| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_70397
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_76173 |
3 |
2637 bp |
None |
Available |
Available |
LOC_Os07g48000.1, FRAME:-2, EVALUE:8e-32, 13107.m05128 protein retrotransposon protein, putative, unclassified, expressed |
CDS Structure of MLOC_76173
Contig Sequence (5720 bp)
>contig_70397 5720 assembly3_WGSMorex_rbca.fasta
TTGAATGGTGAGGAGGACAGTGGTATCCCCTGTCCATCAGAATTCAAGTCCGAAACTTAC
GCTTGCATTTTCCTGGACTTCGTGAATCTCAAGATGATGTGCCGGCTCAATCTTTTACAC
GTGCTCATAGGGATAGGGTGTGCGCTTGTGCATTCATAAGAATGGATGTATGCTCGTGTA
TGCAAGCAACTTGGATTGTACTCTGATAAAAAAAAAGGTGTGATCCATAGGATATCAAGC
CATATCGTCTTTATTATTAGTGAACCCAATGTGATCGGGCCTTATAGTGGAAGACAAAAT
AAAAAAATTATACACGGAACTGATAGCAAGAAGTGAAATTTATGTGACATAATATATATA
ATCAAAGCTTCAAAAAACATATAATCAGCATAACTAGTAGAATACTATTGATTTATTTTT
TGAGTCAAAACATATACTATAAATTGGTAGTGTACAAAGTAGCAAAGTCAAGTGTATTTA
TTGGGTCTTCTCTGCTTCATTATAGCCAAATGGAAATTAACCTTTCAGACGTAATTACAG
GTTCAAAAAACGCATTGAAGTCATCAGCAAGTTATAGGCCATGCATGCCCCTCCTCATGC
CACCACACTACACGCGTTGCTACAACAGTTTAGCCCAACAGCCACTTAACCATCGATAAG
GAGGAAAGGCCCACGGCCCAGTTCGCTAAACAAAGAAAAACGGTTCGGCTTTCATCTTCT
TCGTGCAGATGCAGAAAAGCTTCAGGTCTTCTAATGGTGACTCCAGCGGTTCCTCACACA
TACCTGGGAGGCTGGGACTGGGATGGGCTCCCCTTGGATTTCGGGGGCCCGGGGTGGCCG
CCCCGCTCGCCCCCCCTTAGGGCCGGGCCTGCGAGCGCTGGAGGTGAAGCGTGAGGCGAG
GCAAGGTGAGGGAGGAGCGAGGCTAGGTGAGGGAAGAGAGGAGTGACTGCAGGGAGGAGA
GGAGTGACTGAGGAGGTGGGAGGACTTGTTCGTGGTTAAGTAAAATGGAGAGGGTTTTTT
TACAAATACGCCATGGCGTCACTTAATACGGGACAGAGGGAGTATTATTTGTGGTGAAAT
ATTTTTGCTCTTGTTGAGTATAAAAATAATTTTTAGTATATTTTCATGGAACTTTGTGTT
ACAAATTTCTTAGTTGTTGATGTTGCAGAGTAACATATATAAGTTCGGAATGTAATATCT
GAAGCACTCTTTAGTGGAGTCTTGCATTTTTCTTGCCTGGTTCCTTTGCGTGTATCCCCT
TGTTAGCCATATATAGGTGTATTGTTAGCAATTCTATGTTGTTATATAAAAGATCACTGC
TTTGCATGAAAGTACTGTATTGTGCTTAATCTTATATCACCTTCACTTTATTTCTTCTAT
AAAACTCTCTGAAAGACATATTAACCCTTTGTGTGAGTCTAGCAAATTGCTACACAGTTT
AATTAAGTATGATTGGCGACAAATTATTTTGACATATCGAACATGTAAAGGAAGCTAGGC
TACCCGCGGTTCTAGCGGCATTCACGCGCGCGACGTTTTCCACCCCACGATGAATTTACT
GTATGCGTTTTTACCCTCCTGGTTTATGGTCATCCATCGGTTCGTTTTTCATGCCACAAG
