCTC
TTGCTCAGTTCCTTGCTACACCCACGCTCTCACTCGCCTTCTTGGCCCAGTCCAAAACTA
AAACCATAAATCCTTATGACGAAAGACGCTTGCTTCAGCAGAACAAGAAGATTCACGAAG
CCAACCGTGCACGTGATGATTTCCCAAACTTCATCAGAGAAGGTGATCATGTACATTCTG
ATGATTTGTACAACTTATTTATGTAGCATGCCTCAACCGGTTTTGTTGTCACCACCAAAA
TTCTTTTGGATATAGGTTGCAACTGAATTTACTTGATGCCATTGTCAAAGCGTCTCAACC
CCCGACATTGGGAGCCCGTAGGGTTTATATTGATTGGTTTGCTTGTGGTACAAGAGCTTG
GGTGGTTTAAACCACCGGGAGAGATTTACATGGAGGGATAGGAAATAGAGACGTGATAAA
TCAAATAGACTACCTACCTCCTAACAACCTCTAGATATGTGGCGCAGCACATAGGTTAAC
ATATACTTAACATCCCCCTTAATCATAACTTTACTAAGTTAAGACTATGTTTAAACTCCT
CAAATGGTCTTGAAGCCAATGTTTTTGTGAAGCCATCTGCAACTTGACCTTTGGAGTGAA
CAAATCTGATTTCTAACTCCTTGCTTGCAACTCTTTCTCATACAAAGTGATAGTCAATCT
CAATATGATTGGTTCTTGCATGAAACACTGGATTAGACGATAGGTAAGTGACACCAAGAT
TATCACACCAAAGACAAGGAGCTTGTGTATGATATATCCCAAGCTCCTTCAGCATTGACT
TGACCCAAATAATTTCAGTTGTGGCATTTGCGAGTGCCTTATACTCTGCATGTGTACTTG
ATCTCGAAATTGTTGTGTGTTTCTTTGCACACCAAGAAATTAGATTAGCACTACTGGAAT
TGAGAAATTTGCCATCTGCCATGCCTTTGTTGTCTGCTGATGCATGGCAAAGATCATCTT
TGCCGTCAGCTGGCACAAAGCAGACGGCAAAGAGGTTGCTGAT