morexGenes - Barley RNA-seq Database

Contig contig_69761
Source Contig contig_69761
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_69761 (8705 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_69761

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_75998	5	1360 bp	AK358331	Not available	Available	None
MLOC_75997	3	2105 bp	MLOC_75997.1	Available	Available	LOC_Os03g17610.1, FRAME:+2, EVALUE:0.0, 13103.m02106 protein OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed
CDS Structure of MLOC_75998

CDS Structure of MLOC_75997

Contig Sequence (8705 bp)

>contig_69761 8705 assembly3_WGSMorex_rbca.fasta
GCCAAAGATGAAGGGAGAGGCGGTGGTAGTGGTGTCGTCGCTGGTGGCCGAGCTGGAGGA
GGGCCCCGGCGACGGAGCGGAGCCGGTGACCTGAGAGGCGGCAGATGCTGGAGGAAGCTC
GACCATGGGCACCCGGTGTCTGATACCAAGCAGGATGATTAATTATGCGATGCATTGCTT
CCACCACTCCTGGTGTCTCTTATACACAAGGGTTGGTTACAGAGAGCCCGAACAAGGTGG
CACGCAGGCCTGGGCATGACTTGGATCCTAAATACAAGGACTACAGTTACAATACAATCA
GGTATGTACACCACATGTTAACAACTGTTTCCTTAGTAACCAAGACTTTTCTCAACAACA
TTGTCAAGTTACATGGTTTGCCTCTGGTCATTGTGTGTGACAGAGATAAGGTATTTACCA
GTGCTTTCTGGAAAGAGTTATTCAGAGTTTGGGATATAGAGTTGCACATGAGCACAGCCT
ATCACCCACAAACAGATGGGCAAACTGAGAGGGTCAACCAATGTTTGGAGATGTATTTGA
GGTGTGTTGTGCATGATTCTCCAACTAAATGGGCATTGTGGTTGCCTCAAGCAGAGTTTG
GGTACAATACAACTTATCACTCTTCTTTGGGTTGCACTCCTTACAAGGCACTGTATGGCC
ACGATCCTAATGTCAGTCAATTGGTGGGTCACAGAAGTTCTAGTAATGCAGATGTGCAGA
CTTGGCTAAATGAGCTTACTCAACACATGGCAAGACTAAAGGAACATCTCACAAGAGCTC
AATGCAAATACAAACACTTTGCTGACATGAAAAGGTCTGAAAGAGTGTTTGTTACAGGAG
AAATGGTGTACTTGCGGCTTCAGCCATATGCTCAATCTTCAGTGGTAAACCGACCCTGCC
CAAAGTTAGCTCTCAAGTACTTTGGGCCATATAAGATTCTGGAGAAAATTGGATAAGCAA
CTTACAGACTGGAATTACCAAGGGACAGCATGGTGCATCCGGTTTTTCATGTCTCTTAAC
TCAAAGGGCACACACCTCATCATACTCCAGTGTTCAAGGTCTTACCAAAGCCAGTGGATC
TATTGGCACCAGGACTGCTACCTGAACAGACACTTGATCGTCATTTGGTGAAGAAAGGAA
ATGCGCCATACCTGCAAGTGTTGATCAAATGGTCTGAACTTCCGGCTACATCAGCGACAT
GGGAAGACTATGAAGTGATCAAGACCAAGTTTCCGGATGCTCCAGCTCGGGGACAAGCTG
