Contig Data
morexGenes
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Map Locations of contig_7000 (5219 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_7000

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_76055 1 1381 bp AK248705.1 Available Available None
MLOC_76054 1 1127 bp MLOC_76054.1 Available Available LOC_Os02g30640.1, FRAME:+1, EVALUE:6e-64, 13102.m03349 protein basic salivary proline-rich protein 2 precursor, putative, expressed





CDS Structure of MLOC_76055






CDS Structure of MLOC_76054






Contig Sequence (5219 bp)

>contig_7000 5219 assembly3_WGSMorex_rbca.fasta
GCGCCGCGTGGGACCGCCCGGAGCCCGACCTGGCGCCCACCTCCTCCGCCCCGCGCCCGC
GCACGCGCACGCGGTTCGACTTCTACACCAACCCCGGCGCGGCCTTCTCCTCCGCCGCTG
CCGTCCCGCACAAGCGCAAGAGCGCCGATCCCCCGCCCCCGCCTCATGGTCTGTGCCTCT
CCTCTTCTCTTCCTGATGTTTATTGGATACTCTGCTCCTGTGTTTCTAGGTGGTTAAACC
TGATAGGCTTCTAGGTCAATTACCTTTGTAAGATTCATATCTGTAGGAATTATACACTGC
TGTCATAGTTCATAGCACCTCCATTGATACAGACAGTAGAGTTTTCCTGGGCTTGGGCTA
ACCGTCAACAAAAGCACCCTGTTAGAAGTACAGTATCTACTTACATGTTAACTTCTAACT
GGATGATGCATTGGTCGATTGAAGAATCTTGGGTGATGCTTTTAGGTTGAAGAGCATAAT
TTTGAACCTTTTATATCACCTACCATGGCGACGAAGGGTGATTAAGAGAACGCTTTTGAC
ACCCTAAATACCGTTTTAGAAGCTGGCTAGTGCGATTTTTTTTACTGTTTACTGATTACC
TGGAGCTATACTGTGCTGCAAGAAACCCAACTACTGTTTTGGCCTTCTGCACATCCTGCA
AAATGTTAAAATTACCATCACTTGTCTGTTCTCACGTTTGTAGCCCAACATAACCGTCTT
ATCGTATTGTTTACTCTTTGGGTTGATCCTAGCTAAATGACCCTACAAAGAACTGGGTTA
GTCAGGATAGCAAGTTAAGTAATTATATTAAGCCATGCCTCTGTTTGAGATTTGCTATTT
ACATGCAGGATGCCATAAATAACTAACATTATAAAGTTTCACCCTGATCATTGGTCTCAC
TTTGCTTGTTTATCTGGATCAGGGAACTATGGTAACAATTATCCTCCTCCACACGAGCAC
CATATGGCCCCATCTCCGATGGAAGGTGCACCAGGGAATAGTCCATGGAGAAGTCCTATG
CAGTTCCAGACTCCTATGTCTGGATACCGAGGAACCCCTCCTGGACCTCCACCTCACTGG
AACCCACATTCTACTCCTCCAGCTCAAGATCAGTATCCACATCCACCCAACTTTGGGTTC
AGAGGTCGTAATGCTGGCCGAGGGGGCAGCCCAATGAATTACAGACCAAAAGGTAGCTCG
ATGGATTACGGACCAAGAGGTAGCCCGATGGATTACGGACCAAGAGGAAGCCCGAGGAGT
TACGTACCAAGAGGTAGCCCGCATTTGTCTTCCGGACGTGGCAGGGGCGAGAACTACTAC
