morexGenes - Barley RNA-seq Database

Contig contig_70834
Source Contig contig_70834
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_70834 (5812 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_70834

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_76283	2	1785 bp	None	Available	Available	None
MLOC_76282	1	922 bp	None	Available	Available	None
CDS Structure of MLOC_76283

CDS Structure of MLOC_76282

Contig Sequence (5812 bp)

>contig_70834 5812 assembly3_WGSMorex_rbca.fasta
CAACCAGACAAGCAGGACGTAGGGTTTNNNNNNNNNNNNNNNNNNNCCTGGGTAAAAAGG
CTTCCCGGGTGTTGATCGTTAGCTCTTCTCTTGACCTCACTTTTCCCCGCCCTACGATCA
CAAGGGTTTCACGTTGATTTCCATAGTTGTCGACCTAGCATCGCCAACAGCTTCGGGCAT
GGTTTGTTTAAATCAGTGAAATCAATGCATAGCCTCCATTTCCCATTTGCCTTGCGCACC
ACTACCGGGTTAGCTAACCACGTTGGATGTACGACAGACATACAGAGCAGTACATGTCAC
ATGGAGTTATAAAATTTGTCTTCCCCTCATCTTCTTTGGCTATGAATATATGATGGTATC
CGAAATAAGCATCCAGAAAGGAAATCCTATCACATCCGGAAGTGGCATCAAGTATCTGAT
CAATGCGCGACAATGGAAACGGGTCCTTCGGGCATCACTACAAGAAATATGCTAACTTNN
NNNNNNNNNNNNNNNNCACCGAATGGTCGTTGATTTCCATTTGCGACCTTTTTACGTACA
AAGATAGACGGTCTAAAGTTGAGGGCCTCTAATTAACTATAACGACCTTTTTTCTGGAAT
GGTCGAAGACATTTATGACCAAACAAAAGGTCGTTGGTTCTACAACCAATTTTTTTGGTC
ATTGGTTGTCTGCTGAGGCCACGTCTGATACAACGTGGCAAGCTAACGTGGCAGAGTTAT
GACCCATTCGATTGGTCATTGATAAGAATGAGCCCGGTCCAGTTTGGTGCTTTAGATGGG
CCGAGCCCACTAATTCAACCTTTTTAATATACATTTTCCCATTAATTTTCACTAGCTACA
TGGGCCAAGCCCAACATTCCAACCTATTTTATTTTTAGCCCTTGGACTTTATAGTCAATT
GATTTTCTAGTTTCAGCTATTATATTTAGAGCTGGTCCCACTAGTCAGATGGGTCCCGCA
TATCATAATCTCATGCGTTAGTCCGACACGTTAGAAAATTCAGAATCTCTCAAACTATTA
TGAAAAGTGGATCCCACTTGTGAGGTTTCCATTTCACACATTTTCAAATCACATACATAC
TCACTATTATAAACAAAATAGAACAATTGTAATTCAAAAATAGACAATATTTCATTCAGA
AACAGAGAGAAGATACATGAAATTCCAGAGTTTACATCATGCAGATAACCCAGCTATCAA
TACGTAACTTTTTATACAAAAATATGTTATCCCTTCTTTGAATATCTTCAGCCTCGCTTC
ACTTCTATAAGAGGGAGAACACTCGTCTTGAAGTTAGGCAAAATATCTGCAAGTATATAT
CATCAAAAATTAAACATGACATGAGTTGAACAGTGCGGCATACATATCAAACGAATGTTC
AGAATACCAAATATCATGGCCTCACTATTAAGCATAACGAAAAGTTTAACAAAGAAAATA
TAAATCATGGAAACATGCATATTAGATCTTGGAGGATGGGGTCAGGGCTAAACAATATAA
CCAAAATTTCACAACAATCTCCAAAAATAGTATCCAAGGAGAGAATACATGACAAATTAA
TTCACTAAGTTTGGTGAGATTATCTAGCCATTTAATTCACTATGTTTGGCCAGATTATAT
