morexGenes - Barley RNA-seq Database

Contig contig_6948

Source Contig contig_6948

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_6948 (4350 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_6948

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_75929	1	1177 bp	MLOC_75929.1	Available	Available	None
MLOC_75931	1	854 bp	AK366119	Not available	Available	None
MLOC_75930	2	1554 bp	MLOC_75930.2	Available	Available	LOC_Os01g47650.1, FRAME:-2, EVALUE:2e-22, 13101.m04927 protein vacuolar protein sorting-associated protein 16, putative, expressed

CDS Structure of MLOC_75929

CDS Structure of MLOC_75931

CDS Structure of MLOC_75930

Contig Sequence (4350 bp)

>contig_6948 4350 assembly3_WGSMorex_rbca.fasta
GGATTTCTTGTTGAAGACTCTCTCATATAACATACACTATTACGTCCTCCTGGTTGCAAG
GATTATCAAAGGTGGTCGACAAATCCAGGAAGTTCAGATATGTAAGGACGTGATGCGATA
AGCAAAATACTTGGCCTAAATTTTTTAAATACTCTTCCTTACTATGGTTAGACAATCTGG
AGAAGCTAAGCCGCAAACTTTTGTAGGCTCACTAGAAGACCTTAAGCTCCACCAGGTTGA
GAATGGTTTTACTATAGTGGAAAAGGAAGTAGATAAGAATAAGAATTGGCCTAAATCAGC
GAACATATGCATTCTTTGTCTAAACAATGGGAAGTAGATAAGAAAATCATTGAACATCAC
CGCATCAATTAAGCTCTCCTCCCGCATTTTCCATGGTTTATAAATAAGAATTGGAAATGT
TAACGATGCTAGTTAAGTTAGTTCCCTAAGCAATCCAACATTCATGCACATATGATTGGA
TTTGTTCATCTGTATGTAGCAGTGCCACAGCAGCGTAAAGAAGAATTTACTGGAGTTGAT
GCCACAAATACTATGGAGGCACTGATTGAAAACTAGGGAATTATACGTCTGAGTGTTTCA
CAGGGGAATATCTTCCAACAAAGATACTAAGGGATTAAGGGCTTACTGCATTTTACAACG
TGTATACTTTTTTTCACATAAGCACAAGATACTGGTATACTTTATTAAAGAGACTCGCCT
TTTCATTTTACTAGGTGTATAAATGGAGAGGGTATATGTTAATTTCAGATTAAGTTTTAC
CTATGAAGGCTATATAGTGTTCATATAGATTCAGCTTGGCATTAGTAAGTGATAACTAAT
ATGTACTGGTTCTGCAACAGTAAGGACAGGGCTGGCGCAGTGGTGAAGTACTCCCCACTT
GTGCCAAGAGGTCCTGGGTTTGACGTGGCCTCTCTACATTGCACTGTGCAGGGCCAAGGC
GTGCCTCGTATAATCCTTCCCCAGACCCCACCTGGTGTGGGAGCTTCTAGCACTGGGTCT
GTCCTTTATGCAATTGCTTGCAATAAGGAAAAAACAAAGATGTAAAAACAGCATCCCAAA
GACAGACAAAAAATAACCTGCAGAAAGCTAGACCATAAGTCGCAGCTCTCAGTAATGTAT
GTTGGCGTGAAACATCGAATTCATATCCAGCAGCATCAATACATGCTTCAATCGCCTCGG
GCAAGGAAGATGATATTAGCTGATAGTTATCATAAGCCTGCGAGTATAGATCTTCGTTAA
TGTCCCAACTTTGGTTTTCAAGGGAAAGAGGACCTATTTATGAGATGACATAAGAACTAT
TTCCAAAATGGTTGACAATGTTTTTATAGTATTTAGATATCAAACAGCGCGGATATAATT
CACAAGTCGCACATGTTGAACGCCATAAAGTGCACTCTAATAAAAATGATGATTATGTGG
ACTTTCAGTAAATGCCAATAAAATATGAAATAAACAGGGCCCAATATATGATACCTTACC
ATGTATGTGTAAGATTGCACAGGAACAATGAGAGGTAGGATGGTCAAATAAAAATTGTTC
ATGTTCTTTAGGACTCCCTATATTAAAATTACTTGTAGCTATAGCTCCCAACACATAGAA
CAAGGATGAAATTGAAGTCTTAGTTTTCCTGTGACCTTCCCCTGTTAATTGAATAGGCAT
CTCTCTAGCAGCACCATTACCAATAACTCAATAAGAAATTTCTAGGAGTATTGGATGGAA
AGTGTTGCCTCCAAAAAAAATGACAAGTATTCCAACCAAACCAACTACTTAAAACAACAT
