Map Locations of contig_71594 (9856 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_71594

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_76498 6 2357 bp AK369521 Available Available None
MLOC_76496 1 546 bp None Available Available None
MLOC_76497 3 907 bp MLOC_76497.3 Available Available LOC_Os01g05100.1, FRAME:+3, EVALUE:7e-69, 13101.m00484 protein expressed protein





CDS Structure of MLOC_76498






CDS Structure of MLOC_76496






CDS Structure of MLOC_76497






Contig Sequence (9856 bp)

>contig_71594 9856 assembly3_WGSMorex_rbca.fasta
ATTACATTTCTAATACAAATAGTTATGATCCACTGTGCAAATTTTGGCATAAGAAAACAA
AAATATAGGCCATAAAATCAGAAAAATTGCATTTTATGTATAGTTTTCCTATGTTTTTAC
ATTCGTAATTTTACGTAGCAAAAATATTTTTTACGGTGATTATAAATTTTTCTTACGATC
TTTTTTGATGTATAAAATAAGATAAAATTTACGGAATGTAAAACTACGGTGCATTGATGA
TAAAATAGAGAGGGGTGAAGAATAACTATTCCTCNNNNNNNNNNNNNAATAGCGCGACCC
TATATATATATGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTTGCAATTGATATATA
GTGGATTGTATGCATCAATAGGGATATTGATCGGTTCAGCTCAAATAATATATATTTATG
ATAATATCTCATCACTAATTGCATGATCTCCAAATAAATGAGTTACCATATATTCCTCGA
TCATGCACGTATGTTCAACATACTCCTATATATTGAAACGAGAGAAGTCACACATGCCCA
TTGGTCATTGTGTTTTTCTGGAGCCAGGCTGAATAGTCAAGCAGTGAAAAAACAATATGA
TGGGGAACCGTTTGGTGTATATTATGGCCATTATCTTGTTCATTTGTTGGGTTTCAGAGT
GTAAGCATACACGTCTTCATCCTCTATTATTTTATTGTTGTCATTGCCTTTGTGTTTTCA
GCAAGACAAATCAAAGCACTTATCATTTTCTATAAATAGAAAACTAATGCTTATATAATG
AGATATGCATGCAACAGGTCGTCTCGAGGCTGGGAGAAAGAGCTATCTAGATTATCATAC
AAAGACAAGTGTTAGTGTTATCACTGAGAGCAAGATTGATTTAAAGTTTTGTGTCTTGAG
AACATGTATTTCAACAACAAATTATAAAGCTTGCTACTGCTGCTTCAACAAGGGTCAACA
GGACGACCCCCCATGTTTCTCCACAAGGGAGGAGTGCCTCAGTAATTGTCCTCGTTGCAA
CCCCAAATGTCCTCTTCCAACTGCCAATGAATTTCATCCATGAGCGAGAGCTATCTTGTA
CGTTTAAAGAAGAAAGGAGCATGTGTGCACCTAAATATAGATCCGTATTGGGAAAAATAA
TGTATTGGTGCATTTTGTTTTTGCTCAAGGCATCATGATTTTGTATTATTTGACTCAATC
AAGAATTTCCTTTTGTTGACCAAAATAATCTTAGATTGTCATATTTTGTTGGACAGTTTT
ACCCATTAAATATATTAGTTATCATATCTTTGCCAAAATCATCCTAGACTGTCATGTTAA
TTTTGAAAGGTGTTGTAATTGTATTGAAAACTTGTGTTTGAGTTGTGCTACAGTAGGACT
TGTTTGGCGAAGAATTAGGTGTTTCAATCAATAATGTGTATCCAAAATAGATGAGTAGAC
CCTGCCAAACGCATATTCCTGCCCGACTTATCCTTTTAACGTATTTGTTTCGGATACAAA
