Contig Data
morexGenes
Links



Map Locations of contig_73362 (6264 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_73362

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_76890 1 942 bp MLOC_76890.1 Available Available LOC_Os03g13590.1, FRAME:+3, EVALUE:3e-52, 13103.m01576 protein potyvirus VPg interacting protein, putative, expressed





CDS Structure of MLOC_76890






Contig Sequence (6264 bp)

>contig_73362 6264 assembly3_WGSMorex_rbca.fasta
GTGCCTATGGAAAAATCCTATAAATGTAACTTANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAATTACCAAAACCACATATGGAGGTATATGCTCTAACAGTCGTTGTCCTGAATATA
AAAAAATTAATCATCGTGGAAGGTTGCTAGGGATGATCGTTTCATATATAACCACAGTTG
ATTCCCAGGATCCATTCATGGTGCTCATAACGCGAGTCACATGTTGATACTTGAGACACT
GGATCTAGCCATCAGACATGCTCTCGCTGAAGATGTGGCCCATGTGCGGCAACAGACAGA
TTAACTGTTTTAGTCTATCAATGACAGTAATGATGCTTCATATAGCTCCAGCTTGCAGGG
TTTCACCACATTAACCAACGATGCAATCTTCATATCATGGATTATTTGGAGATTCAAATA
ATATGCAACTTTTGGGAATTACATCGACTATAATGATTCCTATAGGTATTTGGTATTCTA
TACAACAAAATTGCGAATCTGAAATTAATTTGACACCTTCTTTTCTTTTGTGGTTTTTTT
AGCATAGCTCCAGCTTGCAGGGTTTCACCACATTAACCAACGATGCAATCATCAGATCAT
AGATTATTTGGAGATTCAAATAATATGCAACTTTTGGGAATTACATCGACTATAATGATT
CCTATAGGTATTTGGTATTCTATACAACACAATTGCGAATATGAAATTAATTTGACACCT
TCTTTTCTTTTGTGATTTTTTTAGCAGGATTATGTAAGTATTGCTCGGTTGATTTCACTC
CACAAATTGATACTACAAAGTTCACAAATATCAGTGGGTGCATACCAATAGTTCTTTAGA
TGAAAGTGGCAAAATGTATAAGTTCTTAATCGAGACAGTGTTGGAAAAGATATATACCAG
TTACAGGTTAAAATATTTGATGCTAAGTTGCAAGAAAATATACCAATTATAAAAAGCGAT
TTATTATTTTGTACTATTTGAGTTATTGAGTTTTCCTTAAAAATGAAACTAAAATAATTA
CAGCTACCATAACAATGATCTTTCTTACATCATTTCCTTTAAATATTTTCTCCCTCCTTA
AGGATGGAGTTATTTTTTAGATTTTATACGAAAAAGAAGATCTGTTGATTAAGAAATCAC
TATTTTTCATTTCGATGAATCTACCCTTCTAGAATACATAGTATGTAGCAAAGCAAATGT
GATGCTGAATTAACAGTTTATTTTTTCCTTTTCGTATTACACAGCCGTGATGATATTATA
GCCATATGGCTATAATAAGTTTTCTTAATCCTTTCCTAAAATCAAACCGTTGTATTCTCC
TTTTCCTGTGTACTCCCTTTATGAACTAAATATGGACTAAATGGATGAACAAAGACTTAA
AATACGCCTACGTACACCAAAATTAGAAAAAAGTTATAGTATCTTATTGTAGTGATCCGA
GGGAGTACCTTTAGTTCTAGAAACTGTAGGTGTTATCTATGGTTCATTTTCTTATTTTTA
AAACATTAGTCCGTTTAGGGATGTGAAGCTGCGGTATTCCTTTCTTCCTTTTTAACCTTA
TGTATTTAAATTACTTTTGCTTACCGTGCAATACATGTGTTGTACATAACTACTCTCTTC
ATCTTAAAATAATTGACTCAACTTTGTATTAACTTCATACTAAAATTAGTATAAAGTTGA
GTCACTTATTTCGTGATAGAGGGGGTACATATTAGTACTTGCATATGAAATGAATAGCCA