GGCCGTTTAATTCACTAAGTTTAGACAGATTATCTGGCCATTTAACTCACTAGGTTTGGC
GCATATATTGTTGTAACACTGAAGAGTTGCAGCATTATATTTTGCAAGATGCAAAGCATG
GTAGCTTCATGCCCCTGAAATGCCAAACTAATTAACTTGAAACTCATGCGTTGGAACAGC
AACACAGGACAATACAACATGCAATATCTAACATCTTAACATATGAATATGTTCACTTGC
CCCCTTGACATGTTTACTAGTAATATATATCTAACAACTTAACATGCAATATCTAACAGC
TTAACATGCAATATCTAAAATATATATCTTTAGCCTGGCTTCACTTGTATAAGAGGAAGA
AACTTTACTGAATTATATGACATGTTTCCATTTGCGATGACCTACAAGGATTAAATGATG
TGAACCTGATTCATGTTGCACATATATCCTTCCCTGATATTACCTACTTTTCTGGTACTA
ATGTACACTAACTATGACATTTCTTCCTCTTTTATGGTCAGAATTGCAATCTGATTACTA
ACCACTAATCATATTTTTTTAATTTTACATGAGCATGAGCCCACACTGAATGGTTTTGCA
ACTAACCAAAGAGGAAGATTATAGCATTTATCAAGTTACTCATGATCAACACATACAGAG
TCAGGCTAGAGTAATTAGGCGTGTAACTGAACGAACTATAGCTAGACGAATCACCATGGT
GGATCTCGTCGAGCCAAAACACCAACGGCACTGGTTTGTGCTGCATGCTGTTGTTGCCGT
GCAGCAAACCAGCGACCGACTCCCAAGAGATAGCAAGTCCGTCCTCTAGCAAGATCATAT
ATTTGTGAACAATTCGAAAAAAGGTGTAACAGCTAGAGAACCTAGAGCAAATCGCGTACA
GGCCCTTCAACGCCTACGGATCTAGCGGGTCATGGCACATACTACACCGGATCCGCCAGC
ACCGATGGATCTAAGCATGGCGAGGCGAGCAACAAACAGAGATCCATCTACTAGCATGTC
GAGAGACGGACGGGGGAGGGAGATGGATCGCGTACCCTCGTACTTTCTGTAGTCATCGAC
GCCACTCGAGGTGGAGGAAGCCCTCGCAAGACCCCATATGGACGGTGTCGAGGAGGACGT
GACCGGAGTCGGTGAAGAGGCCCTCATCATGGCGTTGTCACCGTTGGAGTCGGGCATGCC
GAAGGGGTGCGCGGCGGTGGGGTCGTGGCGAAAGGCGTAGGGGTCGGGGGAGGCCAGGAA
GTCGTTGCCACCGCCCCTGAAGACATGGACGTTGTCCGCACCGGAGGAGGATCCATCAGA
GATGGTGACGAAGGGGCGCGTGTGTCAAAGGCAGTCACCATGGCGTCGAGGTCTGGAGCT
CGAGGGGATGGGGAGGGTAGTGATATGTTTTTTCGCGTGGAGGTATCGGCGAGTGGTAAG
ATGGAGAGGGATGTGGGTGCGTGGGTGCGTGTGTGGGTGGGACGTGGGCTGTCGTTAGAT
CGAGAGCATCAGACGCGGCCGCTGGCGAGGTGAGATGCCACGCGGGTCTAGGTCAGTGGG
TTGAGATTGGAAAAGTGAGGCGGGTCCTCTCTCTCACAGCGAGGCGAGGAGAGGTGGAGT
GGAGGAGAGGAAAGGAGTAGTTGTGTCACAGCTGGACAATGGCGAGGGGGCGCTGGTAGG
AGGCGGATCGGGTAGTGGCCGTGGGTGGCAGATCAGGGAGCGGTGGTGGGTGGTGGGAGA
AGAGACGAGCAAGAGGAAGGTGGGGCCGCAGGGTTTCTCGGTCGGGTCTGGAGAGAGTGA
GACTGAAAGGGTGGGTGGGTAGATAGGGTTTGGTTTCTTGGGAGATGCTCCGCCATTGGA
TGGGTGTGTGATGGAGGGACTAGATCGCGTTTGTTGGGGTGGTCCGCGTGGAAGCAGTTC
CTCACCTCTCATTGGTTGACTGGCTCTTCTTATCCCCGTGAGATCCTGTGTTAATCATGT
ATCTAAAAATTAGACCCACATCTTTGAATTTTTTGAAATAAACTACCAAATATTTCTTGC
AAAAATTTAACTACATCACTTTTAAAATACCAGGACACATTTATGACGGTTGCTAGACAT
