morexGenes - Barley RNA-seq Database

Contig contig_72546
Source Contig contig_72546
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_72546 (7316 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_72546

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_76721	4	766 bp	MLOC_76721.1	Available	Available	LOC_Os04g54240.1, FRAME:+2, EVALUE:2e-29, 13104.m05607 protein wound induced protein, putative, expressed
MLOC_76722	1	817 bp	MLOC_76722.1	Available	Available	None
CDS Structure of MLOC_76721

CDS Structure of MLOC_76722

Contig Sequence (7316 bp)

>contig_72546 7316 assembly3_WGSMorex_rbca.fasta
CCTCGCCCCAGATCCAAACGCATGACAACCACAGAAAAAAGTGGTTAATCCCTGTCCCTG
GGAGGATATCCCTTCAACAAAGCCGCGGTGACAGGAACCATTTTCTAATCGTCGTGGTGG
TGTATCAGACGCTGACACGAAGCACGCGGCTGGCCCCTTGGTATGGTGGAAACCATGTCC
CTCCTCCAGCATATTCAATCTTATCTCTATGCCTTGTCTGGTCGTAACGGACAGAACCAT
AACCCACTGTACGGGAACGAGAGCGAGAGCTGCAACGCAAGCAAGCGAAAATGAGCTCTC
CTGGGAGCACCCGGTTTCCTGGAAAACCAGCGCCCGCAGGCCGCTTGTTTTGTACCGGCC
CTCCCGTATATAACGCCGTCCCACACCCACTCTTCCAACCATCAACACAAACCACCATCA
ATTCAGTCAGACAGTTCAAGAAAATCAACTCTGTTAGAACACCAGCTCTGTTCTTTCAGT
ATCGCCACTTCGTAAGTCCAAAACCAAGAAGAAGGAGAAGAGATGGCTGGTCCGGCGAAG
GCGTCGTGGATGGTGGCGATGAGCGTGGGCGCCGTGGAGGCCCTCAAGGACCAGGCCGGC
CTCTGCCGCTGGAACTATGCTCTCAAGTCCATCCACCGGGCAGCCAAGGCCAAGGCCAGC
GTCCGCGGCGGCGTCTCGCAGGGCGCCAAGCAGCTTCCGGCCTATGCTGCGGCGGTAGCG
GAGAGGCGGCGAGCGGAGAAGGGCGAGGAGGGGCTGAGGACCGTCATGTATCTCAGCTGC
TGGGGTCCAAATTAGTAGAAGCTGCTACTTGGTTGGTAGCAGTAATACTAGCTAGGTGTG
TCTGTGTTTGGTACTATGGCGTTAAACCACGATGTAGAAACTTGCTACTTGCTGGCTTGC
CTTGGAATCGCTCATTGTAAAAACCACGACGATGATGATGGCAATTTTTTATTACTTCAG
TTCATATTACTTCCCTTGTCTGTTGCTTTTTTGTTATGTCGATGAGGAATATGTGTTCAT
GCTCTAATTTGATTTCAGCTTACAGCTATTCCGCTATCTCTGAACCTGGCCTTTTGGTCG
TATGGGCGTATGGCATTACAACTTACGACTACTTCGTGTTTGTCGATTAGCTGAGCAATG
AGTTCGTAGCATGTTTGCTGAATTTCTTCAGTCTGCGGCACACATGAAGGTGTCATCTGC
AGGTGTTGAAGTGAGAAACATGGTAGATTCACATATCTGTACTAAAGGTGTCATCAATCA
ATCCATTTTGTTTCAGTTTTGTTCGTTGACCTGCCTCCAGTTGCTTGGTTCCTCCAAATT
TAACAGTTACTAATCCTCACCATCTGCAGGTTTTCTGATCATAGTTAAAGAAAGGTAGGT