AACAGCCCAGGGCCAAGAGGAAGAGGGGGAAGGGGTGGCTTCCACAACCATTCTGGATCG
CAAGATCAGAGGAACTACTACAGGAAGTCCATGGTTGATGATCCTTGGCAGGACCTGCAA
CCTATCGTTGGCAGCATACTGATACCCATTGATGGCGCCAAGTCCTGGCTTCCAGAGTCA
TTGCGTAAAAAGAAGGAGGCACCTAACCAAGGACGAACGATACCAAATCCAACATCAGGA
TTGAGTCTGGCAGAATACCTTGACTTGTCTTTCAACGAGGCTTCTAATGAGTCTAATGAG
ACGTGACATGAGTTCTTAGTGTCAGGACTTCCTTTTAGCATGAACTTTTGTACCATTAGG
ATTGCTGTTGTTCTCAGCATATATTCATCACCTTTTAATTTGTTTCTCCTGTATGTTAGA
CTGCTTCTCTCGGACTAGATACAAAGATTTTGATCTGTGATATTTGTAGAATTGTTTATG
CACTTCTGTGGCCATCTTGTACCTTGATTTAGGGTGATGCAAGACATACCCTTTGACCTT
TTTTTTTACGGGGACCTATTGAGCTTGTATTGTATTATCTATCATTCACGGTATGTTGGT
ATGTTTTCATATGAGGTAAACCTAAATTTTGACATCATGGAGCCAGGCGGTGGCGGTGAA
TTGCACGCTGCATTGGTCGCGTTATTGTGTGGTTGGTTAAATATGAGAATTACTGCCTAG
GGCATGTATGGTGGCAAAAAGTGCCCACGATGAAGAAACACTATTGTGCGATACAGCAGC
ATGAATATCGTCCTTCATGTCAAGCCCAATGCTGAACTGTCATATCGCCTTTCATGTCAA
GCCCAATGCTGAACTGTCGATCGTCGAAATCCATATATGCAGGAAGTTTGTGTATAAAGC
CTGACATGGGCAAACCCCAAATGAAATGTTTCTGAAAATTTTCCACCAATAAGACAATTC
TTACAACATGCGGACGTGTGCTGATGCTTTCAGTGATCAGCTTCAGCACACTTAGTCCGT
AAATTTTATGCCGAAATTGCAAGAAGATGAACATGCCTGCTTGTTCCACAGTGAACTCGA
AAATCATCCGAGATTTTTACTGCTGCTTATAACAGACATCCACAAACTTTGACACCTCTA
AAGTTTGCTTCTTTGGAAACAAAACGAAATCAAACATCCTCAACCAAGAAAGAGCCAAAG
CTGCTACTGACATAGGAAGTTCTGAGGGAGCAAACAAACATTCGTTCCATCTTTGCCTTT
TAAATAAAACATTTGCTGGTGCTAATTATGTGAGCTGAGAAAAGGCAACTCAAGTGGGCA
CAAATTGTTGGGGGGTTATTATTCAAACAGTTCCCAGCATTTCTCTATAAAACATTGGTC
CCTTACATTTCGAGTGGTTGAAGAGCAAAGGAGGGAGGAGAACATGGCAGGTTTGGAACC
GTACATGAAAGGAATTAAGATGCAACAAAATGAAGCTTAGCCTCATACGGCCACCGAGCT
CGTCACGACACCTTCATCAAGTGCAACGACTCCAGGAAGCTGCTTTCCTTCCAACAACTC
CAAGCTAGCGCCACCACCAGTTGAGATGTGGCTCATAACATCAGCCACTCCCACCTTCTC
GACAGCCGCGACGGAGTCTCCGCCTCCAATAATAGTTGTCACACCCTTTTTGCTAAGCTC
GGCCAACTTCTTTGCAACAGCCTGCAAGAGAGGGATCACAGTAAAGTTTCTTCCTGTGCA
AATTTGTTCCATAGTAGAACTGAATGGATGAATTACACATGGCATTACCTCCGTTCCTAC
TGCAAACTTGTCAAATTCAAAGACACCCATTGGTCCATTCCAAATGATTGTCTGTGTTGT
GTCCAGGGCATCATTAAATGTTTTGACTGAATCTGGGCCAATGTCCAGCCCCATCCAACC
ATCAGGAATTGCAGATGCTGCGACGGTCTATAGAAAAATTCCAAATCAGGTATATAGTCT
