morexGenes - Barley RNA-seq Database

Contig contig_7062
Source Contig contig_7062
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_7062 (6858 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_7062

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_76230	1	1010 bp	MLOC_76230.1	Available	Available	LOC_Os01g09430.1, FRAME:-3, EVALUE:0.0, 13101.m01002 protein expressed protein
MLOC_76229	3	1182 bp	AK374028	Available	Available	None
CDS Structure of MLOC_76230

CDS Structure of MLOC_76229

Contig Sequence (6858 bp)

>contig_7062 6858 assembly3_WGSMorex_rbca.fasta
CCCCGTTGCGGGGGCCCGAGCTCCGGGTCGACTCCGCCGCCGCCGCCGCAGGGTCCGGAT
CCGGATCCGGCCACCTCGACTGCGTCGCCCTCGTCCCCAACCTCGAGGAGCTGAGGCTCT
GGGGGCTCACCATGACGCGCGGGCCGTCCTGGGGCCAGCTCCAGCGGCTCCGCGTGCTGG
AGATCGTCGGCGCGTCCCTGACGGACCTCGCCGTCAGCGGCGCCGTCGACGCCTGCCCCA
ATCTCACCGACCTCGCCCTGCTCGGCTGCGAGTGCTCCGGCACCGTGTTCTTGGGGACCC
CACTGCTCCAGCGCTGCCGCCTCGACTTCGTCGGCTCCGCCACCTGCGCGCTCGCGCTCG
CCGCGCCCCTTGTCGAGTCCCTCGAGGTCCAGGGTTTCAGCTATATCACCCTGCAAGGCG
GCGACCGCCTGAAACGCCTCACAATTTCCAAGAACACTGGTACGCGCTGGACTGGAACCC
CCTGAAACCCATGGCTTTCCATGGCAGTTCCAATTCGTTTCATTCTGGTATAATGTTAAC
TCCCGTTCAATGTTGCAGGGAGGGTGAATACTGTCGGGATAGACAGGCTCCCGGTGCTAG
AGCAGCTGTCACTGCGTGGTGTCCAGTGGAGCTGGGGAGCCGTCAGCCATGTGCTGCAAT
GCGGCGCCGAGGCGAAGCATCTGGTGATGAAGGTCGAGTTCTGCGGCGATTCTGATACTC
TCCAGCCGTTTCCGGAGGTCGACCTTGTTGAATTCTTCAACAGCCACCCAAAGCTTTGCA
AGTTTGAGGTCCACGGCGCCATGTTTGCGTCGCTCTGCCAAAAGAACAGCCTGAAAAACG
TTCGTCATATCTTACTGATTATCAATTGAATCTTTTCACTTCACGCTGGTATATGGCATG
GCTAATTTGTTTCTCTGGCATTGCAGTTGGACTCGAGGTTCTTGATATCTTCATTGGAGG
AGGTCCTGATTACAGTGCGCTCACCCTTGAATGCTGAGCAGAAGCTGATCACCATTGAGT
CCCTTGTCAGGTACAGCCCAAGGCTGCGGAGGATGGTCCTTAGGATCTCGCAGATGAAGA
ACTGCCATGAGGCTGCAGATGAATTCTTTGAAGAGGTTTCCAAGTTTGCGCATCTGAGTA
ACGGCAGAGTGCGGATTGAATAGAAGCACGCTGCTGCATGGCTCTGTGCTTTGGCTTTTG
CGAGTTGCGACTGAGCCAACGAGACTCTTATCGTGTGCTACTATCGAGCTCAATTCTGCT