CTGGATTGACCTGAATGACAAGTGGGCTCATTCGCCCGTGGGGACCAGAGACCATAGGGT
GGGCTGTTGAAGGGCTGTTTGGTGTAAAATTGTGACCTGAACATAAGTGACTGGCCTTGC
ACAACTGCCAATTTAAGTGTTAAAGTATGGAATTCAGCCGAAAAAGCCGCTGCCGACACC
AACATCAGGTTATCAGAGTCACTATCCGAGCATTCTTGGTGAAGTTGTTCGTTACTCTGT
ATATGCTCGATCATCTCCTGCACAACATGAAGTTGAACTGAAGCCTTATATTGATGGTCC
TTAGACCACTTTTCTCCACAAGTGAAACAAAGCCCCTTTGATCTCCTGTATGAACGCAGA
GCATTCCATTTGTCCTCAGATGGAACAGTTTTACCCACTTCAGCAAACCTTCGATCAGTG
CCCAGCTGAGCACCCGGTGCAGATTTGGTGGTTGATAGGGACTTTTTGGCAGGAAAACTC
AATTAACCGGTGTCACTCAATTCTTCATGGGGCAGTGCCAGATCATAAGCAGTATCTAGG
TCTTGTGGTTTGTGTAATGCCACAGACATACGCACCCATGGTCGCAACCCATCAATGAAC
CGAGTAGTGTAATACAAGCTATCAGGCATCTGTGCACAAGCGGAGAGTTGGTCATACAAT
TCAGCGGAACGCTCCATATAATCAGCCACAGTAGACTCCTGAAACGCTCCACATAATCAG
CCACAGTGGACTCCTGAGCAATGCGGAACATCTGCTGAACCAGAGATTGCTGTTGGTTGC
GACCAAACCGCTGCATCAACAAGTGACAGAACTCTGGCCAAAGCAAATTTGGTGAACGGC
GTTGCACTGCTTCCAACCATCGCGTGGCTGTGCCTTCAAACTGAGAAGTGGCGAACGAAA
TCCATCTCGATGCAGGGGTACCCTAGAGCTTGAAATAATGCTCGCATCGAGATTGCCATA
GACGTGGGTTCGCGCCGTCGAAACGAGGCAATTTCATGCGAGGCACAAGTTGGTATGCGT
CAGACATTTCAGAAGCAACATGCTCATGAGGAGAAAAAAAATCACGGGGAGAACCAGAAT
CACGTGCACCTCTGACCGGAGGAGGCACATAAACATGATGTACCCTCCCCCAATGGGACT
TGTCGAAGCCAAGGGGATTTGCCGCGAGAGCTTCACGGCCGTCCCCAACCTCCTTGCCTG
CCGACGAACTCGCCCGCTTGCCAAAGGGTTCCTCCTTGTTGCCGCGCTCGAGCTCCGCCC
GAATTTGCTCGACGTCGAGGCTGAGCTCGGCCCTGGCGCCATCGATCCGCGCAAAGATGA
GGCCGTCAAGAGCTGCAGTGGTGTCCTTGAGCATCCGACTGACAAATTTTATGATCTCCT
CGCCTTGCACCTTAAACTTGCGGTCGACCGACTTCGCGAAATCTGTACATGTAGTCGTGG
TGAGGAATCTCCACGATCAAAAGCTTTGAGTACCAGATGCGAGGAACATGCTTAGATCTA
TAATAGAATTAAGAATCGAAGTAGAACATCCGCCCAACCACCAACACAGCTACACACATG
CGTTCTGTCTTGGCCGAAGTCGTCCGCCGTTCGCCACCCAGGTACTAGCTAGGCACTGGC
TTATAATGGAAACGATACACCCATCTTAACGGCCCAGTATGGGCTTGCAAGCCGGTCTGT
CGGCCCACGAGTCAACTGGTCGCTCTCCTCCTTGTTCTCCCGTTCCTGTGCATCTTTAGC
AACAACGGCAGGGTCGCTGACAAGTAGGTAGTACAGGGTCGCTGACAAGTAGGCAATACG
TCGGAGGTCTTCGCCGCATCGCCTGAGGGTGTCGCCTTGCCGGACACCGGCCGTTGGCAG
CTGCCGCAGCTGTGCGTTAGGCGGCTGGCCGAAACAGGTAAGGCTTTGTTTGGTAGAAGT
GGATTGGGGAGGTTTGGGGAGGAGGGGATTTGAGGGGATTTAATAAATCCCTTCATTTCA
TCCAATCCAGTCAAATCCTTAGGGTTTTGCTTGCACCAGTCCCTCGAGGAGGATCATGAA
