Contig Data
morexGenes
Links



Map Locations of contig_71832 (5334 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_71832

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_76554 3 750 bp MLOC_76554.3 Available Available LOC_Os04g28040.1, FRAME:+1, EVALUE:7e-17, 13104.m02652 protein expressed protein





CDS Structure of MLOC_76554






Contig Sequence (5334 bp)

>contig_71832 5334 assembly3_WGSMorex_rbca.fasta
AAATGTAGGGAAAGGCTGCGTACAATAGACCCAAAGTGGTCGGACCCTTCCCCGGACCCT
GCGCAAGCGGGAGNTACATGCACCGGGCTGCCCTTTTTCTGTTACTTAACTCAGCTGACA
AAAACCGTGCTAGCCAAGATTTTGACCATCTGTACTTATTGCAATGTTCCTTTGAAACAC
TTTAGGTGCATTATTCTCGGCTTACTCGTTCTAGGGCGCAGTCATTATCTATTTCCACAC
CCGAGTCTCTCAAAATGAGAAGAACCAAATCAGGTACGATGTCTTCGGTTGGACTCTGCT
ACTTAAATAATTTACTATTTGTCCTTGGATAAAGGGAATTCTTTCTTTTTCAGGTCGAGT
GATAGTACCTCAATTGGATCCAGGAAGAAGTTGGGTTGTCTATGACAGGGTTAGTAAAGA
AATATATTTCAATGTTATATCTTATATGATTGTGTGTTTGTGCGCATGATTAGCTAATTT
GTTAATCCTTAAATTATCCTAGTTTAATCTTGTTCATTGCACCAAAGTCCAAAATTAAAC
AGTGAATGATGCAAGAAGAGTTTCCTAGCAAAGGCTTCCATATAACAGAGGTGTCAGTCT
ATAAGCTCTACGGTGGAACCGTTCCACGATATATAATCATATTGCTAGGACTAGGAAGAG
ACTGATCAAATGTACTAGGGTAAAGCATGCATAATCTGAATATTCACCATCCCTTCCTAG
TGTTCCGCACTGCAAATTATTGTTGTCACAAATGTGAAACGTCAAGTTTGATCTGGATAA
AGCAGTGCATAACTTATCGCGTAGATGTGCTGTGAAGATGCTTATCTTATGATGTAATTT
TCAATCATTAGTAGGATATGGATGCATAACTTGTCTTTTTTTTTTCCTTAGATGATTAGA
TCTATCTGCTGATGGCATGAGGGGATTAACACTGCCCTCTAATTGAATTCCGTTTGTTGT
GCAGGAAGGGTTCATTTCAGGCGTGCAGAATGGTTTGTTGAGAAGCTCCCGTGCCAAATT
TGCTTGCCGTATATAGCTTTCCCTCCTTGTAAGCATAATCACGTGTGTCTTTTGGTGACA
GGGGGCTAACTGGCAAGTTAACGAGACTTGAATGCAAGTCCAGAAGGTAACGACTTAAGT
TTCGACATGGAAGTTCCAATGCCCCAGCACCAAGCGGTGGGCGACAGTATAAGATCCACT
TGTTTCTACCGCTGGATATTTGCTGATTAGGACCTTGTAATGTCAGATATGGGCAGCTTT
TATTTTTGTGCAATCGATTTGAAGTCATCAAGATTATTTTTGTGCAATCGATTTGAAGTC
ATCAAGATTATTTTTGTGCAATCGATATGGGACCTGGATATCAACTAACTTACTCACCCT
TAGATGCAATCGATTTGAAGTCATCAAGATTATTATGTGCTCGAAATCTCAGAATGTGAC
GGCCCATCTTGGATTGGGTAAATGATTTGAGATACACAGCATTTGAATTTTTACACCGCT