AATGTTTAATCTGATAGGTGTTTCAAAAACTAAATAAAAAATATGCAACCTAAATTAATG
GACGTGGTCTTGAATCATGGTTATTGGATTAAGAGTGTGTTTTTCTTTTCTTCCGTTGCA
ACCAACAGACTCTTTTGCTATAACAGTTAACAACGGGTGATATAAAAAGAACAAATTACA
GATGGAACACAGCAGCTTTGGTCTGGAAACCATTCCATTCTAATGGACAACAACGACAAC
GAATGAACGAATCTCCAGGCATTCAGGAGCGGCGGATGGTGATATCTTTTTTCTTTTACC
GGGTTTACCGGGGTTCCTCTACACCCACATCTTCTTTGTGGCCTCCATCCGCTCGAGCAG
GCCCTGGATCTCGGTCTGCATCCGCACATTCATCTTGTGGTAGTCGTAGTGCGAGTTCTC
GAGCGTCTTGAGCTCCTCCATCTTCTTCCTCCTCTTCTCGTCCGCCTCTTGCAAGCACAG
CTTCGCCACGTTCGACGCGTACTCTTCCTCCAGGCTCTGGTTTCTGTTGCGGACCATCTG
CCGGTAGTTCTCCACGTCCTTCCGGGCATCGTCGGCCAGCTTCTGGAACAGTTTTGCTTC
GGCTTCCTTGCACTTCACGACGGTCTCAAGGGTGGAGGCTTCGTCGTCCTTTGAGGTGGT
GCTGAAATGGTTTCGGGGCGGCGGCTTCGAGATCGGCATCGTCCTCCTCCTCGTCCTCGG
CGTGCCAGCTGTTGCCGTCGGCAAGGTGGGCGAGCACGGCGGACGCGGAGGCGCCCCTGT
AGTTGTACCCGCCCGTGGCGGCCGAGCCGTCCCCGGCGACGCCGCCGCCGCGCCAGGATA
CGAGGTGGTGGTTGAGGGCGACGTCGGCGCCGCGCAGCTTGCGTGCGCCCTTGGCCTTGT
CCGACGCCTTGGTGGTGGCGGCGGCGGGCGGGTGCTAGTGGCACGCGGCGCACCGCATCG
TTAGCCTATATAGAAAAACGAAACCTTATCTTAAGAGAAGTATCTCAGATGGAATACTTT
AAAACACGAGGTTCTTTTTATAAAAAACGAAACGTTTTCCTGGTTTGTCACTTAAATGTG
GACGGCGGGTTGAATACCTAGAAGCAGAGGGTCTTTTTTGCAAAACAGCCAGCGACGGAC
GGCAAAAACGGTACATGCTTTATTAGTAGGGATAGATATGATACGTATAATTTTTCAAAA
ATATCCAAATACATATTTTTCAAAATGTAAATTTACTTATTAATATTTTTTACAAATATT
AACCGTGTAAAAAAGCAGTGTTTCAGATGTGTAGAAAAAAATGTACAGTGTGGTATGGAA
ATAGGCTTAAAAATCATCTATTTGAAAATAATAATAATAATGTATTTTAAAAGTATTAAA
CATATATAAAAATACAAAATACTATTTGTGTATACAAAATGTACAATATATATCTAAAAA
AAGCAGCCATCAAAACATTTGGAAAACTGTTTTCAGGTATTTTAAAGATGTTCAACATAT
GCAAAAGACAATTCCAGATGTATGCAAGAATGTGAAATGCGTATAAAAAAATATACAACA
TAACATAAATTTGAGAAACAAATTAATATGTATAGAAAAATCAATGTGTACAAAATATGT
AGATGTATAAGGAATGTATAACAAAAAAGAGAAAGAAAACCATAAACAAAACAGACGAAT
ATAGGTAAATAAAATAAATAAATGAAAAATAAATTCAACCAATGAAAACACCAGCGAAAA
CACACAAAAAGGAAAACATATTGTTTGTTTTCATTGATTACCATTTTTTGTTGACAGCTT
ACCAAGCTGATTGCTTGGTGAAAACATATTGAAAAGCGATGATAACTATAGAAAAAGCAA
AAAAAAATGTAAACCAATGGAACTGAAAAGAAAATATATAGAAAAGGTAAAGAAAAAATC
AGTGGAAACCACATAGAAAAGAAAGATTTCTTTGGGGTGAAAACCACAAAGAAAAATATT
TAAAAAGAAAGAAAAAAACAATGTAATCGCACCAGTCCAACCAGTAGAAAAACTCTACAA
CGAGCAAGCAAGCGAGGAAAATAAAAGAAAACTCAAACAAAATGGGCCGGCTAGCTCAGC
TACCCAAAAAACTTTGAGGCGAGTCGTAACACAAATCAACATAGACCACACATAACCCTC
GCGTCATACAACCCGCGAGGCTCTAATGGGCTTGGCTATCGTATGTTTATTTCCTTAAGA
AAGTGGGTCTATATACATCTCAGACAAATAAATACGTGAGGCCGGGTCTATTCTGGAAGC