GTTCTTCAGGGGCGAGTACTGTAAGCATTGCGATGCTTACGACCACATCCAAGAAGTAGT
AATGGTGCATTAGGCCGTGGTTACGTTGTAAGTAAGTCATTAGTGGGCCATCAAGCCGCA
TGTGGGACCCAGAGCCATGTAAGTGAATTGGATAGGTTAAATGCGGTAGAGTCGCACCTC
GGATCGACATTGAAATTGAAAACGGAATATTCCTCCTCTCCAGTTGCTTCTTCCTCTCGT
TCGCTCTCATCCCCTCCTTCTCTCTCGCTGCCGTCTCAAATCTCGATCCCAACCTCCACC
TCCAGCTCAGGCTCGTCGCCGGCCAACCCGTTGTTGCCGGGTCGTGACACAACACCTGTG
TCTGCATCGGCGTGTGGGAAGGGAGGCGGGGGACCGATGAATGTCGCAACCGGAGTGGAC
CAGAGGGGTGAGCCTATGGGTTGGGCGCTCCGTCCGTCATGCGGTTGATCGACCCCGACG
GAGATCGGGAGCCCTATTTCTCGACACAGAGTCGACGACTTGACTTACGGAGATGCGACG
GGCCTCCTATGGGAATCGAGGTGCAGAGCAGCAGGGGGCTGGGTTGGTCGGTGAGATGCT
TTGTGGCGGGGTGCAGGAACCCTAGCGGGTGCGAGTGTATCAAGGAGAGGAGCCGCAGCG
TCTTGGTGGTGGTGATCCACGGAGGTCGTTGCCTCTCGTCTCAAGAGAGGAGGAGTAGCA
TCTTGGGATCTGGATCATATTTGGCCAAATGGGTTGTGTAAACTGGGCCGGCCCGACAAC
CCGCGTGCGTGGCACGACACGAGCCCGGCCCGGCACGGGATAATCGTGCTCGGGCCTGGC
ACGAAGCACGCCTCGGGACGTGTCTGGGCCTGGAGGCTGGGCATGCAGGCCGACAAGGCA
CATCACGTTTATTTTTTATACGTTTTTAGATTTTTTTTAATATATATATATATACACATA
ACATATGACACAATAGGTCCAAAAATAAGCCCATAAAGCTAAAAATATGCGGCCCATCAT
ATGCTAATCGGGCCAACATGTCGTACCGTTTGATAATCGGACCGTGCCTGGACCTGGAGG
CGCAGACCACGGGCTGGCACGACACGGCCCGACTAATAAACGTGCCTGGACGGGCCATGT
CATGCCAGACCCGATTACAACGGGTCATATCGTGCCGGCCCGTTTGACCAGGTTTGATCT
GGATCGGGTTAGGTAGATTGGCAAATGGTTATTTTTCTTGTTGGTGGTGGGAGGCAATGG
GAGATGGGACGAAAAAAACTGGATGAAAAAAAAAACAGATAATGGTGGGACCGATAACGG
AAAAAACCCGAGAAAAAGAAGCTACCAAGTCCCCTTTAAATGTAGATAGAGATTCCCGAA
AAAAACCAACGAGACGTGTTGCTGGGCCGCGCTAGTACGGGCTTCGTGGGCCGCGCGCTT
GGCACATAGGGTAGGTCCGGAGGACAGGTCTCCGTCCCTTCCATTCTCCCCAACCAAAGC
CACAGCCACACTCGAGTTCGTATCCTGCCGCCGTCTCCGCCCGTCCGCCGTAGCGTCCCC
CCCGGTGAGCCCGCCTCCGGATCTCTGCAAATGTCGGAGAGGAAGCGCCGGGCGGGGACA
GATGCGGCCGAGGGGGGCTCCACCTCGAAGAAACTGCGCGGCGCCTCGGCCGCCGCATCC
TACGCCCAATCCCTCCGCTCGAAGCTCCGCCCTGACGCCTCCATCCTCGCCTCCCTCCGC
GCCCTCGCCTCCGCCGCCTCCAAATCCAAGCCCGCGACCGCCTCCTCAGCCGGAGCGAAA
GCCCTCTCCGAGGACGACCCGGCCTCCGCCTCCTCCAACTACATCGTGGTCGCCGACCAG