CACACGTTTTTCTTTCCATATTTCTAGGGCCATGCAAGCAAAAGCAAAGTCTTTTTGTGT
GTGTGTGTGTGAACCAGCTATGATGGTTTTTTTGCGCTGGTAAAAGAGTTTTATTCCATC
TCGAGGATTACAATCAAGAGGCAAGAGATCCTCGTCACACGGTGGACCTTAGCCAAGTCA
TACAGTAGTAATGCTTTTTGTACGACTATACATGACCAATCAATCTGCTATCATATTCTG
CACACGACTAATTTTCAAGAAAACAAAAACTCTATCTATCATAAGATGACGAATCTCAAC
AACTTAGATGTCCATAGGCAGATCTGGTTAAGCAGTCACGAGACATAGCGAAGAGTGCCA
CAGAAGAATCCGACTGGACTTTGATAGGAAGCTCACAGTGCTGGGTAGCCAGAGCCATAC
CCTGCATAATTGCATGTAACTCCACCTCCACATCATCGTTGAATTAAAAATGCAACGGTA
AGCCGCAAATATAACGCTCTCATCATGCCTCCTCGGAATCATTCTTGCCGTTGCTGAACC
ATCAGACTGTAAGTAAGAGCCATCAACAGACAGGGCCGGGCCAAAAAAACCCGAGGTACA
AAACGCAGGCCCGAGCCCGGCCCGGCCCGACCGTCGGGCCTAGCTTCTGGGCCCAAGCCC
GGCCCGAGCCCGAAAAAGTCCTGCCCAGCCCGACGTAGGCGTAAACTTGGGTTTTCCTAG
GCCCGAGCCCGACCCGTGGGCATGGTCGGGTCGGGTATCCCATGGCCAGGTATACCCGAG
ACCACCTTCCAGGATAGGATCCTCATCTTTAAGGGCAGTTTCGCACCCCAAATGCATCGC
CAGATCGGCCGCTCCCTAGATGGGATGTTGCTTGACGCGCCCCCCTACTGCAGGGACAAC
ACCCAAGGTAGCCAGACGATATGCACTACGCACGATGAAATGTCCGCTCCTTTCCGGAAA
CCAAGCTAGGAAGTCTTGGCCATTCCTCGGTAAGGTACGGATCTTAAGTATCTCATGAAC
GTCCATGTCCCAAAAGTGTTCTCCCAATATTTGCACATTCCAAGCACCGTGTTCATCCAG
AAAATCAGCAACCCAATTGAGTTTGCAGTTACGCTTTGGTGTGACTGGCCGAAGGTTGAC
ACCTCTCGGAATCCAAGCATCTCTCCAAGTTTTAATCAACGTACCATCTCCCACACGCCA
AATGATGCCTTTCTTCACCAATTCATGATCATGGACAATCCCTTTCCATACTGCTGACGA
ACTAGCATAGAACATTGTATCCAACAGATTACCATGGGGTAATATTTAGCTCTGAGGAGT
CTAGCACACAGGCTATCTGGACAGACCAACAAACGCCAAGCTTGCTTAGCCAGCAAAGCC
TCGTTGAAGGTTCTCATATCGCGGAAACACATGCCTCCCATAGATTTGGTAACACCATCT
TCTCCCAACTTAGCCACGCCATATTCCTCTTACCATTCTCCACCCCCCACCAGTATTGCC
ACATCATCCTTGTCAAATCAGCACAAACAGACACTTGCAGCCTGAAGACGCTCATAACAT
AGGTGGGGATGGCTTGCGCAACAGCTTTGATCAAGATTTCTTATTACCCACAGACACATA
CTGTTCACTCCAATCTATCAATCTTTTTCACAATCTCTCCTGAAGCGATTCAAATTTCCA
TTTATGCATTCTTCGTTCAGGTACCGGTAAGCCCAAGTATTTGGGCTCAAAAACTTGCTG
TGATATTTTCAATATGCCTTTCACTTCATCCGCCACCGCCGCATTACAATTCTCACAGAA
CAGGATGGAACACTTTTCTGGGTTAATAAGTTGACCCGTCGCCGAAGTGTAAGTGTTAAA
CAAAACTTTGACAATGCTAGCTTGCTGGCCGAAGCCTCAAAGAGCAACATTGTATCATCC
GTAAAAAGCAAGTGAGATATAACCGGTGCACCCTGGCAAATGCTAACACCCCTCAAGTCG