CTAAGACTATTATAGAATCACACGATGCTTTGCACACATATGGAACATGCGACTCATAGG
CATAGTTCGATTGACCGAAGTTTTTGATCGTTCGATCGAGCCTTAGTCAACCGTGCGATT
GTGTCACCTTCGTTCCACCTCCTTCGCTTCCTTCTATGCAAAACCAACAAGCACACATCA
CGGGTGGCGCGACCACTGTCCCCCTTCCCCGTCGTTGCACTTCCACCTGCCACCTCGTCC
CCTCGTCTAGAAGTCATCCCTCCATCGTCCGCTATGCTGGATGCGCTCGTTGCCCTCATC
CCCGATGGTAACAACCCCGTATTCATCCTCATCACCCCTCACCACTGTACTTCGGTTGAA
GCTTTTAAAAAGACGGTTGTAGCAAACGAATTGGCCACATCCATAAAAAAACTAAAGCAA
CAAAAAAAATTCTCCAATACTCAATTGAAGCAAAAATCTTTGCTGGTTCCAGCAAAATCG
AAAGATGGTGGTAGAAAATTTTGAGGTTAGTTCAAGAAAAATCAAAACAAAGGTGGTAAC
AAAAATTAGGACTTGTTCTAGCAAAAAGAGAACTTGGTTCGAGCAAAAAATCCACCACAC
CAGCTTTCCACCAAAAAATTGCCCCCGCTGATATCATCCCGAGCTGCTAGTTCAACAAAT
CTACCCACATGTTGAAGCTTTACCAAACAAATGGTGGTTGCCGAAGGTAGTAGTTGTTGT
TGCCGCTAGTTGCAACACTGGATGGCTGGTTCAAACACTGGGCTGAGTGGGTTGTAGCAG
AAACTAGAGGAAGCTGTTGCCGCGGGCAACTGCTGGGCTGGCTGGTTCGAGCATTTTTGC
TAGCCGTTTGCACCAAAACTAGATGCTAGTTCTAGGATGCCATCCGCGCGACACTGTTGG
GAAATGTCGCATGGGAAAGAAAATTTTCCTACGCTCACCAAGATNNNNNNNNNNNNNNNN
NNNNNNNNGAGAGGGGGAGTGCATCTACATAATAGGCCGCTGAGCGGAAGCGTTAAGAAA
CGTGGTTGATGTAGTGAACGTCTTCGCGATCCAATCACAANNNGTCCCGCGATCCAATCA
CGAACGTCACGATCAAGTGTCGAACGGACGACACCNNNNNNTTCAGCACACATACAACTC
GATGAAACCTTCACCTTCTCGGTCCAATGAGAGATGGTGAAGAAGTAGCTTGAGTTCTGT
GACAGCACGACGACATGGTGGCGGAGCTGTCCCGGTAGGGCTTCGCCAAGCGATGCCCCG
ACAGAACGAGAGAGAGGAACTATGATAGAGAGAGAGAGAGAGGAGGGCAGCACCGTGTCT
GTTTTCAGGTGCGGCTGCCCTCCCTCTCATCTAGTATATATAGGAGGGAGGGAGGAGGGG
TGGCGCACTAGGGTTTCCTCCTAGGGTGGGGCGGCGGCCACCTAGGTGGCTTCGTCCCCC
AAGTTGGGCGGAGCACCGACCCACTCTAGGCCAACCCACCTCCTTGGCCGCATGGGCCTT
AAGTGGGAGGGGCGGCCAGCCCACCTGGGACTGGTGAGCAACCTCTCACAGCCCATGGGG
CCCTACGGGGCAGGTGGACCCCCGAAAGTCTTTCAGAACCTCCGTCACAAAACCGGTAAC
CTTCTAAAACTCTTCCAGAACTCGAATACCAACTTCCCATATATCACTCTTTACCTCCGA
ACCATTCTGAAGCTCCTTGTCGTGTACGGTATCTCATCCGGGACTCCGAACAACCTTCGT
TCACCAACACAATAACTCAACTATATCTATATCATCACCGAACATTAAGTGTGCAGACCC
CACGGGTTCGAGAACTATGCATACATGATCGATACACCCTGAGATCAATAAGAAATAGCG
GTACCTGGATGCCCATATNNNNNNNNNCATATTCTACGAAGATCTATATCAGCTAAACCA
CGATGTCAAGGATTCAGCTAATCCCGTATGCAGTTCCCTCTGTCCATCAATATGTTACTT
GCGCGCGATTCGATCATCGGTATCTCCATACCTAGTTCAATCTCGTTGAAGACAAGTCTC
TTTACTCGTTNCGTAATACAAGATTCCGTGACTAAATTCTTAGTCACATTACTTGCAAGC
TCATTGTGATGCTGTATTACTGGGTGGGGCCCGAGATACCTCTCCGTTACACGNNNNNNN
NNNNNNNNNNNNNNNNCCATGCCAACTCAACAGACACCATCGAAGATACCTGTAGAGCAT
ATTTATAATCACCCAGTTACATTG