CTGCATTGGAATAGAGGTAGTATTGAGGTAGGCACCACGACCAAAAAATGCATATTGTTC
AGTTCCCTATGTCACCTAAATAATTTGTGTGACAGAACTCAACATTTGAGGGAAAAGTAT
TGGCAAAATAAAATTAGCTTGTAGGAGCCCTTCAAAGTATTGCACTGACTAAACCCCACA
TGGACCATGCTCGCTCGGAATTGCGTAACATCGATATCATCCTTGTCCTAATTCCCTTTG
CAATAATTTTAGCTATATTCTTGGTTGCATAGCCCACTAATAAATGAAAGTATTAAAGTA
ATTAATTCAACTATGGTTTGATTAAAATATTTTCCACCTTGATTTTTCATTATGTAGCAT
AGCACAGGCATCTACTAGTGGTCCCACATATTTTGAGCATTCGAAACATTTATACAAAGT
CATCTCAGTGAGTAAATCAAACATAACTAACTTTCTAATGACCTAATGTCAGTGCATAAG
TTACTTTGTGACTAGTCCAGAGTTCTTGGTGAAGAAATAGTGTGAATGATCCAAATGCTC
ATCCAAAGAAATGCACCTCGACATGCTTGGACACACAATACCATCACATATATGTCGACT
TAATACAAATCAAGTAGTTTAATTATGCCCACTATAAGTTGTTAGATGCTTATTCTAGTG
TCAGACTTGTCATATGTCAATTACCTCTATAGTTGGTTCATATGGAGTCATGTTGAACGT
TATACCCGTGTGGATGGATATATTCATATTTGCTTGTTGTCCCGTGTGGATGGATATATA
TTAGCTCTACGACAAACAAAGCTTGTTGCCGATGTCTTTATTAAAAGAAAAGGGGAACTC
TGCCAAAATTTCTAACTATACCTAGACTAGACTTATTCGTATTTACCTTAGCATGGTAGC
ATTCATTGAAGTCCATGCCAGATGCCAGTGTTGTGACATGAATCCAATCTACCAACAAAT
TGGAAAGGAGGAGAGTCCAGGAAGAGTAAAACACTAGGGGAACAATTTATGGGAACTAGG
AGAGCTCGGATCAGATTTAGTTAAGTGGTTGAGCCGTTGGGATTACTTGGAGTCCTAGTT
GTAATTGGACTCCAATCATGTTAAGTCCAGTCTAGTTTACCCCTTTGAAGGATTCAGTAT
CTTAATACAGCCAAGCAAGACAAAATAATCATCTCTATTTTCTATCTCTTGGGTAATTAT
CTCGGCGCGAATCATGGTGCACATCATCTCAAGTGACTACATACTACACCTAAGAATTAA
GCTAGCAACAAGTGGATGGCAGAAGTAAAAGACAGATGTGCTATACCATTAAAGTCGCAC
ATTATATACATAAGAACAGGAATTAAACATTACCTTGGCACTTTGTTTGTCGTAGTGATC
TCTAGCATCATACAGTAATGCTGCTGGAGACATGCTTCCAATGCCAAAAATTGATGTAGT
AGAATCTGGAACTCGGTGTAGAAATTCCATACTTGAATTTGAGAGGATTCTTACACCATC
ACACTCTGGAATGAGCATTACAGGTTCATCATAATTGTATTGCACTGGATCTCCATTGGG
TCCAACCATCAAAAGCACTTCAGACCAGTAAAGGAGCACACTGTCCAACCCACACCAAGC
TATTTGATCCGGTGGTAATGCAGACTACAAGATTACAAAAATACCAGTGAATAATTGTGC
AAAAGATAACTCCCGCAAATTCATGCTAGACAATGATCGAATGCACCAGTGTTAGCACAT
AATTGGATACATATTACAGAGAAACAGTGCAGCACATCCGATACTTACATCACACTCATA
CTCGAATATGATCCTGGAGAAATCCGTGGGGATTACGAGCAAGCGCCCATCATGTGCAAA
CGCTGCAAGCAGCTTTCCGTTTGGTGACACCGCCATTTTCTGCACGGGTCCAATCTCCAG
GGCCTCTCCGAGCACCTGCACGCCATCCTCGTCAACTGCCACTACCCGATCGCCAACTGC
AAGCAGAACCTCTGGACTCCCGGACATGACGAACTGTGGCTCCACCACGGCCATGCACAG
CACCTGCTCGTCCTCGGCAACGCCCGGGTCGGCGAGCTCCCGCGGGTGGGGGTCGTCGAC
CTCGATGTCGGTGGTGACCACGACGCGGTTGTCCTCGGTGAGGATAGCCACGCCGCCTCC
CCAGAAAACAGCATCGGCGACGCCACCTGAGGCAGGCGGCAGCAGGGGTACGGGGCTGGA
GCTAGTAATGGGATTCAGATCGGGGAGGCGGAAACGGAGGAGGGAACCATCGGAGAGCAG
GGCGAGGAGGTTGAGGGAGCTGGAGAAGGCGAGGGAGTGGAGGCGGGGGAGGTGGGGCGT
CCAAGGGGAGGAGGCGAGTGGGTGGCCGGATGAGGAGAAGAGGAGGAGGCGACGGCGCGA
GGGCTCGGAGTGGAGCTGCACGATCTTGGAGTCGTCGCGGACGGCGGCAATCGGGCCGCC
GAACGGAGCGGCGGCGACGATGTGGGTCGAGAGGTCGAGGCGGCCGACCCCGGAGCTGCC
GCCACCGGAGGAGGAGGCGGGGGGGGGGGG