morexGenes - Barley RNA-seq Database

Contig contig_72176

Source Contig contig_72176

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_72176 (3794 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_72176

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_76643	2	2474 bp	MLOC_76643.1	Available	Available	None
MLOC_76644	6	3775 bp	AK248174.1	Not available	Available	None

CDS Structure of MLOC_76643

CDS Structure of MLOC_76644

Contig Sequence (3794 bp)

>contig_72176 3794 assembly3_WGSMorex_rbca.fasta
CGCCCATTCCTGTCTATCTCAGGATAAAGACTACATGTTGATAACGTGTTAGAATGAATC
CTCTTCCTTCTTCATTAGATGAATATGGATATATATACAAGAAGAGATGCAATGAAGAGG
CACCTATTTAGGAGAGATGGCAGTTACAAGGGGAGATTACCCCATAATTAACACATGTTA
ATTAAACTCTAACAAAAACATCTTGTGCAACTACATCAAGCAATCAAGTAAGTTCTCGGA
GGTCAAGAAAGTTCTAACTACAATTAAAGTTGCCTAGATTTTTTATTGACCCCGTCATAG
CAAGGATTGCATTTCAAAGCTTGAATCATATGCTTACCGCAGCATGCTACAAGTCAGTGC
TTGTTATAGGACATTAAGGACAGTAACTCTGTAACATCTACACACTTCATTCCCTGTCCA
CTCAAATTAAAATATTTAGAGATCATGCAAGTTCTAGTGGAAACGATGCAGTTCCCTCCA
CATTTTCTCATCCGGGCTTGGGACCGGCAAAGGCAGTGTTAAACTACGAAACTACTAAAC
GCATAAACCAGCAAACACTACAACCAATTATTCAGCTAAGCATACAAGCCACACCGTCAA
CCAAAGGCAGCATTGTCCCGACAAACGAATTGACCAAGGCAATAAATATTCACAACATTT
GCACAAGATCGTAAGACAGAAACATAGGGGCACAAACAAGGAAAGCTATAAATTCTAGAA
CCTACTAATTTCTCTAATGTGGCAAGGTGATTCAAATCTTTAATCTTGAATATCTTCATC
AGTAGGCACAGAGAAAGCTTTCACACTTTTAGCCCGTAATAGAGTCCTTCAGCCATAAGA
TGTGTCAACAGATACTTGTGTGTCTTAAAAATCTAGTATATTATAAGCTTGATTTAAGAG
TGTGCAATTGGCAGGAATCATCAAATTAGTATTTTTGCTAGTTAACTAAATTAAAACTAG
GAAGCTCCGGGAAAACCAATAATATGTAATTGAAGATTCCATAATCCAGATCAAATTAAC
CATTAGAGGACCGTAAGATGTGTGGAGGCTTTGTGTCTTCAAATCCATGACGAATGCAGA
ACGAAACAAACTGACATATGTACAAGCTACTTGAAAGTATACAATCAGCAGTAAAACCAT
CAAACTTAGCCCAACTATTTTACAAGTTGTCAAATTAAAATAGGAAGCTCCCAGCAAAAC
GAGAAGATGCATTGAAGATTCGTAGTCCAGATCCCACTGGAGAACGACCAATGGTAAGAA
CATCACTTCTGAAAATCAATTCCATACCAATAAGTCGGGATCATCGGAGTCATATTCAGT
GGAAATGACACTAATCAAAGACATGACGAGTAGTAGTGTCCATGGCAAACTGTTTGTTCA
AGCTTCGAGTCGAGAAGCTTCAACTCTCCATATTTTTTGTATATATAGCAATAATCCCTA
ACCTCTTTCTGCGTATCAAGCCATCAACATTACCCAACTATAGAAGTCAGGAGAGGATCA
GAAACCAAAAATACGACATATTTTGATGGCTACCAGCATAGCTTGGGCTAAACAATCTGC
AACCACAAGAAGGCGGAAGCAAAAAAACACAATCAATGCTACAAGCACAAAGCATCTAAG