CACGTTTACCGCATATGTTCCCACATATTTTAATATCCTTTCATCTCTAAATCGTTATGG
CTTTAATTAGAGCCCACAAAGATTGAAGCTAAAGATAATTTAGACTATTTGGATAATTCG
GTGGTTTGTTTTTCTTTTACTTCAATAATAATACAATAGTCTTTTTTGCGTATAGTCCCG
AAAAACAAGGTATAGCTATAAATATCCCACATAATGCATGTCTACTAATTAATCTGAAGA
TTATTACCGTATATACTTTTAATTTTGATAGATACTATATAAAACATACAAAACTCACGT
CAGGTTAACTGCCACTAATTAATCTCATAATTGATAGCACACAGATTGTATGTATCAATT
GGGATATCCGTGGGTTCACCTCAATCATCTATGGAATTATCTCATCACTAATTTCAGGAT
CTTCAAATAAATTAATTATCATATATTCCTTGATTATGCAGTTACGTTATTGAAGCGAGA
GAAGTGGACCATGTGGAGTGGTTGTTGCATGCCCCCTCCCGAGCATCAAGAACTCTCCTT
AGCGTGTGCGCACCTAAATATAGGTCTGTATTGAGAAAAATATGTGTTGGTACTATTCTT
TTTGCTTAAGGCAAACCGGTTTTGCATTTGACTCAAACATGAATTTCCCTTTCTTTACTA
AAATGATCTTAGATTGTTATGTTTTCATGTATAGTTCTACGCATGAACGATCTTAGTTAT
CATATCTTTGCCAAAATGATATTAGATTGCCATGTTGATTTTTTTTTCAACTATGAGGTA
ACTGTGTTGAAACTGTAACGTAATTGTGTTGAATATTTGTTTCTGAGTTGTGTTATAGTT
AGACTTGTAATTAACAGAGAATTAGGTGTTTCAATCAATCATGCGTAAGTGTGTAATCAA
AATAGGCGAGTCGAAGGGTGACTAGACCAGCCGGTCTGAGATGGTGTTTGTCAAAGATCG
TGGCTGCGAAAGCATCTCAACAAACTCATATGCAGATCGAGTCTTTTTTGGGGGGAAAGG
CCATCATGGCTAGCTTTATTAAACTCAAACAATAGTTACATCGTTCATCAATTGGCTAAC
TAAGAATTCAGGAGGTTCGTTAGTCCAACTGTCGTCACGTTTATTACAAAAACTAAATTT
TGCTAGCTCATGAGCAACTGAATTAATTTGCTTCACGAAAATAATGAGAAAAGATGGCCT
TTCCTATCGACGTAGACAAATCTATGCACTCGGCGAAGACCGCTGCAACTGCATCCCACC
ATTGATCTTGTCCTCGACAGCAACTGATGACGCTCAACGAGTCTGGTTCCGATTCTACTC
TGTTGAAACCCAAGGAGTTCGCCAAAAATAATCCATCTCGCATTGCCATTGCTTCAATAG
TCACAACATCTGCTGCCAATGGTATAAATTTACAAAACCCTGCAATGAAATTTCCTCTCT
CATCTCGTAGTACACCTGCAACAGAACCTGCCCCCTCATCCGCATGGAATGAGGCATCAA
CATTAAGCTTTATGAATCTTGGCTCCGGTCTCTTCCACCTATGCTCCATCGGTGCTCTTT
TCTGCATCATAGAATTTGTATAAGTTTTCACTATTGCCAGGATAGATGCATGCCACCTGA
AGTTAGGAGGAACAGAGTCATGATGAGTGTGTCGACAACGTAGCCACCAGAGATATCAGC
ATCCAGTCGCAATCACCTCCTTTTTTCTTCAAGTTTGGCATCATTAGCAAAGGTTGGTCC
GACTCCAGCAACAGAAATTCCAGAATTGCCGATCCCGATCTATCCACTTGTACAGCGAAG
TCAATACAATCTGACAGACCCAGACCGGCCCATAGAGCCTGACACAAATCTTTAGCCCCC
CTGTGACACATTGGGCATGCACCATCGACAGGTATATGTCTATTAGCGAGAATGGATTTC
AACGGGATGATTCCTCTCAATGCCCGCCAACAAAAGATTTGAATTTTCCGTGGCACTTGA
AGCTCCCATAACTCCTTCCAAATCGCTGCTTGCATCTTACTAGTTGATGATGAATTTGGA
TGATATTGACCTCTATACTTATGCGACCATTGTTCATGATATGCACTCTTAACCGTAAAT
