morexGenes - Barley RNA-seq Database

Contig contig_70920

Source Contig contig_70920

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_70920 (3845 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_70920

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_76311	2	1512 bp	AK375025	Available	Available	None
MLOC_76309	1	467 bp	MLOC_76309.1	Available	Available	None
MLOC_76310	2	1311 bp	MLOC_76310.1	Available	Available	LOC_Os06g01920.1, FRAME:-2, EVALUE:7e-80, 13106.m00104 protein expansin precursor, putative, expressed

CDS Structure of MLOC_76311

CDS Structure of MLOC_76309

CDS Structure of MLOC_76310

Contig Sequence (3845 bp)

>contig_70920 3845 assembly3_WGSMorex_rbca.fasta
AATACCCAATACACTACCCCTACCTAGNNNNTTGGGGATAAATGGGGATTTGAAGGGATT
GGGTGAAGGTTGGGATTTCATCCAATCCCTTGGAGATTATCCTCACCAATTTCTTAAAAA
ATACTAGTACCAAACAAGGCCTTAAGGGAACCATTTCCTTTACACAGCTTATAGCCAAAC
AAAATTTGATTTTTCCAGTCCCGAGCCATTTCATCCTTCGATGGAAACAAACACCTCCTC
AGTTTCAATAACAATTTTGGGACGCCCAGAGATAACATTTTTTTTTTTACAAAAATGCAG
TAGCATCATAAAATGGGGCCAGAAACGAATCAAGCTCTAAAACATACACGCATAAAGGTA
CGTAAACATCATCATGGAGATCATAGCTTCGAGTGAACAAAAATGAAGTCGGCGACACAA
AAAAGGAAGATATTAATTAATTACTGAAACAAAAACACTTGAAGATCGATGATCAATCGA
AGTATACAAGTAGTAGGAATGTATATGGTCGCGCGCCATGCACGGATGGATGAAGCATGG
CCGGATGGAATGGGATGCATGTATATGCATCTACCAGAAGTTGTTTGATCCCTGGTAGCA
GAGGCCTGGGCCCCACCATGCTGGGATGGCGTCGCCGACGATGATGGTCTTGCGGTCGGT
GCCGCCGGTGATCCTGACCTCGAGGCCAACGGACTTGTCGAGAGCGGCGAAGGCCTGGTA
GGTGATCCCCCAGTTCTGCGTCATCTGGATCCACTGCCCGCCCTTCTCTCTGACGGCCAT
CTCGGCGACGTCGCCGCCGCCGCCGACGTTGTTGACGTGGAGCAGCAGCCAGTATGGGTT
CCCCATGAGGCAGAACTGGACGCCGCCCCTTCTCTGGCAGGGCACGCGGCGGAACTGGAT
GGGCACGATGCCGGCGACCCTGGCGGCGAGCTTGTAGAAGGAGGGCGGGGCCATGTCGAA
GTGCCTCGGGCGGGTTGCACCAGCCGCCGTTGTCTCTGTCCTGGTAATAGTTGGGCGGGC
AGAGGTTGGTGCCGGTGATGACGACGGAGGGCGACCCCGGCACGCACCACTTGGACTGCA
CGCACCGGATCTCGTAGCACCGCCCGCACCCCGCGCCGTCCGCGAACAGCGGCGTGCTCA
TCGCCGCCGTCCTCGTCGAGTAGAGCGACGCGATGTCGCTGCCGCTGTACCCGCACGCGC
CGCCTGCATTTCATCACGTACGTACGTGGTTAGCGGTGCGTGCATGCGTGCATGCAGCTA
GCTAGCTAGCTAGGGGCGTACGTACCAAAGTCGCCGCCGAGGCCGGAGTCGGAGCCGTAG
AAGGTGGCGTGGGCGTTCTCCCAGCCGTACGTCGGGAAGCCGGTGGAGGGGACGCTCGGG
GTAGGGTCCTGCCAGTACTGGGGAGTTAAGCCTGCGCTGGCCAGCTGGGCCGCCGCCGCA
GCCGCCATCACCAGCACCGCGACGATCGCCGGAGTCCTCGCCATGGTAGCTAGTCCAAGG
TAGGTTGCTGGGAGACCGATGTCGTCGTACGCCGGAGTTGATGATGACCGTACGTCGCAG