ACAACAGAAGCTTCTTCAAGAGATCAAATAGAGAGCACTGGGTTTTTTCGGTTGTAGGAT
GGCCCGTCTAGATTGATGCCCTGTAGCAACCTTCGAACCTTCTACATCCACCAATCCAAT
CTGAATGTTCAAATTTTGTCTCCATGAGATAAATTATATGTTCAAAAATTACGACGAATT
GGAAAGGTGCAGGGTTTAGAATATCTTCTAACATACTCATCATCAGGTTGGACCTAAATC
GTCAGTTAGGACCTGCAATGACCAAGAAACCTCCGTTTGAACTTCTGCTTTGGGGAAACG
AAGCTGCCTATGAACAGCTAAATGATGCATCAAACAGTGAGGGGATAGGATAAGCCTACT
TGGCTGGGAGATATCAGTTAGGGAAACACCAGTTCCAGATAGCAAACTATATTATCTCTC
ATCCATGTAAATATCTGCTATCAGTTAGGGAAACACCAGTTCCAGATAGCAAACTATATT
ATCTCTCATCGATGTAAATATCTGGAAGGACATGTAGTTACCAAGGCCAGAGAAAACAAT
GTCTAGGAAGTGCAATGTTCAAAGCAAATCAGGAAAGATGAAGTCAAGAGAAGAAACCCC
ATGTAAACCAACAGTCAAAGCAAGGCACCTTCCAGAAAGCCCCATAAGTCCAATAGCTGG
AGAACCAACAGTTCCATATGAGAGATGTTGTAAGCTAAATTCGACTGTGCAAACAAAGAA
ACTAAATTGAGGATCAATTATCCAAACTCAGTTCGCAAATTCTCTGATCTCCATTCCATG
GTTAATGATCCAATCCGACTTCAATCCAAAACAAAAACTTCAGCACACAAGATGCTATCT
TATATCATGCAAGGCATTGAGCCATAACCAATCCAAATAACCATGAACAGTAAAACAAAC
CTCCACCCTCTGATTCATCACTCAGCAACCATCACACTCCGGCATCTGAAGGAGAACAAA
CACATACCCCACAAGCAGAGATCAGCTGTAACAACGAGAACCAACGAGAATGCACCTTGT
ACCGAGGGATAATGGTACTCATGTTGTAGGATATGCCACTAGTTTGAAGCTTCATTCTTG
CACCTTCTGCAGCTAAATCTGAATTTAAAATATTGCCTGGTAAGAGATCTTATTAACATT
ATCTCAGTTAAGGAATTGAGTAGATAGTGGTTTTAGAAGAACTGCAAACTCAGCATCAGG
TTTGTGGCCTTGAGTTCGTAAACTACAACCTGCAACGAGCAAGATAACCTTTCTATAAAT
GTTTCAGCTAGGGGAAAACTGGATGAAACAATGAGGAGGTAGAGGATAAATAAGCCTGTC
TCGACTGGGAAGGTCAGGTAGACAACACAGGTTCCACTTATATATCCTTTGCAAGACACT
ATCTGCAAGAGCTGAGAATAACTAAGACAGGGAAAACTAATGTCTGCTGAGTCTAATTAA
TATTGAAATAAGAAAGGTCCAGAAAGTTCAAGAGTCTATTTCGGTTGTAGGATGTGCCAG
GATTGTCATTAGATTCGTGCACCGTTGCATATGGATCTGTATTATAAAATATTACCTAGT
AAGATAATATGTAGGTCATGAAAGTTATGATGAATTGAGACAATACTCATAGATTTAGAA
GATCTGCAAGCAAATTCATCATCAGGTTGGACTTGAGTTCATCAACTACAACCTGCAACG
AGCAAGAGGCCTTTCTATAAATTTTCAGTTAGGGGAAAATGCTACTTTTATATATAAATA
GCTAAAGCATGGATCAAAGATGGATGGGGAACAAGTAAGCCTGTCTCAGCTAGGAAGTTC
AGATATGGTTGACGGAGGACAACAACACCGGTTCCAAACTGCTGTTATATCATTTTAAAG
TCAGTATCTACAAGAGCTGAGAATTACCGACTAAGGCGGAGAAGACATGTAGCTCAATGA
AATAAAAATAAGAGGATAAGAGATTAAGTTTTTTCCGGTTGTAGGATGTGACACTAGTTT
TGAAGCTTCATTATTGCACCTTTACAGTTAAATCTGAATTTAAGATATTACCTAGTAAGA
TATCTTATTATTATTATCTAAGTCGAGGAATTGAGAAGATAGTAGATTTAGAAGAACTGC
AAACTCAATATCAGGTTGGTGGACTTGAGTTCGTAAACTACGACCTGCAACGAGTAAGAT
ACGTTTCTATAAAT