CTCCCGTGCTTTGTCAAATGCCATGCAATGAAATCATCAAAGGCTTGGAAATTTAGGGGC
ATTTGCAAAATTCTAGTTACATCCACAGGATAAAAAATATCTTGTATCAATTGTTCATGC
CACTGCAGGTCGAGTTATGTTCATGTTCATGTCAATTTGTGTGGAGGTGCGCTTCAACTT
CATCGGGCACCAAGTTCCACAAGCCCCTTATACAAAGAACATAAAAAATGAAGCCAGCAC
CCGTATTCATCAAAGAGGCCAACGAACCCCTTATGCACATTTCATTTGTATTCTGAAAAT
ATATGACGTGAGCCAACGAACCAAAGTTTGTAGCTAACACAAATCATTAGAGTGCAATGG
AGTCGCTTATATATATATACTTTGCATTATGGAACTGCAAACATCCATGTAACGTTAGTT
CATGGCTTCATGCTCCGGCAAAAACAGATGGATATAAAATCTGAAATTTGAAATGCAACA
GTATTCAGTGCCAATTCGCAGTAGTTTTCAGGAACACTTCGTGTTAAATTGCCAGAATTA
CACATTCAGTACTTGAACTTCTTTTTGCTTCTATGAACTTGCTTCCTTCATTTTTCTTAA
ATAGCAGCAATCGTTAACAAGAAAACACAGGGAGCCACGCCCACTGTCAACGGTAACAAG
AAAAACAAAGTCTGAAAACGGCACAATTTGGTAGGACTTTGAGCTGCCTCAGACAGACGA
GCACATCAACCTCACACATAGAGTCCACAAAACAAGCTCAACAGCCCACTTTGAGCTGCC
TCAGACAGACGAGCACATCAACCTCACACATAGAGTCCACAAAACAAGCTCAACAGCCCT
CATAGATACCATATCGCCAAGCAAGCAAACGGTCGCACCAAGTGTGACTATATATATGAA
CATGGATTTTGACCACCCGTTCGTATGAAATGGTTTGGCCCCGACTATTCCATTTGTAGT
CTTTGTCCATTAATTCATTCATCTGGTAGTCTTTGGGCTCCAAACACAGGACAACAAACA
TAATTATTTTCTGTCCATAGTTTTTTAACATGATTTATTTCAGAACCACGGTTTTATGAA
GGCGAGAGTCTAGCCACTGGGAGGAGCAAGAAAGGCAATAGAGTGAGCGAGAAGTAAAGC
AATGATCTCATGGAACATATGGAAAAACAGAGTTTTGGGGGTCTCTTGACCACCAAACAC
CACCCCAAAAATAGCACGGGCCGCTGCCCTCCTAGAATCCACCCCTGTCGCCGCTATAAC
TCCAAAACGGAATGGCAGACTCAGCTTTACCAACTTTAGGATATAGGTCCAGCAGAACCT
GTTTTTGCTTGCCTTTTACCAGCACAGCATCATCCCCCTGAAAAAGCAGGCTCCAGCTCC
TCCCGAATTTCGGTTTCCAGATTCACTTCCGTTTCCTGCACAGACATGAACGGGCTCAGA
AAATTGAAGCGCGGGATCAGCAGCAAGCGAGGCGACCCCATCGTCGCCCAACATGGTAAG
AGATTTGTTGGTTTCGATTCTGATTTTTGTCAGGATTCCATCTTGCCCCAAGTACATGTT
CCCGATTCCACAAGGTGTTGCATGGCTTCATCAATGTTTTGCCACTCTCTTACCTGCAAA
GATGTTTGAACGCTCACCCTGTTGAGAATAGAAAATTGCCCATAGCTTAACCTTGGGTGA
CCGTTGGTTTGCAGGCCAAACTCCATATGATGAATGGGAGGAGCAACAACGATATTCGCC
TTCACCATTGGTGAGCTCATCACCACGGACGCCGCTGGTGAGCCCCTCACCACGGACACC
GCTGGTGAGCGCTTCACCACGGACGCCACTGGTAAGCCCTTCACTGAGGGCCCTACAGGT
GAGTCCTTCACCGCGGGCGCCACCGGTGAGCCCCACGGGGTCGCCAAAGACCCCAGGAGG
GAGCCAGAAGAAGCCAGTGCTGGGCAAGGTAAAGAGCAAGGCTAAAAAATGGATGCATCT
GCTGCATCACAAAAAGAAGCATTCCTCGCACGATGAGATGATAATGTGGACACCACGTAT
CGGGCCCAGCTCAGATGACGGCTACGGCAGGGGGGGACAATACGATGAGCGCCTTGGAAC
