Contig Data
morexGenes
Links



Map Locations of contig_71249 (3251 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_71249

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_76398 1 483 bp None Available Available None
MLOC_76397 3 2039 bp MLOC_76397.2 Available Available LOC_Os01g65760.1, FRAME:+3, EVALUE:3e-27, 13101.m07109 protein retrotransposon protein, putative, unclassified, expressed





CDS Structure of MLOC_76398






CDS Structure of MLOC_76397






Contig Sequence (3251 bp)

>contig_71249 3251 assembly3_WGSMorex_rbca.fasta
GAGGGTTCTAGTCTTTGCCCCTGTTTTTCAACCCTTGAAGGTGTCAAAAATGGCCAATTC
TCAACCCTTAAAACTNNNTTTAGATTTAAGGGTTTGAGGGCTCTACTAGACATGCTCTAA
TTATTAGTATTACTATAGTCCCCTGTTTCCTGCTTGCCGGAGCTCACTGAATCCGTGGAT
CTCGCACCTAAGGGCTCTCGTTGCAAGATACCGGTTCGCAAACGGTGCTCGTTGTACAAG
CGTCGATCTCCAATCCAACGGTGGTAGTTCATTTGGTCGTCGTTGCTCATCATCCGGCAA
CACCATGTGCGCTGCTACTTTTCTTTTGCTTTACCACTGCTTGTAATGGCTATAAAGCCA
CCCATTTCCCTTTGTTTTTGGTCATGTTGAATTGTATCGGGTGTAAACCCTAGCCGCCGG
TGACGTGCTGCACTACTTTCCCATTTGTCAAGCAAGAAACCCTAGCTCAAAATCCCCCAA
AATCATCTCTGAATTCCAGAGTTCTGTGTTAAGTCCCCCTAATTCGAGTCCAGGGCATGA
CACTAGTCCAGGTTGGATTAATGAAGTCCCTGGCCATATCAGCCCCAATGATGACCATGA
AGTCATAGAAATGGGAAACAAATGCTCTCAAAAGTTCTATCCAGATTAAGATGTGTAGGA
AATAAGCCGTGGCAGGGCTTAGACGCGAGCATGTGCGTGCCCGCTAGGCGCGTCGGGTGC
AAGCCGGGGCAAGACCCGTGCGTGTGTGTGCGCGTCGGGTGTAGGTGTGCGTGCGTGTGT
TCGTGCGTTGGTGCAGCTGTGCGTCGGTAGGGCAGGACCTGGTCGCGAGGTGCCATTAGT
TGGCCGCGTCGTCCGCATGCGCGAGTGGCGGGAACGTGGGCCGAGTTGGCGCGGATCGTG
GCCAGTGGGGGTGAGCGTGGCGCATGCGGGTGCGGGCGTGTATAAAAGCCGCCCCGGCCG
ATGTAATCAGCAGCGAGTTGAGTTTGCGCTCAGGAAATAGAAAACGTCGTTCGTGCGGTG
GGAAGGCGTTCGTGCGCCGGCAACACTCGTGTCCATCACTACGAGTTCGCGCGGCGGTAT
TTTCTTCGATGATCACCGCGGCGGCGCAGTTCCATTTTGGTTCCAACAATTGGTATCAGA
GCCACGTGTGAGAGGGAGCTCGCCGGCGATGTGCCTGGTACCGTACAACGGCGGCGGGAC
GGGCGGGTCGTTGCCCGCGCACTGCCCAGTGCTCACCGGTGAAAACTACACCGTGTGGGC
GATCAAGGTGAAGGCCAACCTGGATGCGGCCGGGCTATGTGAGGCGGTGGTGCCGGCGGT
GGACTCAGCACCGGCGGTCATCACCAAGAAGGACAAGCCGGCGCGGGCGTATTTGCTCGG