CCGTCAATGACTGATTTGGAAATAAAAGCAGACAGGGCATCAGCAACAAATAGGAATAAA
AACGGTGACAATGGATCACCATGTCAAAGCCCCGTGACGGGGAGAACACCTCGAGTAACT
TCCCGTTGAACTTCACTGAACATGTGACAGATTTCACACACGCCATAATCCACGTGATCC
AGTCCGTCGAGAAACCCCACTTGACTAGGTGAGCAAACTGACTCTGGAAATTCTGAAAGG
ACCCGTTATCCTGGAAAACCAACGTCCGTTGTCGCCTGTTTTCCTCTGTCACTCCCATGT
AGTATAACCCCGTCCCACTTCCATCCTTCCTCCCGTCAACACAAACAAGCATCGATCGGC
TTGCAGCTCAGTACCTTTACCACAACAAATCCACACTTGACTGCTAGTAATCTTCAAGCA
TCGCAGAGTTCAGGCAGACCAGTCAGCGGTATCGTCTCCTCCAACGCCCGCGAGAAGAAC
AGAGGTACAGAGAGGGATCATGGCGAGTGCGGCCAAGGCGTCGTGGATGGTGGCGATGAG
CCTGGGCGCCGTGGAGGCGCTCAAGGACCAGGCCGACCTCTGTCGCTGGAACTATGCGCT
CAGGTCCATCCACCAGGCCGCCAAGGCCAAGGCCAACGTCCGCGGCGGCGTCTCGGAGGG
CGCCAAGCAGCTTCCGGCCTCTCCTGCGGCGGTGGCGGAGAAGGCCGAGGAAGGGCTGAG
GACGGTCATGTATCTCAGCTGCTGGGGTCCCAATTAGTACTAGTTACCAAGAGGTGTTTT
AGCCTCTGGTACAAACCTCTAGCAACAACGACGCCGTGTGACTTGGCTGGTTGATTCTCT
GCCGATTGTAAATACGTATCACGATGATGACGACGAAACCTTGCCCCGCTTCGAGTTCAC
ATTATCGTCCTTCAGAAAAAAAAAAGGTTTGCATTGCCTTTCAAACAAATCTGTTTGCTT
CAGATTCTTTGGCAAGATTATTGCTCAAGTTGGTCACAAGCTTTGCATGTTGCTCTCTTC
TGTTCAATGGGCAGAGCAAGATCAGGACACACAAAATTGATCTTGTCCATGAGTTTTCCG
CCAGCTTGAACAGATGATAATCAATACTTATTTTTGTCGAATTAGTTTCGTAGGTTCAGT
TTTATAACCATATGAATATGATAATCAATACTTTTTTTGGCGAATTAGTTTTGTATGTTC
AGTTTATAAACATATGAATATGCATGTCTACTATTCGTGTAACCTCACATGCGCCGTCTT
TGTTGTGTTGGTTCATCAAACATACACAAAAACGAAGCATGTGGCGCTGAAATTGGAAAC
CATATCCTGCTCCTCTGGTATCCCCCTGCCAGCTCTCATACTCGTACATGGTATCACCTG
TCCCCTGTCCATAATTCCCCGTGCATTGCTGTCGGAGTACTTACTTATGTGAAACGTAAA
TATTATAATTAACAGTATAAACATGAAAATACATACATATGAGATCTATTATACTTATTA
GTTTATTGTTGCAAAATAGTTTTGAAACATAAGTAGCATATAATGTGGGTTTAAAATTCC
TTGGAGTTCACCACGTGCGTGTTTCTTCATTGAGAAAAAAATAGACATGAGTAGTCAAGA
TGACTCTCTCCCCATGCGTTGTTGCAGTAACTTAGTTAATAAATGCGCAAGTACTTACTA
AATCTAATGGAAAGAAAATATAATTTTGAAAAATAATAAAATAAAGTGTCTAAATAAAAT
AAAAACCTTTGAATTACAACTAAAATGTCATTTCAAACAAAAATGTGAAGGATGACTAAC
ATGAATATATGATGTGGCAGCGTTATATGCATATACTAATACAATAATAATAATAATTTG
TAAGTTAAATGCATGACTGGCCTATGTGACATATTTGCATGGTTTAGTGGAAATCAAGAC
TTAAATGCATTACTTACTAGGACATTAAGGTGGACCCTTTCCATATCAAGAGAATCGGAC