CGAGTAGTTATGCTGTTTTGTTTGTCATTGTTCATGTGTGCTGGATCTTATCAGCATGCT
TAGGGTGTTTGTTTGGTCATGTGCTAGTTAAAATTTTGTACCTCGAACCTGTATTGCTCC
TTGTTTCACGAGATATAAGAAACTACTTTACTTCATTGCTGCAACAGCAACTTATTTTTA
ACCCTTGTGTATTTGATTCCATCCAATATATTGATATGTCAAAGTGTTGATGATCTCAAT
GGGATATGTCAAAATTATGTATAATTTGAATGAGATATACCTAGAAGGCTAGAACCACCA
ATAGTTTCTGAAACACCACCTGACTTCTGTAGTCCGTTGCCTAAGCTGTATGGGGCTTAG
TTTGCACCTTAGTTGATATACTTGGTTATCTTTTGAAGTGGATGTGGACATTCCTATGTT
TAATAAATTGTGATAATCTATAGTTTGTGTTTTCAGTAAGATAAAAACAATAAAACCAAA
ACCAAAATTATGTAAAAGCTGCTCGACAAAATGTGAATGTCAATTTATTGGGATTTAATT
AACAATCAGAAAAGTCCCATGACAAAGGGAGTGATCTCTTGTATTATTTCAACTGATATT
ATGCTTAGCAATCTTCTGTACTCTTCCAACCGATCACATTTTTGTTATGATTAGTAGTTT
GTATTCACTAACCAGTATACAGTTGCAATAAGATGATGCTCAGATACAAAGATACAATTC
ATGGTAGATTGATTTCATCTATCATATTACTAGTTTATATTAATGATATCAATGTCCTTA
ATATCCAAATGAGTGCTGCACTTTTGGGGATTGCCTTGCAATTCAATCTTGCATCCCCCA
GTCGCAAGATCACAATGGACAATGGGCATGATTATGTCAAGTTAAATACTCATTAGTCGA
CCTGTGTTTCTTGCAAACCTTTCTACTCATATACAATGTCCAAAGCTTGAGAAGTTGCGC
CAATGAATGAAAAATCCTTTCCCATCTTGGACTAATTGCTCCTGTAGCCCCCGAAAGACT
GTCATCATTCGAAGATACATCAATGCAATGTTCACTTCAACCATTCCACTTGGCTCCTTT
TTCCTGACACGAGCTTAAGCATAATTTGTTTCCAACACAGTAATTCCCATGACTGGTCTC
ACTGGTGTTTTGGACACGCTCACTATTGAAATGCAGTCTTCTTACCTTTATTTTGTAGGT
ACTTCAATGGTTATAGGTATTTTGTGTTGCTAGTCAGCGCCATACTGCATTCATTATCTA
GGATCCCTAATTTGAGGTCTGCAATCAGAACCTGGAAATATTATGAGAGATAGGCTGGCA
GAATTCCATCAATGATTGCTACTCAGATATCATAGGACAAGGTCTCCATGACTTCTTATT
TAATTGGTTATTGTAGCTGGACTCTTTCCAAATATGTTAATCCATGGATTATTTAGTTAA
CTTAATTGATAATCTTTAATAATTTACCCGTTTACCACTTAATAACATTTTACTTCCTCT
TTAACCTGTTGAGTAGGCATTGTCAAACTATTTGATTCTCTGGATGTTGTGCACACAAAT
AATTTGGTCCCACTTTTAATTTGACTTTAATTTTCCAGTTCTTTTGCATGTTTACCATGG
TGCTCAAATTGATAGCCACACACACATTTTTAGTTTTTGGTTTGTGCCAAGTAGAAACAG
CGCCATGAGTTTGAATGTGAAGTACTCCTATGTTCCAACAAATATGAGTCCTTAGCAAAC
ATGATCCTTCATTCCGCGTTTTGATTGGGACTAGATTAAACCAGGTAAAAAAAGGCAATA
GCGTTTATATTTGGAATAACCTAACAGTCACATATATGAGTAGGACTGCTTTGTTCTTTA
