morexGenes - Barley RNA-seq Database

Contig contig_696185

Source Contig contig_696185

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

morexGenes Home
BLAST Search
Keyword Search
Samples and Analysis

Links

James Hutton Institute Home
BioSS Home

Map Locations of contig_696185 (288 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_696185

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_75959	1	217 bp	MLOC_75959.1	Available	Available	LOC_Os05g05280.1, FRAME:-3, EVALUE:7e-36, 13105.m00547 protein zinc finger family protein, putative, expressed

CDS Structure of MLOC_75959

Contig Sequence (288 bp)

>contig_696185 288 assembly3_WGSMorex_rbca.fasta
CTTGTGATGCTTCCAGTTGTAAGAGCTGATGCTCCCGAGGGGCGGTCCTGCTGCAGCATC
TCGCTGCTGGAGCGGATGCCGTTGAGCGCGCTCGGGTCCAGGTTAGGGAACACTGAGCAG
CGGCACCGCGGGCACTTGACGTTCAGCCGCAGCCACTGGTCGATGCACTCCACGTGGAAG
TTGTGCGCGCACAGGAGGCCACGCACCTCGTTCCCCACCCTGAACTCCTCCCGGCAGAGC
GGGCACTCACACCCGACCGCCGGGTCCGCCTCACCGCTCTACGCGGGA