Map Locations of contig_71777 (3558 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_71777

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_76541 1 1013 bp MLOC_76541.1 Available Available LOC_Os10g20470.1, FRAME:-3, EVALUE:4e-111, 13110.m01676 protein MATE efflux family protein, putative, expressed





CDS Structure of MLOC_76541






Contig Sequence (3558 bp)

>contig_71777 3558 assembly3_WGSMorex_rbca.fasta
GGACACGATTATGATGAGACATTCGCTCCTGTGGCCCACATGACCACTGTCCGCACTCTC
CTTGATGTGGCTTCTGTTCGTCATTGGTCCGTGTCTCAACTTGATGTCCAGAACGCTTTT
GTCAATGGTGAGTTCCGTGAGGAGGTTTATATGCAGCCACCACCGGGGTACCATGCTCCT
GATGATATGGTCTGCCAACTTCGACGCTCCCTCTATGGTCTAAAACAGGCCCCTCGCGCG
TGGTTTGAGCGTTTCGCTTTTTTGGTTATTGTCGCTGGCTTCTCTCCCAGTGAACATGAC
CCGCGTTGTTTGTTCACACGTCTACTCGTGGTCGGACTCTTCTCCTTCTATATGTTGATG
ACATGATCATCACTAGTGATGACTCCGACTACATTGCCTTTGTTAAGGCCCACCTTCGCG
ACCAGTTCCTCATCTCTAATCTTGGTCCCCTTTGCTATTTTCTTGGGATTGAGATTTCTT
CGACCCCTGATGGTTTCTTCATCTCCGAGGAAAAATATATTCATGATCTTCTGGCTCGCT
CCACTCTCGATGAAGAGCGCACTGTTGTGACTCCTATGGAGCTCAACGTTCAGCTTCGTG
CTTCTGACGGTGATCCTCTTTCTAATCCCTCTCGCTATCGCCACCTCGTTGGGAGCCTTG
TCTATCTTGTTGTTACCCGTCCTGACATCTCCTATCATGTCCACATTCTTAGTAGTTTGT
TGCAGCCCCACATCTATCCACTATAGTCATCTCCTCCGTGTTCTACGATATCTTCGTGGC
ACGATTTCTCAACAACTTTCTTTTCCTACTCCAGCTCACTCGAGCTCCAGGCCTACTCTG
ATGCTACGTGGGCTAGTGATCTCTGTGATCGCCGCTCGCTATCTGCTTACTGTGTCTTTC
TTGGTGGCTCTCTTATTGCCTGGAAGACCAACAAACAAACTGCAGTTTCTCGCTCGAGTA
CCGAGGCTGAGTTGCGTGCNNNNNNTATGCTGACGGCTGAGGTGATCTGGTTACGATGGT
TACTTGAGGATTTTGGCGTGCTGGCTAATACATCGACTCCCTTACTGTGAGACAGCATAG
GTGGTGCTGCTGTGCAGGATCAGTCGCTCGCTCTTCACTATGTGCCCTGTGAGTTACAAT
TGGCAGACTTCTTCATGAAGGCACAGAGTCGAGTGCAGCATGAGTTCTTTCTCTCCAAAC
TCAGTGTTGTTGACCCAGCATGAGTTTGAGGGGGGGAGGAGGGTGGTGTTAGATATGTAT
AGTCCCTTTTCTGTATATCCTCATTGTATAANNNNNTTCTTGCACTTCTACCACATGTAT
ATGTATTGGCCTTTTGGCCCCTGTGAATGACAGTTGTTATAAGACATAACATCGTAGCTT
CTCCAATAATAAAAAATAGTAAAAAGTGTAGCTTCATGTTGGTTCACCAACACAACTTAT
GCATCGAAGAAAGATGAAAAGAATCACTAGCACATTAAATCCATGCAAAGATTTGTCAGA
AAATGAAAATTCTTACATTTACCGTATTCACCGAAGGACCATCAGTTTCGGAAAGCCTCA