TCACAGATTCGTGAGCTGCAGCTGCTTGACTATAAAATATCTACTGATAACTATCTTCAA
CACTTACAGGAAGAAAAACAAAAATGTAATATACCTGGCTGTTAGCATCAGGAGCAAACT
TATCAGCAATGACAACATCAGATGGCAACAAAAGGGAGACACCCTTTGCCTTTGCTTTTG
CAAGCAGAGATGTTGCCAACTCAAGTTTATCTTCCTCAACCAAGGAAGAACCAACTGATA
GTCCTTGTGCCTTGTAAAATGTGAAGATCATACCACCACCCAAAAGAAGGATATCACACT
TCTCCAACAGGGATTCAATAACCCCAATCTTGGATGACACCTTTGAGCCACCCACAATGG
CAGCAAATGGGCGCTTAGGGTTTGAAACAGCTCCATCAAGGTAGTCAAGTTCCTGCAATT
AAAAAACAGGTTCAAAGACTTCGGACTCTGTCTGGAACCAACGGATGGATAAATAAGATG
TTAAATCTTCTGCTCTAAATTCTTTATCCTTTTGTTGTATGTAGCATACCATCAATCGAG
TTCAAGCATCAAACTTCAGAAATAGAAACAAAAGAAAGTATTGACCTTCTGCAAAAGGAA
TCCCGCAACAGAAGGCTTCAAGAACTTGGTAACTCCCTCAGTCGACGCATGCGCTCTGTG
GGCTGTTCCGAATGCATCGTTTACAAACAGATCTGCCAGCGAAGCAAGCTTCTTTGCAAA
CTCTGGATCGTTCTTCTCCTCTTCCTTGTAAAATCTTACATTTTCGAGGAGCAAAACAGC
ACCATTTGCCAGGTCAGCCACCAACTTTTCAACTTCTGGGCCAATAACATCATCTGCTTT
TTTCACCTAATTTGTGAACACAAATGTGTTTTGATAAGTAGCCTACAATCACTTCAGCAT
ATGTTTGATTAGAAATCTCGATGGTGTGGAACAAAAGAATACCTCAATACCAAGAAGCTC
GGACAATCTGGGCACAAGGGGAGCCAAGCTAAACTTAGGAGTAACACCCTTAGGACGACC
CTGCAAATCCATAAGAAATAAGAGTTGTGAATCTCATACCGATGACATGAGCAATCATAA
GCAGCTCAGCATGAAACTAGCATCGGATTATCCTTTATAAAAGGGTTGCTAGGAAATAAA
GCGGGAAATCCATAAGTATAACAAAAAAAATATTAATTTAAAAAGGACAGCTCACTACTA
GAGAAGTAGTGATGCAATAGTGAGGATGCATATTTGATTTGGCTCGGCAGTAGTTAGCTA
ATGTTTATTGTGACTACAGAACACATAAATGGATGATGAGTCAAAGATTGTATTTAGTAG
GAGTAATTCCTTGGCAACGATGATCAGTCGTTTTAGGACAGGCTAACCATCAGTCAATCG
TACTACAAAACAATAATCAAACTGGCAACTAGTTCGTCATATAAGAGTGTTTTTTACACT
AGTGCGCTCTTATATTTTGGGAGGGAGAGAGTAGTAGACAGAGCTGAGGTGTTACAGTAT
GTGTTAACATATAAATTTTTTAGAATGGATTATAGGGAAGAACACCCACATTCTGCAAGT
GTTCCTACATTGTCTTGTGTGTGTATTTATGGGGCTGAGATGATTGATTAGTTAAGTTTG
CGGGGAAAGGGCGAGAGGTGGAGGCTTACCAAGTGGCTGGTGAGGATGACCTTGGCGCCG
TTGGTGAGGAGGTACTTGATGGTGGGGATGGCGGCGCGGATGCGGGTGTCGTCGGTGATG
TTCTGGTTGTCGTCGAGCGGCACGTTGAGGTCGGCCCGCACGAGCACGCGCTTGCCCTCG
AGGTCGGCGGCGGTGAGGTCGCCGACGCTCTTCTTGGCCATGGTGGCGACGGCGCGGGCC
CCGCGCGCGGCCGAGGCGGCCCGGCAGCGCGACGCGACGTGGACTGCGAGGCGCGGGTC