GAACCTTTATTCACCTGAATGATTGTATCTGGACCAGTACCATGTTTTCTTGCCTGGCAT
ACTGCATTGTATTATACAGCATTGACAGCAGGAGCATATTGCAGGTTGTTTGTACTAATT
ACTTGTGCGCATTATTACCGACAATATGGGCATTGCCATTGGCATGGTTGGGAGGAAGGT
TATTGGGGTTATTCTGTCAGTTGTTTATAGTACTCCCTCCATAAACTAATATAAGAGCAT
TTAGATCACTATTTTAGTGATCTAAATGCTCTTATATTAGTTTACATTACTTGCACCACT
ATTTTAATATCTCAAATAATGTGGCAGATGATGCTACTTCTGCTATGTTACCTATGATGC
CTGGTGATGGTAAATGGTTTTGGGCTTTAATTATTTTTTTCTTTGGATCAGGTATGACAT
CCATGAACCTATTTTTACTCGAGGCCAAACATTAACTGTCATGGGTTTGCATTTTAAAAC
CTGTTTTAGTGCTCTGAATGGAAATCCATGAATATTGTCTTCAACCTGTTACAAATCTGA
CATCTTATCTAAAGCTTACCATGACTCCAGTATGATCATCTCTTTACTTAGTCCATTTTC
TCCAAGATAGTATCTCATAATATTTTTAGTGTTTCCATATTGTTCTTTGGGTCCTTACCG
CTTTCCCTAGATGCACTTTCTTTGTCATTTGTCCCCAAATGCCTACCATTTTCCTCTGCT
GGCTGTGCTATATTCTTTTGCAGAATGGATTTAGCACACAAAAAAATAAGGTATGCTTCT
TTAGATCAATAGGAGGATCTATGGCAAAATAAATGAACAAATAAAAAGACAAACTGCTTG
GATGAAGTGACATATCTAATGCAAGGTCAAAACACACTTGAGATTTTGGTTTCCCATACT
ACGTGGTTTAGAAATAATTATTGTCCATGGACCATAGAATGAGAATGACGGATACTTTAG
GAACATTTATTTATAGAGATTGTGACCTCCATACTGGCCCAGATGAATGTTTCAAATTTG
TTTATATATGTTTTTTCATGGTTGCTAACAAAATGCAACCATGTGCTTTCAATTCCCTAC
TCAGCAAAGTAAAATGGTTGAGTTGATTTTCCTCATTGGAATTTAGACCGTCAGCTTTGC
GTGAATAAGACAAGGCAACACAAATGTTCAGCTTTGGCGTGCATGCATGCAGATGCGGTA
AGCAACCCAAACTATTCCCTCTGTACCGAAATATGTCGCTGAACTACTCCAGCGACAGAG
GGAGTATGTGAGAACAAATATTACAAATGCATGAGTTGTGAGATTGCTGTTGTGCATGCA
AGAGAAGTCCAAATGCATCATCCTTCTCGAAAAAATTGAGTAAACTGTTGCACATGCAAG
AAGAAACCCCATATATGAGTCTATGTATTGCTGATTTGTACTCCTACATGCAACAACAAA
GAACAAACCAGGCAACGGACCTCTGTTAGTTCCTTGATAAAAACGAATGCAAGACCTACA
GTTTTAGTCTGCTGGATAGCTCCGCCATTGCCACTGTGTAATTCACCGCCGCAGAATATA
TGTACACCTTCTGATTCATATTAACCGTCGTATGGATCGAAGTGGAGTGCCAAATTCTCT
GGCTAGAAGCCTCTTCCTGCTGCTGCCGCCATTGCCACTGCATGGTTCACAGCCGCCTCT
GAAGTCTACAGATTTGTTTATTGCAAAGTTCAGGACTTCAGATGTTATAGGTCTGCAAAC
AAGCAAGAGCAGCACAATGATTCTTCCTGTCCTGCTGCACAGAATTATTCCAGTATCGTA
TGTGCAAATCAGATCACGTAGTACATGGTAGTGGTACACACACCCCACAGAAGTGTGGAT