GCGAATGCAAGTTTATAGTAGAGACTAGAGAGCAGAGCAGAGAGTTGGTTGGCGCCACGA
TCGACGCTCATGTGCGTGTCTCGACGATCGAGTTGGGCGCACGATTTGCTTCAGTTTCTT
TTCTCCTCGCCGGCCGGCCGACGGAATTCATTCATTCATCGTTCAATCATGGGCGCACGT
CTGTGGTGGTTCGTGTTCCATCGCTCAACGGGCCGGAAGAAGCCCAATCCAGCCCCACCA
ACCTGGGCTTCGGCGACCATCATTTTCGTTTATATAAAAAGAATCTCATACACACTTAAA
TGTATGACTACCCCTCAAAAACAAAAACTTATATGTTTTGACTTCATCTCAAAGAAAACT
TGAAGATTTGACTTTCTGCCAAGATAAGAATATTTTTAATTTTCTGCCATACAAAAAACT
ATTTCCATTTTCTAACACCATTCAACCTTCTGACCTGTACATCATGTACCTGCCCTTTTT
TTTGTTGGAGTTGATAGGCCAACATATGATCGGTCTCACTCGATCTAGCCAACATACGAG
CCACGTCAATAGCACCACTTCTTACGCGAACAAGAAAGAAACAGAGCTAAACCAGCATGG
GAAATGCATATTACACCGCAATGTTTTACTTTTACCATGACAGTTCTTGCAACATTGTCT
CTCGAGTACACACCCAAGACGACGATATCACCGAAGGCGATCCACACTATGTCACCAAGG
GCGATCCAAACTATAAACATATTATGCAGTTACAGTACCGTTTGCGTGTCACTCTGGTCA
TCAAATGCAGGTGCAACAACAGAGCTTCAGGCACGCATAAGTTACAGCAACCTCCCAGCC
CACAAGACAAGCAAGTTACAGCAACCTCCCAGCCCACAAGACAAGCAAAGCAACACAAAG
CCACTCACTCAGAGCCCAGGGCCACTGCCCCTGTCGAGGCCGTAGTCGGTCATGCCCACG
CCAGCCTCGTTCTGGTGTTTGATGAACCCGCCGTCGGCCGCCTTCGAGTAGCTCCAGTAG
TACACCAGGGAGGCCACCAGGTTGATGAGCGTCATGGCGGCGGCTGCTGCAAACACCCCC
TTGCGGAGCGCGGCGCAGCTGACCAGGTCATGCTTCGTGTAGTAGCCGAGGTACTTGGTG
TGGTACGCGTTCTTCGCGGATCCTCCGACGAGACATGCCTCCGCGATGAGGAACGTCAGC
CTGGGAACAGGTATGAACATGGCATTGTCAGAATGATAATGATGATCATGACCAAACAGC
ACTTCTCATATGGCAAAACTGTAGTATGTTCTAATGGACACCCTTGTATGCATAGCGGTC
CTGGGTATCGAGTCTAAGTAAGCAATTATTACAGAGAACGGAACAATGTCAACGAAGCAA
TCTATAACAGGAAAAAGATTTGTAGAGGTCGACTATAACTTCCTGTATAATGAAGTTAGT
CGACTTCTCCAAATCTTTTCCCTGCTATTATGAGGTTCTCACAGTAATAATAATCTAGTG
CTCCTAATTGCTTCTAGTCTGCTTCTAATGAGATTGTCACATTGCTTGTATTTTTCGAGT
CGTAATAAGATACGCTTCACTTTTCTCCACACCATATACATTCCCACACAATGGTATTTC
ATAAATTACATAAGCCATAACATTCCCAAGAGAACGAAAATTCATAAATTATTTAACTGC
TTTGCTCAGATTAAGTAGTGTGTGTTAGTTAATATAGATCGGAGGGAGTATAGACTTCTG
AATTGGGTTTAGTAGGAAATAGCGGTAGACTGTAACAGAGAGTAAGAGAACCATTGATTC
CATAGTAACCAATTAATAATAATAAAAATGACAACTTAAAAGAACAAACTTAAGGTAATG
GTAATATTATGAAAATAAGTGCTGAAGAATAGGAAAGCTCAAAAGACTGTATATGATGCC
AACGACATAGACCGCTTGGGAAAATTAGTCAGTCACCCTTCATCCTAGAGTACAGAAGTA
TGCTCCACTATAAAACAAGTTAAGACACTTCATTATATACCCTCAATGAAAATGTGTACA
TTAAGAAGATCAAGCTTGAAGCCCCTGAAGTATGCTAGCTAGGAGTTAGAAAGATCTAAT
CATCATGGAACAGAACCTTGACGATATGCTAGCTAGACTTACAAGAAAACATCAAAACAA
GGCATGAAAACAAATACATAAACGAATATGTAGGTAATTAAAAGATTTTCTTAGAGAAGC
TCATACATTTAACTGTTTAGAAATAAACTTATAGACTTTACATACAATAGTTCTGACAGC
ATTAC