CAACTTTTGAGGATGTAAGATTTGGCTACTCCACTCAAAAGGTGAATGCGTGCATAAAAA
ATGGTACAATTAACAATTCTTGGCTTTACATGTTGGCTACATTTTTATTTTTTGAATTTG
CAAGGCCGTGCATTTTGGTACAATTTGGCTACATTTTTTTTAAATTTGCAAGGCCGTGCA
TTTTATTTTTTGAATATTTTAAGAAATATATATTTGCTCCATTAGTTGTCAAAGTATAAA
ACTACAATGCGTGAAATTTCTGATCTCCCAAGTGTCAAACATCTAGTTCTGCATCTTGAC
ACATTTATAGTATGAAACTATCGATTTTAACCAGTTAAATTTTTTCTCAAAGCTCTCTTA
TTCAATTGTTTTATAATATAAACAACATTTCTTAATTTTTAACGCTACACAATTAATTGA
CATCTTCAGTTTAGAGTTGGAACACCATATTTTGATAGGGTCAAAAAATTCTCATGGAGC
TCTCTCATTCAATTCTTCTAGTTCATGATGTTCGAGATTTTTATTTTCCATTCAATTGTG
GTATTTTATTTTTGGATTTTCTCTTCAGCATGGAGGCAAGACAAACTCATGATAAGGAGG
ATGGATCTGCATTAGGCGCACCTCCCACACCTTATCAACCCTACCATGGGGAGAACACTT
GAAAAGGGTCTCAAAACAGGTTAACCGGTGATCCAAGCCCCCCTCCCCCTGGTATTGACA
ATCGCAATTAGAGATGGGGGGAGCCAGATCGGGAGGGGGAGAGGGGAGGGAGGTCTCAAG
AGGATAGAAAAGACAAGAGGGCAGTCACCACGAAGGTAAAGTTGTTCTTTCTGAAAAATG
TGCTTCTTGATCAGACTAAGAGGGATGAGAATGAGGCGCAATACAATATTTTTTCCCCAA
TTTTCAATGAAGGACCAACTAGGTTATTGCCTTAAGGTTGTGGCATGAAAATAAAGGGAA
AAAAGACAAGAAGTACTTCTCAGTATACACGAGTTCCTTCAGAATAATTAACTTTTTTGA
GACATCAGAATAATTAACTACCCCCTCAGAAAGAAATGTAAAAATATTTAGATATGTGCT
CTTATATTTCTTTATAGAGAGTCGGCAATATCACAATGAATACTATGCCAAAAAAATAAG
TGTTCTCCGCAAACATCTTCTAAGATATTTGCTAAACACATATATAAGCATATTTAATAG
TACTAAAAAAACATATATAAAGGTATTTTATACTACTAAACCAAATACATAACAATATTG
TACACTTAAGTGACACTCAAATTAATTTGTATATGGATGCTATTTTTCATTTTCTCATAT
CTAGATGAAATTTTGCTGAAATGCTTTGAACAAATTTGATAACATATGCTTTATAATAAA
ATGAAACCAGTATACCAACAAAATAAATTGGATGGTACAATCGTTAAAATTTAAGTTACT
ACTTGTTGTTTATGTTATTAGGTAATATATTAGAAATTCTCTTGCTAAATATTATATTAG
TATGCTAAATATATTATGAATATGATATGTGAATAAATAAAAATATTTAGTATAAATAGA
TAGCAATTTGTTTGGTTGGTCTTTTTAGTTTTCTAAGAAAACATAATGGTTAGCATGTTA
ATAAAAAATGTAATATATAATGTGGCATATTAGATATAATTCGGTAAAAAATGAAAAATG
AGTTTATGTCATTTTTTATAATCATATATCATATACTTGTTGCTTATAAGTATATTTATA
TGAGCGGTGATGAATTGGAACACGCTTCCTCTATCTCCGGATCTGTTGCCGCCACCACTT
TAACCTGTTTTGGCTAGTATAACTTAAGGGGGCTGCTACCAATCCACCGGTGGATATTTA
CTAAAAATCCATCACCTCCACAGCCGTTCGATCTCGTCCATAGCCGTCCGATCCGCTCCT
GATTTAATTCCTGAAACGACGTTCGAGTTCCAGAAACAATCGCTTTGTTGCAAAAA