GACACCACCTCCGTCACCTCCCGCATCAACCGCCTCGTCCTCTCCGTCGCGCGAAGCATC
CTGGCTGGCCGCGGCTTCTCCTTCGCCGTCCCCTCCCGCACCTCCTCAAACCAGGTATAC
CTCCCGGACCTCGACCGCATCGTGCTCCTCCGCCGCGAGTCCGCGAGGCCCTTCGCCAAC
GTCGCCACCGCGCGCAAGGCCACCGTCACCGCGCGCGTCCTCTCCCTCGTCCACGCCGTC
CTGCGCAGGGGCATCCATGTCACCAAGAGGGATCTCTTCTACACCGACGTGAAGCTCTTC
GGCGACCAGTCCCAGTCGGACGCCATCCTCGACGACGTCTCCTGCATGCTTGGATGCACC
CGCTCGTCCCTACATGTCGTCGCCTCTGAGAAGGGCGTTGTGGTTGGCCGCCTCACTTTT
GCTGATGACGGCGACGTCATCGACTGCACGCGAATGGGCGTCGGCGGGAAGGCCATCCCG
CCCAACATTGACAGGGTGTCAGGCATTGAGAGCGACGCTCTCTTCATCTTGCTTGTGGAG
AAAGATGCTGCTTTCATGCGCCTCGCCGAGGACAGGTTCTACAACCGTTTTCCGTGCATC
ATATTGACAGCAAAGGGGCAGCCGGATGTTGCCACCAGGTTGTTCTTGCGCCGGCTTAAA
GTGGAGCTGAAGCTTCCGGTGCTCGCATTGGTGGACTCTGATCCATATGGGCTGAAGATC
TTGTCCGTGTATATGTGTGGCTCGAAGAACATGTCGTATGACAGTGCCAATCTGACAACG
CCGGATATCAAGTGGCTCGGCGTGCGGCCAAGTGATCTGGACAAGTACAGGGTACCGGAG
CAGTGCCGGCTTCCCATGAGTGATCACGATATCAAGGTGGGAAAAGAGATGCTAGAGGAA
GACTTCGTGAAGCAAAATGAAGGGTGGGTGAAGGAGTTGGAGACGATGTTGCGAACAAAA
CAGAAGGCTGAGATTCAGGCTCTCAGCTCGTTTGGGTTCCAGTACCTGACTGAGGTATAT
CTACCCCTCAAGCTGCAGCAGGAGGACTGGATTTAAGATCTCTTCTGATGACAGGTGAAT
AGATGATCGTGTTGCTCTTTATCTTTGTGTTCATGTTATGTTTGGTTCATTTCATCACTG
GTCCAATACATTCTCCTCTTCTTGATGCATTTTACCAAGGACATATACCTTATGCAAGTT
TAGTCGAAAAATGCTATCATCTGTGAGAATTAGTATTCATTGTACTTTGGCATTACACAA
GCGCATCCTTCCCCAAGACTAGTCAACTGACAAAACGCAGAATATTCAATCAAGATGCAC
GAGTTAATCAATATTGCTACTAAATATCATACCATGTTTCCAGCAGCTGCAGATGATACA
GAGAAAGAGCAGCTTGATCGAGGAGCATCAATTTGACACTAGTGGGGAGCTAGCTTAACA
ATACCTCATCTGTACCGTGTAACATCTGTGCGGCAATCCCTTTGTATGTTTTATGTATTT
GAAAAACCGTATGTTGTGTACTTGTGAGACCTGTATTTGGAAGTATCTGCATCTGTGGAA
TTAGATGTGACTTTTGTGTATTTGAAAATTCATATATTGTGTTTTTCTTGTACTTCTGGA
GATGGAATTTGGTGTAACTTTCTGATGCCTGTATTTTGAAGCTAGCATTCGCATATGGAA
AACCGGTTGTACTCTGTGCGTCTTGAATTACTTGTTGCTCAGATGGATGTATCTAGATGT
AATTCCAGGTGGAGGAAGAGATTAGAGCTACTGCCATAGATTTTGCTTCTTTTTTGATTT
GTGGGGATACTTATGTTTATCTGTATCATGTTTAAACAAAATGTAGTCTGTTCAATATTT