ACTTTCAACAACACAGTAAAAAAGTATGTGAAGTACTGAATGTTTTGTTCAGAAATTTAA
CTGTAGTTATGTTTCCCTGTAAATGTTAGTCTGTTACAGTGATGTAACACATAATCGCTT
GTTCCATAATAATTGAGTTGTACCAAAGATTGACTAAATTTATATTAAAAAAATATAAAC
ATCTACAATATTAAAGTTATAATTAATTTATTATTTATCTGATGACATTGATTTTATATT
GTGATTGTTGATATTTTTTCCTATGAAGTTGGTCAAACTTTATGAAGTTTGATTTCAGAC
AAATTTTATATGTAGACTAAAAAGAAATGGAGGGGGTAGCTTGCAACTGATCAAGTGCTT
CAAATTAATCACATTCAGTTTCAGTTGCTAGGTGTTCCAGACGCCCCCAAGCTGCTTAGT
CGATATGCATCACAACATGCCACACAAGTAACATGACTGGATCAAATTGGTGGAGATTAC
AATGGTTTCCCGCGCATTGCTTACCCACAAACTGTCTCCTGGACCAAGAGCTCAGTTACA
CACCACAAGAATGAATCAGACAAAACATACAATGGCCAAAATTGCTGGGTCATGCCTGCC
TGCTGATCTCATGTTCATGGCAGCTCTGTTTTACATCCGAGCACCACATGTCCTCCTTGC
TAAATGCCTCATCAACGCTCAAGTGATATAGTGTATCGGACCAATCAGATACCATACCGA
TCAAGCCGTCTGCAGCATGTGCACGTGATGCTTCACATTTCTACGATACCGGGAGTAGGT
GGGATGAACTCAAGACCCTGTCCTGTGCCTTTAGTGCCTGAATTGGATCAACAAGAAAAC
ACATTACATTGTCCTGCCTTCAGAGTAAACTGTAATATAGTTATGCAAGAGTTTGGTACG
CCTGCTATATTTACCTCCTTTTGCCAATCTATGCACCAGGTGATAAACATAAGCAGCACC
AGTTTGGTGAAGCTGCCGGAAACGATGCCAAGCCAGAGACCCTAGTTGAAGTATACCAGT
TTCAGATTTCATGAAACCCATCCAACGTGCTGGTAAAATTAATACTTGAGCAGGAGAAGT
TCTTACCATTCCGTTTAGGTGGAAGACAAATGCAAGCATCACAGCCATCGGGATGCCTAA
CAGGTAGAACGCACCGAGATTCACGGCTGCGCCAATATTCTGCTTGCCGCTGCCGGTAAG
CACACCTTTATTGAAGCAAATGTGATATAATTAGCGCTTACTCTTATGTTTCTCAGAGAG
GGTTTTACTCATTATATTCAGAACTGTATAGAGCAATGAAAACTACCCGAAAGAGAACTG
TGAAGCCCATCTATGAAGAAAGATATTCCGAGAACTGGCAGCATCCTGGACATGTATGTG
ACGATTTCCTGCTCATTGCTGTACAGGTACCCCCAAACATTCCGTAGCAAGATCATGGTC
AAGGCTAACACAAATCCTACAGACAAGGCCATGTACATGACCACTCGCATCGCGAGCTTT
GCTGCTTCCGGGTGGCCTGCCCCAAGTTCGTTTGAGACGCGCGTGCTACCGACGAGAAAT
TAAGATTGCAAGAATCAGCTGAGTAAATTAACAAGATTCAGAATTAATTGTCTTTCTTCT
GTTGAGGAATGAATGACAGACTGACCTGATAGAAGAAGAAAGGCCAAGTGGTACCATGTA
CAACAGAGCACCTGTGTTAAGGCTGCAAAAAGTGGGCAACTAAGTACAGAGAACAAGCTA
TATAGGGGTGCTTAATTTGTGAAGCTGAAACCACACATGACATGAACATGATCGTAACAC
ATTAGCTTACCATATTGACAACACTGATGTCTCAAGCTGAGGATTGGGCAGAAGCCCAGA
GAGAAGCACAAGGACCTCAAATGACCACCACTCCAAGCTGCACACGAGCAGTAATTACAT
ATGGAAAATAATTAGACAAGAAACGGAAAAAAAGTTCTCTTTTGTTTGGACAGACCAGAT
CATCATGGCGGACGGCAT