CCCAAGCACGGCACTACATCCACATTCATGTATGTTAAGTTCAAATGAAACACCACCTGT
CTAACTATCTCCAGTTCAATTCAGCAAAGACACCAATTCTTTATAGTTCAGTTGCGATGA
AACACGATAAATTTTTATGTCCATGTGAACTGCAGTTGCTGAGCCAGAGTACGAATCTGA
GGTCTACGTGGAAGCATCATCAAGGCAGAACACGCCAGCCCCGAGCCCCACTGCTTGCCA
GGAACAACCATTCTTCAAGGTCAGCAGCAGGTTCGAGTCAGAAATGAAGGAAGCCAATGA
AATGCTGATGGAATCGAAGAAGCTGCGGGTCAAAACATCCAAGCAGAAGACTGTGACATT
TGCACCGATACTAGAATGCGGGCCAGAAATCAAAAATAAAGGCTGGAGCGACAAGGAATG
CCCTGAAGCGACAACCGAAATATTCAGAAAGGCATATGCTACAGTATACCAGGCTGCCCT
CAAGATGGTCTCTATAATCCAAGATACAATGGTAGCATACAATATAGACAAAAGGCACAT
GGTAGAGAAATTAGTATCAGTTAATAGATACCTTCTGTTCAAGCTGGAGCCTAGTCCAGA
TGACGAAGCACTTGCGGAAGTCATCACTGAGGCTGTCCTAAATCTGTTAGACGCCTGGAG
TGAGAATGTTGAAAGGCCTTTGATGCAGAAGGCAAAGAAAATTTCTTCTTGGTTCCTGCA
AGAAGGGAGAGAAAAATTACCTCCGGTTCCGCTGTCTACACATCCTTGTGCTGCCGAAGG
TAAGCCACTAGTGTGCAAGGCCAGTCCTATCTGCAAAAATATTTTACAGAGCATTCTATT
AGCTAACTGGAAACTTATGCCATGCAGATGCAGAAGAGTTCTACTAATCAGAGGGTTAAC
TACTGCTTGAAGCAAGAGATGAACACAGTGACACGGCATCAGTAGAGAGTTATTCACCTT
ACAGTATATAGATGCTGGAGGCGAGGACAAAGAGCATGCCCCGAGTATACTTTGTTCGTA
GAATCGGCAGTACAAACATCTTCTGTGTTGCAAAATGAAACCAAAGGAGGTTTCTTTACC
TTTGTACAGGAGAGTAAAGTAAATGACTACAATGTTGATCAAGTTCCTCTTCAGATAAAC
CTCAGCACTATGATTCTGTTACAGATTCAACTGACAATAACTGAACCAACAAATGCTCAA
TTCTACAGTTAACTTATGCAAAAACAGGCACAAATAATGCCTATCAAAAGTAACACAGGT
GAACTTCCAATAAAATAAAGAAATTGATACCTTTTTCCCAAAATACTGAGATTGCAAAAG
GATAAGTTACATAATTGTTTGGTCTTGCAACATTCACTGGCACAACCGTACATACATAAC
ATCTCAACTATTTTAAAGGAACATCAGGAACTACGGGTTTAATACACACACAGTATTTGT
TCATATTGGCAAGCGCCGAAAGTTCCCCTGTGTAATCTCTGCCACTTCAATTAATAGCGT
CATGCATGTCACTGCAGCTCATATGAAGAAAAGGTGAACCCAGATTGTTTCTCGTTGGTG
CACTTCAATTCAAGCTTCTGAAATGGACTACACAAACAGAAAAGAAAAGATGTTTGGAGC
AACTTCCTAATTAAGAAATTTCATGGTAAGCTTGCAATGTGTAAACTGTGCCAAATTATT
TATTACCTGCTGTTTGGGTCGTAATAAAAGCCACTAATGGATCCATCGCTACAAGAAAAG
CAGACGTAATAGAAACCAGCTATGGTCAACCCACAGTCCACTCCCACATTGACAAAGTAC
TGCTCTTTCCATCTCTGCAAGTAGCATCGGAAAATTGGAAGCTAATAAATTTAACAGCTA
AGCATTTCAAGATGTGATGATGCTTCTACATATGAACATGTCAGGTGGTATAGTACCATA
AATATAAAGGGATAGTTGCTAAGGTCCACAGACTTGCCACCATCTGCCTCAATCTGACTC
TGCAAAACAAAAATAAATTAGTAACGCATTCGCAAATTCATGTTGACTGACTACACCAAT