ACACATAGATAGGAAGGGATTGAAGGGGAACGAAGGGGATTCGGCTAATCAAACCTCTTT
TACCAAATGGGCGTCCAAGGTTCTGTGAGGTTTCTGGCTCTTTCAAGAATTTTCTTCTCA
AAATCTCCTGAATCCCTCCGCGCGAAATCGAGGCCTAAGGATGCAAAATTAAAGTCCATC
CACACCGGGGCCGTGATCAGAATCAGAGTGCATTCACGTGGGGGCCGTGATCCACGACCG
TCTCGGGGTGCAACGCTGGGAGCAACTGTGCCGAAGGATGCCGCCGCGAAGAGCCTGGCC
GAGGGAGCGCCGTGAGGGCCATGGACGACATTGAAAAGACGCCCTGCAGGTAGTGCTTAC
TTCGTGCAGGAACGAAATCGGAATTGACTATCCTGATTGATGTATTAATTAAGATACAGA
ATTAGTATTTGCATCTGGTTTCTTCCCAGATCGAAAGACTCGCCTTGTGTGAGCCGTGAA
TGCCTCGGGCTGATGCGGCCATGCGGGAGGTCGGGGCTGATGCGGCCATGCGTCGGCTGG
AGACCTGCGCCGATCACCGCTTCCGTGTTGTTTATGGTCGAGGCCGTCGTGAAATCCCTC
CGCTGGAGAGCGTGTTGATAACGTGTTAAATGAAAACGAGATGTAAAAGTGAATATTTAA
TCTTTATTAATAATGAGTATATCTATATATAGAGTTACAAAGGTATCAAGTAAAAAGATG
TGCGTTCGAGAAGGCACCAGGAACCGACGTGGGTTTCCATATGACAACCGTCATCTATTC
TTTAAGCATGGATTAATGGAACTAGTATAAATGTACAAATGACCGTGCGTTGCATCGGGC
AAAAAAAAGAACACAACATGCTTCATGTGTCATTATGCATTATTTTTTATATCCGGTAGC
AAAAGAATATGTTCGTTGCAACTGGGAACGCCTGTGCTTTGTTTTAGAGAAAACACAAAG
ACTCCTAGTCCGCCACATGCGTCAGCAGATCGGGCAGACCGGAAATCGCAAGCTCCTCCT
CGTCCCTTAAAATCGTGAGTTCCTCCTCATCCCTTAGAACGCCTTACCGGTGTATCATCT
AGTACCATGCATATAAAATTTTAACCTCAAAAGCGCCAAGGCAAAACATGCAAAATAAGC
AATACCACCTGTCCTCGATTTTTTTAATACACCCTCCGTTCGTAAACATAAGACCTTTTA
GATATTTCAATATGGACAACATACGAAGGATAACGAGTGAATGTATACTCTAAAATACGT
CTATTTACATCTCAGTATGTAGGTCATATTGAAATCTCTAAAACATCTTGTATTTAGGAA
AAGAAAAAGAGGTAATATTTGACAAGTACTAACTGCATCAGAAATCATCCTTCTTTTCAT
GTTATGTTAATCTGATGCCAAATCCTAAATGAATGGTGATCTTGTAAAATATGCTATCAA
CAAACAACTTGTTACTATGCTTAACCCAAATTACCACAGGATAGATACATGGCAACCTCT
AGTTTTGTATTGATTAACATCATCGTCATCTGTACAACAGTGAGTCGTGATATATATTGT
GTCATAATAAGGCGTATGTACACCAAGGGGGCCTCTGCTTGCCATCGTGGGACGGCGACA
GCATACCCCTCCCTAACCGGGCCGAAGAAGCTATTTCCACACCTTGACTGCGCCGTCTCT
GCTGGCCGATATCAACCATTGGCTCGACAAGTTGACGGATGCTAGGGTGAGGATCGCGTC
CCGGTGGCAGCCGGCAGAATCGGCAGCGGCCATGTCAAGCTGCGTCTTGTGTGTCAACAT
GGACGCTGGTGTGGGCGTTTTGCACGATTCCTGCGCACAAAGTAATACTCTGTTAGCGTT
AGCATCCGTCAAGAGAGATTCAGAGAGACAACCACGCTCCTTCAAGCACCACCACAAAAC
TGATGCGATAAATTAATCATGCAGGAATGCACTAGCATCAGGTTGAAGGCTAAAGTGATG
GGCCAGTAAATTCATAAGGTTCTTGAGTGCATCAGGTTGAAGGTTAAAGTGATAGACCAG
TAAATTCACAAGGTTCTTGA