ATCTGTGCAAACTCATGCATAGGCCAGATGACCTGAAAGCTTTGACCTCTTTAGTTGAGA
TGACTTTTGGAGGATTAGAATCTTTAGAAATTATTTCTAGATTGGTTTTTTGATTCTTCT
GAAATTATTTCCTATTGGTTGTTTTGATTCATAGGATTGAATCCTATAGGAACATTTCAA
AAGGATTTCATTGTACTACATCTCATAGAAAAGTTACCATCCACTCAGACCTCATAGAAA
GAATCCTATGTTTCTCAATCAAATGGACCAAAATAATGCAAGGTTCGAATAGGCATGACA
TTCAAATCCTGCAAAAATAAATAAATCCTACTGCTGTATTTTGAGAATCCTGTGAATCAA
AGTGGCCCTTAAATCTGATGACAAAAGATGGACAAATCAGTTTCGTGTCAGAATGTTTAT
CATTTGATGTGGAAGATTGGCGATTACAACAATCATCTAATCACTTCAAAATTTTAACCT
GGGATGCTACCCGGTTGAGAATTGATGTGGTTCATTTACAGCCCCAAATAATGTGATTTT
CCATACATCTGAATATACTGGGCCAAATCAGACTACATTGGCCACCAACAAATCTTTCCT
TCTGGTATCGTCTTGTGCCAGTCCCGGGGACATCAAAGCAATAGCCCTATTGTTGTATGT
ACATCATCCATCCAGGATAATATTGCAGGTATAAATTGACCAAAGTGTCCCAAGGGAATG
TCACTGTACATCCCTTGCAGTTTTCCTCGTCAGCCAATGATTGAGTGAGTTGATGGTTAT
TTTTATCATTCCCTGTGGTCTCCTAGGGCGTTGGGGGGCTCTGAGTTTGGATGAAACAGG
AGGACGGCTTTCTGGTCCAACAAAAACTTCAAGACCCAGTTCATCCGTTAAAACAGCAGT
TATTGCATGCTCGACGTCAATAGCAGTTGTTTCGACATCAGTGTATGATGTCTTCTCATG
ACCCGTGATGATGACCAAATCATCTTGGACTGCTTTTCCTACTCAAAAAAAAGAATAAAT
AATTAGGATGGTTGAATTGCCAGTAGAATATATACCATCTTGACTATTAGTCAAACAGAT
TAAATTATAGCGCTGAAGGTTACCTAAAAGATGCTTCTCTTTGATCTTGCGGAGAGTTGA
GAGAACAACGATGCGGGCTTCAACCTATGAAACATACAGTTGAGTAGATGGCTTGGAATA
TATTCAACGGAACTCAAAATATGCTACTGGGGTTGCTTCACTCATGCAGAATCATTTATC
ACTTTGATGCAAGATGACACTTCCAGTTTCAACAGATTGTAAGGTCTGGGTTGTAACTTC
CCTTCTATTAATGCAAAGATTTGAAACACTTGCATTCTCGAAAAAAGAAGAGCATATGAT
ACATTAGTAGACAGATACTCTGAATCTCAGATTACCTTTGAAAGACCACGAACATCGACA
GTTTGATTTTGATCAACATCTTTTTGCAAGAATCTTGCCACTTTCTCAAGAAAAAGGTTG
AATGATTCGTTCCTCTCATCTTTTCGATCTAAATGGTAAAAATTTCGATTCCCACCATCA
CTAGACAAAACTCCTTCACTCCATTCCACTATCAATTCCTTGAGATAATAGTCATATGCT
TGATACCTGTCATGGGCAAAACAACAAATTTAACCCAGAAACAAAACATATACAGATATA
CCCTTTGCTGTGGTAGTATCAGTTTATCCGCTGACAGCTTGTCGACATGCTTCCTATCAT
GGAACAATAGAAGGATTATCAACAAAAAAAATTGCTCGCACAATTGCTCCTCTGTTGATA
TTATTTATAAATCATAACTTTGTAACTTGAAGGAATTTCTACTATACATTATCTCTGTCA