CATTCGGTTGTTCTTTTTTAAAGATAAACCTCCAAACCAACCATTTGATTCAGACATGCA
TAGCCATTTGATCACAAGTGTGCAATGCATCTTACTTCCCTTCCCTTCATCTACATCCAA
TAAGATTGGTGACGAGACACGAGTGACATTCATTTGCAGTTACGCCATCCGGCATTATCG
TCGTCGGTGTGCTACTTTGCAGTTTCGTACCACCATTGAAAATTTGGAGCGCCGACAGAC
TCCAATGTTGCTGCATTACATCACTGACGTGCGCCGAGAGACATTGACTAGGTTGCATCG
CAACACTGGTCATGCTCGTCGTTTTGACCACATTTTGAAAACCTTCGCATTGTTTATTAT
ATTGTGCACGAGCTTGAATATGGGAATGGCAAACAATGTTGCGTGAGGAAGTTTTCATTT
TCTTTGGACGAAAAAAATCATTTTCCTTTTTTCTAGTGCCCAAAATGAGTTTTTTTGTGA
AGTACCTACCATATATTTGTTGCAAAATTGGAACAAATTATTATTCTATAATACTAGGTC
ATATTTGATGTACAATTGACCAAATGAGTTGGTGTAAATAGCTTTTATCCCCCTCTTGTG
AAAAAGATAAATTTCCGTCAATTCATCTTGAAGCGGGTCAAATTTGAATTGCTGTTGCAT
TCTACTTTGCTCTTTATTTTTTGCAAAAATATTTTTTATGTACAAAAGTATATATTTAAT
AAGAGAAAAACCTAAAGTTTTCCAAAATTCAACCACTAGATAAGAACGGTCATGCCCGCT
GTTTTGACCGCATTTTGAAACGGGCATGAAAAATTCACAAAAAATTAAAAAATTGGAAAA
CCTTCGCATTGTGCCATTGAATATGACCAAGTTACGACTGAAAATAATAAACTTTTATTA
CGACAATTATTTAAGAAAATGTTCTCATAAATGAGCTATAATGTATGAAGATTCATGGCT
TTCAAGCCAACTCATCAACCTTATGGCCACATTCATGGCATAGTTTTCTCAAATGATCTC
ATATTGTGCACNNNNNNNNATATTGGAATGGCAAACAATGTTGTGTGAGGAAGATTTCAT
TTACTTTGGACGAAAAATTCATTTTCCATTTTCCGAGTGCCCAAAATGAGTTTTTTNNTG
AAGGACCTACCATATATTTGTCGCAAGATTGGACAAAATTATTATTATAAAATACTAGGT
CATATTTGATGTACAATTGACCAAATTGTTGGGTGTAAATAACTTTTATCCACCTCTCGT
GAAAAAGACAAATTTCCGTCGATTCAGCTCGAAGCGGGTCAAATTTGAACTGCACCTGCC
TCATCGTTTCCTCTTTATTTTTTCCAAAAATCATTTCTAGGTGCATAAGTATCATTTTAA
TCACAGAAACACCAAAAGTTTTCCAAGATTCAACCACTAGCTAGGAACGGTCATTCCCGC
CGTTTTGACCGCATTTNNNNNNNGGCATGAAAAATTCAAAAAAAATGAAAACCTTGACAT
TGTGTCATTACATGTGATAGAGTTACCGGGAAAAATAATAAATTTGTAATTCTACAATTA
TTTGAAAAAAGTGTTCTAAAAAATGAGCTATCATGTGTGAACATTCATGGCTTTCGAGCC
AAATGATCAATCTTATGGCCACATGCATGGCATAGTTTGTTAAAATGATATAATATTATA
CAGAAGGGTACATATCGGAATGAGAAACAATGTTGCATAAGGAAGTTTTCGTTTTCTTTG
GACAGAAACTTCCTTTTTCGTTTTCCGAGTGCCCAAAATGAGTTTTTTGTGAAGGACCTA
CCATATATTTCTTTCAAAATTGGACCAAATCATTTTTCTAAAATACCAGGCCATATTTAA
TGTATAATTGACAAAATGGTTGGGTGTTGAAAGCTTTTATCCACCTCTCGTGAAAAAGAA
ATATTTATATCAATTAAGTTGCAAGCGGGTTAAATTTGAACTGCAGTTGCATTAGAGTTT
GCTCTTTATTTTTCCCAAAAATCATTGATAGGTACATAAGTATCTATTTAATGAGAAATA
CATGGTGTGGTGGAGATACGTCGAGGTTTGGATGGTGGTCGAGGGCCCCAAC