GGCACTGTCCAAAGAAATTCTTCTGCAGGTCTGCAAAGAAGACGGCGACGGAGCTATGGA
ACAGCCTGTAGACTCGTACGTCGGGGCAAACCGGGTGCGGGCAGCGCGTTTGGCGACGCT
GCAGGGAGACTTCGAGCGGCTGCACATGACGGAGGCAGAGTCACTGGATGCGTTCGCCGG
CAAAGTCGGCGGGATAGTTGCGCGGTACACAGCGCTCGGGGCGACCCTGGAGGACGCCGC
CATGATCAAGAAGCTGCTGGATTCCGTGCGGGATCGCAACGCGGCGGTGGCCGGGACGAA
TCATGCAATGTACCACTAATTATTCACCGAAACGGGGATATAATCAAATGAAATCGCGTA
ACTGAACAGCACAAACCTCGCAAAATCCACACAATAAGCACGCGGATCAGCAAAATACCC
ATCGGATCTGCACAAATGGCACAAAATCCAGACGAATCGCGCGACATCGCCCCAATACAA
ACCTAACATGCGTCGCGCCACACCGGAGGAGAGGCATGACGAAGGGTTCGAATCAGGTAC
CTCCACGGAGCAGCTGCGCCTGCCACGGAGCACGACCTTGTCGAGGCCGCCGGGGGCCCT
AATATACTCCAGGAACGGCGATGAAAGCTGCGGCGGCGAGTGGGGTGTGGCTGCGGCCAT
TGCGTTACGCGCCCAAGCGACGGCGTCTAAGAACCCCTAGCCCTAGCCTGCGCGCTCACC
CGCAGATGCACCGGTTTTGGGGGGTTATTTGGTGGAGAAGGCATTTAGAAGCGGAAAATT
AAGGTGGTTATTTTGAAAAAGTCAAAAATCATATTTTGAAAGTAAAAAAGAAAAATCATA
CATGTGAATGTGAATTTATTTTACATGGGTGCAAATTTTTAAATAATATACATCCGCCTA
AATACTCCATGGAGGTCGCACCGTGGGCAACCTTCATGAAGGTGGTTATTTTGAAAATGT
CGATGGTGACACGAAAATGCCCTACAACGTGGTTGGGTCGCTGTAAAACAGTCTTGCGGT
GTTGGGGTGATTCGACGATCTATGGGACTGGCAAGGCCCCCTTGCTATGGTTCTGCGTTG
ACTATGTGTGCTCAAAGAGCATCACCAAAAGGTGCATGCACGGTGATTTAGACAGGTTTA
GGTCAATCGGAAGCGTAAAACCATATGTCGTGTGTTCTCATGGATTATGTGTTTGTTCAC
AGTAGAGATGTGCTCATCCCGCAAGGATGCTCGAGGGCAACAACTACGCGTGTAGAATGA
AAGGGGAGTCGACCTTTCTAAAGGTAGCCCTGGACCTCCTTTTATAGCCAAAGGGGTTAC
CCGAGTGGCTAAATTGGTCTTTTCGTGGGAGAATAGTGCACACGATTGCTGCCAAAACTA
CTAACAGAAGCTATCGTGGGAAATACCTAACTCTGACGGAGAGAGATGGATGCATAAAGT
GCGTTGTGAGGTGGCGCACTAGCAATGTTCTCCGACAAGGATTGCCTTTGCTTTTGTGTT
GTTCGCCCAGCTACCTTTTATTTACTTGGCACGCCGCAGGACGAGTGTCATTAAAGTTGT
TGCATGTCTCTGACTGTTACTAGAGGCCTTTAACTAGGCCCATCTAACCACTCGCACGCT
CGAAACTTCACTAGTGTTGACAATCAGCCCGGTGAGATGGAGCGGCGGAGATCCGGAGGA
GTCCTGCCGGGGCGCAGCGGCTGTTAGGTCTTCTTTCTCCCGGCAAGGCGGCTTGTCGGG
GCCTTGTTGTTGGAAATATGCCCTAAAGGNNNNNNNNNNNNAGTTATTATTATATTTCAT
GTTTCGAGATAAGTTTATTATCCATGTTATAATTGTATTGAACGGAAAAATACATGTGTG
GATATATAGAC