GGTATCCAGGGCGAAAATGGTATGGATACCTCCTGACCAACGATACCACCAATAGCCTTT
TGATAACCTTGGTTGGAGAACTAAATAATTCACAAACAGGTTAAGGAGGCATATAAGGTT
TTAAAGCTATCCCAAGGTGATTGTGAAAAAAACCCCTATCTGATGGTATCTGAAATACTT
GGAAATAGATAGGACAATACCTATTGTATTATATATGTATTAAAAATATGGATTTACTAA
TTCCCATGTAGATGAGATATGGTCAATTCTCATATAATCCGATCAGACTGTTGTTCTTTA
GCGCTTGCATATCTCATCGGTGAGGCGCAAGGAAACTCTCGGCAATGACGGCGGCATCCA
ATGTGGGCATTGGTCAGTGACAGAAGGGCACTCTCTCATCGTGCTCGGTGAGGGCGCAGA
TGGAAGAGGCGCTCGAAAAACTCGACATATCCAAGGAGGCAACGCCTCTGGTGATCGACG
ACATGGATTATGGTGCACCGACGAAGTGGCGGGCAAGGTCTTGTACCAAAATCTTTTTCA
TATCCATACAATCTCGAGTGCCCTCCGTCCAGCTTGGGGTAACCTAGGGGCTTGGTTATT
CGTTCATTGGGAGTCTAGCTTGGGGTAAACTAGGGGCTTGGTTATTCATCCATTGGGAGC
GAATATGTCTGCTGCTAAGTTTGAATCCAAACGTGATCGTGACTGTGTGTGGGAGGGAAC
ACCCTGGCATATTAAGAAACATGCAATAATCCTTGAGAATTTTGAAGCACATATGCGGTC
GTCGAAACTCAAATTCGACAAGCTGTCGGTTTGGGCAAGGGTCGTTAACTTGCCTTACAA
CCTAAAGAACGGCACATTGGGCCTCGCTATTGCGAAGCACACTTCTGTCATTCAAAAAGA
TCCTAAGGGGGGGGGGGTAGGGGTCCTACAGGCGCGAGTCACTATTGACGCGCAAGCCCT
TGCGCAGATGGATCGTAATTGAACCAACGAAGAGAAACAAGACTAATTGCAATGACATCG
AGTATGAGCACATACCTCACTTTTGTTTCTCATGTGGCCGTCTTGGACACTCAGACTTGT
TTTGGTCCATGTCGGGGACCCGTGATGAGAAGGTTGATTTACCTTTTAAATCTAGTCTTA
GGGCGTCAGAGGATATCAAGAGAGAAAATTCTGGTGATAACTTGTTGAAGGAGAGATATG
AGCCGCAACACAACACCATAGAATCACGCTCTTTGAGTTCCAAGTAGAAATCTGGGACTG
AAGTAAACTCCATTCTAAAAGTAAATTCAGAGAACAAATAGAAGGGAGGAACTGAGGATA
CACAAATTTATCGTAGGGTGGTTCCTCAACCGCCGACGGTCACAACCTATGGGGAAGTGA
ACACTGAGCTTCATGCGGGAGGGGGGGGGAGCCGACTACAATCACAAAGAAAGAAACTAG
AAATCTTGGAGACACCTTCGTTGACAAGGAACCAAAGAAGAAGAGGCCAAACCCACCGTC
ATTTGAATCTTTGACAGCGGCTGCGAGTCAGCTACCCGAACCAATGAATATAATGAGTTG
GACCGCCAAGGGCTTGGGAACCCTTTGACAATTAGGGAGCTTCGTCAATTAGTGAAGCAA
AATAAGGGCCCACCCTGTTATTTGGCATGGAGACGAAGACCAGGGGTCGATGAGTGGAGA
ACATGAAAGCTTCTTTTGTTTTTTTCTGGTTGTATTGCTCTCGATAGGGATTGGCTTAGT
GAAGGCATTGTACCGTTTTGGATAAAAGATGTTACTGTCACTTTACAGAACTACGGTTCT
TCTCATAGTCATATAACCGTGCGTGAGAAAAGATAGTAAAACTTGGCGCTTCACGGGTTT
ATACAGAGAGCCACGGGTGGAAAATAGACACCATAGTTGGCGTTTTATGAGGACCGCATT