TTAAGTAATTGATTACCAGAAGAGGGGTAAATGATGAGAACTTGGACCAGTGTCTTACAT
CATCCTCTGCTCTGCAAAACAAAAACAAGAATTGTGTTTCCAAGAGTAAGTTTGGAATGT
TATCCTGCACCGGGACATATATGTGTGAACAAAAGTTAAATGATGGCATTGGCATAAACA
ATACTCACGATGCCTCCCACTTGCCAGTAAAAAAAGTATAATTTTTAGCATCTACTATCT
CCCCCTCCCAGAATGTCACCACCTATGGAAAGAAAGAGAGCCAATAACGAAGTTGAAGTT
GATGAATAAAAATAGACCGTAAGGGAAATGCATCAACTATAAATCTAGAAACGATTATCC
ACAAAGTACTTTATTTTTCCTTTAAAACCCCAATACTTGATTTTCTGCCCGTTGGATTTT
CTTCTTAAGTAGTGCAATTGTTTCTAGAACTATAAAAAAAATCAGATTGCCTCGGAGAAC
TGAATGCTAACTCATTGGTAGAAGCACTGCCTTGTACTCCGAGCGAGTCGGCTACAGCCC
CCACGGGGGTGAATACCGCACCCAAGTTTATTGTTTCTTCTTCGAAAAAGGCCTAGGGTG
CCCTCCACATCTGGTCTTCTTCCTGAGAGAAATCAGTCTGCCTCTGCAGCAGCACATTCC
TCTAGTTCATTTTAAAAATTCTATGCTGGCCCAATATTTAATTTAATGCATCTAAATGCG
CATTGACATTGCAAATTTAGTAATGATAATAAGACAAAAGAAACTAGTAGATTCCGTAAT
TTATAAAAGGAAAAACTGGTTTTGATCTGTCCATAAATGTTTCTCGAGGAAAAGATATAA
CATATAAAGTCAGGGAGTCAAAGTGGAAGAAGAAACAAGATTCTTACAGGTGTGTCGGCT
AAGGGAACATTAAGTGCCTCCATCGTTCCACATAAATAACCCTGTTCCATATCACAACCA
TGGATACGAACATTGACTTTCCATGCTTCATCTTTTTGTAAACTTGAAACATTCTGAGTT
CCTGCAAAACACTGGATGAAATATACGAGTAGATTAGGCCAATTCACAGTAACATGAACA
CCCCGAAGCTTTTATTCGAGGATAGCAAAGAGAAAAATGGAGGAACAACACGACTCTCTA
GCTTGACATCATACCCAAACACAGACACTGTTTTCCCTTGCCGTACAAATGCAAGTAATA
TATTTCACATTTTCTTTATGGGAGAACACGGTGGTAACAAAAACCAGTCATGTTGCATGA
TAACTGCTGTTTCGGGCAATCCTTTTGATACAAAATAATTCAAGCTTCAGTTGTTCCATC
TCAATCGAAGATTCAAGTATGGCATCAAAAAGACTTACTCTTCCAGCAGTTAAGAGTGAA
CAGCTAGGAGGAGACGGCTGCACAGCATTTGCATCTTGACCTGCAACAACAATTTCAATC
AGTGCTATATGATGAGCTGCCAAACTAGTAAAGCGTCATAAAAACAGCTAAGACCACAAA
GCAATAACCATGTTAATTTTTCAAAAATTGATTTCAGACCCCCAATGCAAAAGCGCGGAC
CAAATTTACGGTCGAACTGTTCTTCGAAGGACAAGAACCCTAGTTTCTTTTCTCCAAAGA
CAGCGACTTTTTTATCAGTCTCGAACGGCGTAACACACATTCACCGCGCATGAATGATTA
AAATCGGCCAAGCATACGCAACACATGATTATCTAGGAATCTTCCTTACACAGCTGACAC
GGAATCAAAAGGAATTCAGAGGTCAGAACCAAAATCAGTTGTACCCCGAATCCCCAGTAC
TCCCAGCTGGCACTGGAGCAGCAGGTTCACGGAATCATCTGGACCCTCCAGATCACAATA
ACGCGTTGCACGTGTGGCCGGATTACAGCAGCCTACCTTACGCAGTCAGAAGGATACAGA
GCCATAGGAATCCTAAAATCGACAGTATACCAAACTACTCGCACAATCCGGTCAAACCTA
AGAGTAATCTGGATTCTACACGCGCTGGATCGATCCGGCGAAGGTGCCAGAGCAGTCTCC
GATCGGATCTAGAGCCGGGAGCCGCGCGACGGGCCAAAGCGGGCGCGCGTGGATAGCATA
GAGATGGAAGGGGGGG