TGAAAACTCCTCTATACTGAAACTTGTATATCAAATGAACCTTTTAAATCCCCTTTTCTT
CTAGAAAGAGATTGGATTTTGTCCTTGTATGGGTGGATGCTCCTAATATATCTGTTGAAG
TGTATATGTGGATTGGCTATCCCTTTTCATCAGTTTGAACTTTTGATTGCGTTCGCTAGT
GCATGAAGCTTAACATGGTACCAGGGTCTAAGATCTTGAGTTCAAGTCTTGGCTTTCGCA
ATTTATTCAAAAATTGCTGCCCTCCTCTGTGTCCATGTATAGGCCTCTTGAGCCATGCCT
GGATTGTCTAGCCCTTTCCATCAGTTTGGACTTTTGGTTGCGTTGGCTAGTGCATGAAGC
TTAACAATCTTAACCATGAAATGTGACTTGAGATGAGCACACAGTCTCACCTGATTGCCT
ACATTTATTGAGACAGGACAAGACAATGTGCGGGATCTCAAGGCACATTTTCTCAGCACG
AAATGTAACTTGAGATGCGCACACACTCTCGCCTGATTGCCTACATTTATTGAGAGGGTA
AGACAACATGTGTGGATCTCAAGGCACATTTCATGGCCGGCATAGTAGCCGCATCCATCT
ATACAAGTATAAACTTCTAAACTAAAAGAACTGGAGAAGAAAAGCAAAGGAATGCCAAAG
AAACAGTATACAGAAGTTATAGTCACATACCCTGCTTGTCTCATCTCCTGATAGATTGCC
AAGCATTTCTGGATTTCCTTTAATGATCCATATTTGGAGCGCGCTGTCAGGAGAGTTCTG
TATGTCACCTGAAAAATGAACTTGTACCTCAGAATCTGATGCAACCTTACATCAATGCAA
CTCTTGATAATTGACCATAGGAATCAAAAGTTTAATTCCTCTAATAATAACATGGATGTT
AGGTGAAGAGCAGACAGACCAGGTGCCATATGATGCTGTCAAACATCAACAACTAATGAA
TATATAAAGAAATAAACCCAACCAATTATAACCTGAGTGTTGAAAAAAAATCTGTACTCT
CAGAATATAAGAAAGAATAGTGCAAGAAAATATGCATGCATCCGCAGAATTGAGTCATCA
AATAGAACAAAATTATTCTCGATAACAGTCAACAATTTGGACTCACCATATTGGGCTTCA
GTTGGTGTGCTTTCATTTCTTCAAACAAGTGCAACGCCAACTTCAAATCTTTACTTTCTA
CACATGCCTGGAGGAAATTGACACATAAGCTTACTGGTACTATAAACTTACAGCAAATAT
GATGCAGTGTCCTGTATGTTAACCAAGTCAACTACATTGTCTAATGGCCAACCTTAATAG
CTACAGTATATGCAGAGACATTAAGTTTTATTCCAACACGTTGCATTCTTCTGAGTGCCT
GTACCCAGAAAATTAGACAACATTAGTCCACATTTAGCAAGGAAACAACTTGTCCAGATA
AACCATGATATAACACTTGCAAATTGTCATATATGATTACATAAAAACTCTTCCATGATA
TGCACTAATTTTACATAAAAACTCTTCCATGATATGCACTAATTTTAGGAACTCTCCCAT
GATTACATTGTCGTATATTCATACAGTAAAGTACTCCCTCTGTTCCTAAATATAAGTCTT
TTTAGAGATAGATCACTACGGACTACATACAGACCAAAACGAGTGAATCTTACTCTAAAG
TATGTCTATATACATCCGTATGCAGTCTGTAGAGAAATCTCTAAAAAGACTTATATTTAG
GAACGGAGGGAGTAGTATGCACTGTGATCGTAGATGGAGGAGGGACTATTTGCCATCTGA
ACTGCAGAAAAACTGAAGACTGCTGATTGGCTGTACTAATAAATACTCCCACCGTCCCAA
AATAA