CAATCTTGAGCAAAGCCTTGTCTCTAAGACTCTAATGACGAACATTTACACTATTTACAG
AGGGAAGCAAGTACGCGCCGTGGAGGCTCGAAAGACCGCCGTGAGTGCAGCACTGCCCAG
TTGTCGATGAGAAGGACGTCACCTTGCTGCCATGGGACCGCGACACATTCCTCTTCCAGG
ATCTTGCCGCATGCCTCTATGACATCGGCGGGCAAGGGCGAGCCATCGCCGAAGGTGACG
GCCTTAACTGGATCGTTACGGGCGTCCTTCCACCCCGTGTAGGCGGCAACCATGCTGTTG
AACCATATCTTCCTCCCCCGGCTCTCATCCCACTTGACTGCTGGTATCGGACCCATCACT
GTTTTGACCCCGTCGTCTGTCCATTCCAGCTTCATCCCAAGCTTCAAAGCCCTGTGAAGG
ACATCAGGGTGAAAATTCAGTTATCAGCGTTGGGAATGGGCTAACTGTATCAATGAAACC
ATACTTCAAATGCTATTCAAAAGCTTTTAGCATTTTTTGACTGAAAAGTGACATGTGTTT
TGTGATGTGCTGCACTCATGACAAGATGAAGGATAAAAAAGGAGTATTAAATAATTGAAG
GTCATTCGAGTACCAGATTTTTTTTAAGCTTGTACTGCTCTAGGATGTATAGTAACTAAG
GCAAATACATGCATGATTACAATCTTGAACTCTAGATCATACACCTTGTAATGCACTTCT
AACCAACGACCAACATTGACTCATCCTGAACTTCGCAACCAAGACAATAGCAGCTCAATC
TTGAGCTCTAGATACACACTGAACCAAACTCATGCACTGATACATATCTAGTGAAATACA
ATAATGTTACAGTAGATCTCTGAATGCAAATGTAAATTTTAAGAACTGATAACAGAGCAT
CAGAGCCAATAATATATTACTCCCTCCATCCGGAATTACTTGTCGCACAAATGGATGGAA
ATGGATGTATCTAAAACTTAAATACATCTAGATACATCCATTCCTATTCCTATGACAAGT
ATTTTCGGACGGAGGGAGTAGTTCTGTTTTAAAGGAACAAGAAGCCAGACCTTTCCTCGG
CGACGGATTTATCTTTAGTGAGAAATGTGGATTGCCATCCGCGGCCGATCGGAGAAGATG
GGTCGTCACCCTCTCCCAGTACCCTTGTGTATATGAGGCCATGCTTCTCCAATTTCTCCA
CAAATTCAGGGAAGTTCTCCTTCATCCTCTTATACACATAGTGGCTCAGCACTATTGGTG
TCTCTCCACCACTTTTTGGCTCCACCTCACAGAAGAAGAACAGCTTCGCCGGAAAAGTCG
GAATCTAAGGAATGATCGAAATCAAGATTCCATATGAGATTTGTTTGTCACATAATTCAA
GTTCGAATGGCGACAATTTTTTTTTTATCCATAACATGAGAAGAAAACAAAATTCAAGTG
CTAATATCTTGCAATTCAGGGTTTCTTTATGTTGGTACATAATTAGTTATGAACATTCAT
CATATGCAATTAAACACAGATATGTCGAGTGGTTTGCCATCAGCTCAGAGCCAGTGCAGT
ATCATATCAAGCTTAACCATTATACAGTACTACAGTAGTTTGGAAAATTTTCAATTTGCT
ATGGTACTTATATGGAGTTCGGCGAACGCAGGAGGCCGGCTGACCTGCGCCATTTCGTGG
TGGAAGGGGATCTTCTGGTCGGGCGGTGACTCGTTGGCGGTGAACACCCGGCCGACGACG
TTGGTCCGGGGCGCCGCGCCGCCGACGTAGGGCAGCTCCTCGTACCCGAACGCCTCCACG
GCGGCGTCGAAGTCCGCCGCCGTCCGCGCGGGGAACCCGCGCAGCAGCACCGCCCCTGCC
TCCCGCAGCAGCGGCTCC