TGTTGTTTAGCATGAGTCATGGTTACACATGAGAGATTTTAATGAAACTTTGCATGCATA
AGAGCACTTTGGGGTCAATGCAAGAACGGAACGGCAAATGTGCGCGTTCTGGGATACAGT
GGTAGATTGCACACTCCAAGATTTTGGATAGCGTGGTGTCCATTTACATGGGATAATAGG
CAGCAAGGAGACATGTATATCAAAGCAAGATTGGATCGGTCTCTAGTAAATCAAAATTTC
CTTGATCTATTCGAATTCTCAAGCATTAAACACATCAATAGTGTTGGATATGATCATTCT
TTTGTGCTTGGAGAATTAAGGACCACAATGGTGACCGGCCGGGCATGTCCACAATACTCA
TTCTACTATGAAAATGTGTGCCAAACTCATGTCGATTACGATGAGACGGTGTGGAAAGTG
TGGCATGCAGGAGACAACCATGAAGGTCTGAAGGGTGTTGTCGATGCCCTAGATGAAGTG
TAGAGTAATATAGGTACATGGAGCCAGAGAGAATTTGGAAACTTGGCAAAAAAGTGTCCG
CAAAATACAACAACGGATTAATCGGCTAAGACGTTCCTTGTTGGGCCGTGGGCTAACGAA
GGAAGAAAAACAAGTTGCATCATAGCTTCGCGAGGCTTTGAGAGAGGAAGAAATGTGGAT
TAAACGACACTCTCTTGTGATGTGGTTGAAGGAGGGTGACCATAACACTGGATACTTCGA
GGCCGAGGCAAAAGAATAAACAAGGTTGATATAGTGGAGAATTCTGATGATTGAATGAGT
GCAAGTTAAACAGGAGATTGCTTGTTTTTATCAAGAGTTATACCATTCCCAAGGGTATAT
GCCGATGCATGAGTTGCTATATGTCGTACATCCTCGTGTTTCTGAAGCCATGAATGAAAG
CTTAGAGAAAGAGTATGCAGGGGAAGAAGTTAAGCGTTCATTATTTGAGATGGCACCGAC
AAAACCCCGGGTGTTGAAGGATTCACGACATGTTTCTACCAATGACACTAGGATGTCATC
GGAAGATGTTGCTTTGGTGGTGCCTGGCTTTTTCAATGTTTGTGAGTTACCTTTGGTACT
GAATGACACAACAATTACTTTGGCCCCAAGGTAATAAACCCACAAAAATTTCCCAATACA
TGCCTATTGCTCTATGTCTGGTTTTGCATAAATTTGCAGTGAAAACTGTAGAAAAATAAG
ATCATTTGATTCTTGATGAGGTCATCAAAGAGTAAAAAAGTGCCTTTGTACCAGGTCGTC
TGATCAGAGATATCGTACATGTGGCATAGAGAGCATCCATGCTATCCGAAGGAGAAAGAA
AGGCAAGAACGCTTGTTGTGCCGTAAAACTTGATATGCTCAAAGCCTATATAGGATGGAA
TGGCACTATTTGGAGGCCATGTTATCAAAACTTGCTTTGGTGGTCGCTTTATCAGATTGA
TTATGAAGTGTGTGACCGCAGTACGGTTCACCAACACGGTCAATGGGGAACTCCTCCCAT
ATTTTAGTCCTACCAGTGGGTTGCAGCAGGGGTGCATGATTTCACCATATCTCTTCCTCA
TTTGTGCTCAAGGCCTCACATCGTTGTTGAATAACTACGGACGGGAATATATTGACAGAG
GTATCCGGGTGAGTATCCATGCACCATGGGTGAATCACTTATTTTTCGCTGATGATAGTC
TCATCTTTCTCACCTAGAGTGGAGAAAGATCCAACGGCATTCTTCGGATCTATGCTAACT
GCTCCGGGCAGGCAGTAAACCAGGAGAAGAGTTCAGTATTTTTCAGTGCTAACACATGTC
AAGCCCTTTGAGAGGTACTGAAAACTACTCTCGGGATATTTGTAAAGGCGTTCTCTGAGT
GCTACTTAGGCCCGCCTAGTGTCATTGGAAGAATTGTTGGAATTATGCCCTAGA